Protein–RNA interactions for Protein: Q8NDP4

ZNF439, Zinc finger protein 439, humanhuman

Predictions only

Length 499 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF439Q8NDP4 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
ZNF439Q8NDP4 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC19.12■□□□□ 0.65
ZNF439Q8NDP4 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC19.12■□□□□ 0.65
ZNF439Q8NDP4 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
ZNF439Q8NDP4 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
ZNF439Q8NDP4 AL592295.1-201ENST00000400984 884 ntBASIC19.12■□□□□ 0.65
ZNF439Q8NDP4 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
ZNF439Q8NDP4 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC19.12■□□□□ 0.65
ZNF439Q8NDP4 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
ZNF439Q8NDP4 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC19.12■□□□□ 0.65
ZNF439Q8NDP4 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC19.12■□□□□ 0.65
ZNF439Q8NDP4 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
ZNF439Q8NDP4 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
ZNF439Q8NDP4 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
ZNF439Q8NDP4 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
ZNF439Q8NDP4 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
ZNF439Q8NDP4 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC19.11■□□□□ 0.65
ZNF439Q8NDP4 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
ZNF439Q8NDP4 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
ZNF439Q8NDP4 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC19.11■□□□□ 0.65
ZNF439Q8NDP4 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC19.11■□□□□ 0.65
ZNF439Q8NDP4 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
ZNF439Q8NDP4 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
ZNF439Q8NDP4 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
ZNF439Q8NDP4 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
ZNF439Q8NDP4 HLA-L-211ENST00000482052 1765 ntBASIC19.11■□□□□ 0.65
ZNF439Q8NDP4 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
ZNF439Q8NDP4 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC19.1■□□□□ 0.65
ZNF439Q8NDP4 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
ZNF439Q8NDP4 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
ZNF439Q8NDP4 DUX4L18-201ENST00000553347 1267 ntBASIC19.1■□□□□ 0.65
ZNF439Q8NDP4 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC19.1■□□□□ 0.65
ZNF439Q8NDP4 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC19.1■□□□□ 0.65
ZNF439Q8NDP4 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC19.1■□□□□ 0.65
ZNF439Q8NDP4 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
ZNF439Q8NDP4 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC19.1■□□□□ 0.65
ZNF439Q8NDP4 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
ZNF439Q8NDP4 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
ZNF439Q8NDP4 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
ZNF439Q8NDP4 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
ZNF439Q8NDP4 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
ZNF439Q8NDP4 HYI-210ENST00000486909 905 ntTSL 5 BASIC19.09■□□□□ 0.65
ZNF439Q8NDP4 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC19.09■□□□□ 0.65
ZNF439Q8NDP4 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
ZNF439Q8NDP4 TMEM202-AS1-202ENST00000565181 2325 ntBASIC19.09■□□□□ 0.65
ZNF439Q8NDP4 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC19.09■□□□□ 0.65
ZNF439Q8NDP4 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
ZNF439Q8NDP4 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
ZNF439Q8NDP4 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
ZNF439Q8NDP4 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC19.08■□□□□ 0.65
ZNF439Q8NDP4 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC19.08■□□□□ 0.65
ZNF439Q8NDP4 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC19.08■□□□□ 0.64
ZNF439Q8NDP4 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC19.08■□□□□ 0.64
ZNF439Q8NDP4 AC004987.1-201ENST00000428627 508 ntBASIC19.08■□□□□ 0.64
ZNF439Q8NDP4 ATP5G2P3-201ENST00000429083 425 ntBASIC19.08■□□□□ 0.64
ZNF439Q8NDP4 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.64
ZNF439Q8NDP4 AC019171.1-201ENST00000601251 1056 ntBASIC19.08■□□□□ 0.64
ZNF439Q8NDP4 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
ZNF439Q8NDP4 AC090877.2-201ENST00000558441 1738 ntBASIC19.08■□□□□ 0.64
ZNF439Q8NDP4 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
ZNF439Q8NDP4 LTK-203ENST00000453182 2412 ntTSL 2 BASIC19.08■□□□□ 0.64
ZNF439Q8NDP4 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC19.07■□□□□ 0.64
ZNF439Q8NDP4 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC19.07■□□□□ 0.64
ZNF439Q8NDP4 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC19.07■□□□□ 0.64
ZNF439Q8NDP4 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
ZNF439Q8NDP4 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC19.07■□□□□ 0.64
ZNF439Q8NDP4 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC19.07■□□□□ 0.64
ZNF439Q8NDP4 SSSCA1-AS1-201ENST00000567594 614 ntBASIC19.07■□□□□ 0.64
ZNF439Q8NDP4 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
ZNF439Q8NDP4 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
ZNF439Q8NDP4 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
ZNF439Q8NDP4 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
ZNF439Q8NDP4 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
ZNF439Q8NDP4 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC19.07■□□□□ 0.64
ZNF439Q8NDP4 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
ZNF439Q8NDP4 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
ZNF439Q8NDP4 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
ZNF439Q8NDP4 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC19.06■□□□□ 0.64
ZNF439Q8NDP4 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
ZNF439Q8NDP4 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
ZNF439Q8NDP4 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC19.06■□□□□ 0.64
ZNF439Q8NDP4 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC19.06■□□□□ 0.64
ZNF439Q8NDP4 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
ZNF439Q8NDP4 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC19.06■□□□□ 0.64
ZNF439Q8NDP4 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
ZNF439Q8NDP4 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
ZNF439Q8NDP4 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
ZNF439Q8NDP4 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
ZNF439Q8NDP4 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
ZNF439Q8NDP4 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
ZNF439Q8NDP4 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
ZNF439Q8NDP4 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC19.05■□□□□ 0.64
ZNF439Q8NDP4 AC139795.1-202ENST00000500444 432 ntBASIC19.05■□□□□ 0.64
ZNF439Q8NDP4 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC19.05■□□□□ 0.64
ZNF439Q8NDP4 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
ZNF439Q8NDP4 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
ZNF439Q8NDP4 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
ZNF439Q8NDP4 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC19.05■□□□□ 0.64
ZNF439Q8NDP4 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
ZNF439Q8NDP4 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC19.04■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 51.5 ms