Protein–RNA interactions for Protein: Q33E94

RFX4, Transcription factor RFX4, humanhuman

Predictions only

Length 735 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX4Q33E94 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC14.53□□□□□ -0.08
RFX4Q33E94 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
RFX4Q33E94 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC14.53□□□□□ -0.08
RFX4Q33E94 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
RFX4Q33E94 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
RFX4Q33E94 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC14.53□□□□□ -0.08
RFX4Q33E94 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC14.53□□□□□ -0.08
RFX4Q33E94 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC14.53□□□□□ -0.08
RFX4Q33E94 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC14.53□□□□□ -0.08
RFX4Q33E94 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC14.53□□□□□ -0.08
RFX4Q33E94 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC14.53□□□□□ -0.08
RFX4Q33E94 AC018845.2-201ENST00000568326 409 ntBASIC14.53□□□□□ -0.08
RFX4Q33E94 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
RFX4Q33E94 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
RFX4Q33E94 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC14.53□□□□□ -0.08
RFX4Q33E94 RSPRY1-202ENST00000537866 3586 ntAPPRIS P1 TSL 2 BASIC14.53□□□□□ -0.08
RFX4Q33E94 NELFA-202ENST00000382882 3343 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
RFX4Q33E94 CLCN1-201ENST00000343257 3172 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
RFX4Q33E94 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC14.53□□□□□ -0.08
RFX4Q33E94 SNAP91-213ENST00000521485 4521 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
RFX4Q33E94 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC14.53□□□□□ -0.08
RFX4Q33E94 TBC1D8B-203ENST00000357242 5717 ntAPPRIS P2 TSL 1 (best) BASIC14.53□□□□□ -0.08
RFX4Q33E94 KLF11-205ENST00000535335 4033 ntAPPRIS ALT2 TSL 2 BASIC14.53□□□□□ -0.08
RFX4Q33E94 SPRY4-202ENST00000434127 2379 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
RFX4Q33E94 PEX26-205ENST00000610387 3924 ntTSL 5 BASIC14.53□□□□□ -0.08
RFX4Q33E94 EIF4G1-218ENST00000434061 5026 ntTSL 2 BASIC14.53□□□□□ -0.08
RFX4Q33E94 GTF2IRD1-201ENST00000265755 3430 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
RFX4Q33E94 HIPK3-201ENST00000303296 7408 ntTSL 5 BASIC14.53□□□□□ -0.08
RFX4Q33E94 UBXN11-206ENST00000374222 2043 ntAPPRIS P4 TSL 5 BASIC14.53□□□□□ -0.08
RFX4Q33E94 ANO10-213ENST00000451430 2019 ntTSL 2 BASIC14.53□□□□□ -0.08
RFX4Q33E94 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC14.53□□□□□ -0.08
RFX4Q33E94 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
RFX4Q33E94 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC14.52□□□□□ -0.08
RFX4Q33E94 TDRD10-201ENST00000368480 1776 ntAPPRIS ALT2 TSL 2 BASIC14.52□□□□□ -0.08
RFX4Q33E94 RIC1-201ENST00000251879 4127 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
RFX4Q33E94 NKIRAS2-201ENST00000307641 2948 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
RFX4Q33E94 MED16-203ENST00000325464 2922 ntAPPRIS P2 TSL 5 BASIC14.52□□□□□ -0.08
RFX4Q33E94 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
RFX4Q33E94 ATE1-203ENST00000369043 4900 ntAPPRIS ALT1 TSL 1 (best) BASIC14.52□□□□□ -0.08
RFX4Q33E94 SYNPO2L-202ENST00000394810 4921 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
RFX4Q33E94 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.08
RFX4Q33E94 TMEM38A-201ENST00000187762 2649 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
RFX4Q33E94 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
RFX4Q33E94 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.08
RFX4Q33E94 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC14.52□□□□□ -0.08
RFX4Q33E94 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
RFX4Q33E94 ZNF384-202ENST00000355772 2514 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
RFX4Q33E94 GAD2-201ENST00000259271 2462 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
RFX4Q33E94 GPR84-201ENST00000267015 1497 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
RFX4Q33E94 TGIF2-202ENST00000373874 3432 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.08
RFX4Q33E94 TELO2-201ENST00000262319 3314 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
RFX4Q33E94 OTOF-202ENST00000338581 4954 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
RFX4Q33E94 SCFD2-201ENST00000388940 2221 ntTSL 2 BASIC14.52□□□□□ -0.08
RFX4Q33E94 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC14.52□□□□□ -0.08
RFX4Q33E94 HLA-A-201ENST00000376802 1334 ntBASIC14.52□□□□□ -0.08
RFX4Q33E94 HIPK3-203ENST00000456517 7399 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.08
RFX4Q33E94 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.09
RFX4Q33E94 HNRNPH1-201ENST00000329433 2114 ntTSL 2 BASIC14.52□□□□□ -0.09
RFX4Q33E94 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC14.52□□□□□ -0.09
RFX4Q33E94 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC14.52□□□□□ -0.09
RFX4Q33E94 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC14.52□□□□□ -0.09
RFX4Q33E94 KRT18P2-201ENST00000447938 1258 ntBASIC14.52□□□□□ -0.09
RFX4Q33E94 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC14.52□□□□□ -0.09
RFX4Q33E94 AC074386.1-202ENST00000463561 864 ntBASIC14.52□□□□□ -0.09
RFX4Q33E94 SMN2-210ENST00000511812 867 ntTSL 2 BASIC14.52□□□□□ -0.09
RFX4Q33E94 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
RFX4Q33E94 AC145285.3-201ENST00000564603 959 ntBASIC14.52□□□□□ -0.09
RFX4Q33E94 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC14.52□□□□□ -0.09
RFX4Q33E94 PAM16-215ENST00000577031 548 ntTSL 4 BASIC14.52□□□□□ -0.09
RFX4Q33E94 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC14.52□□□□□ -0.09
RFX4Q33E94 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC14.52□□□□□ -0.09
RFX4Q33E94 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC14.52□□□□□ -0.09
RFX4Q33E94 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
RFX4Q33E94 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC14.52□□□□□ -0.09
RFX4Q33E94 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC14.52□□□□□ -0.09
RFX4Q33E94 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC14.52□□□□□ -0.09
RFX4Q33E94 ST7L-202ENST00000358039 4528 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
RFX4Q33E94 ZSWIM8-221ENST00000604729 6075 ntAPPRIS ALT1 TSL 5 BASIC14.52□□□□□ -0.09
RFX4Q33E94 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC14.52□□□□□ -0.09
RFX4Q33E94 UBE2I-201ENST00000325437 2832 ntAPPRIS P1 TSL 3 BASIC14.52□□□□□ -0.09
RFX4Q33E94 RPRD1A-202ENST00000399022 4438 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
RFX4Q33E94 PLA2G4B-202ENST00000458483 2734 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.09
RFX4Q33E94 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC14.52□□□□□ -0.09
RFX4Q33E94 DBR1-201ENST00000260803 2666 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
RFX4Q33E94 PKIA-202ENST00000396418 4163 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.09
RFX4Q33E94 ZMYM3-204ENST00000373982 1867 ntTSL 5 BASIC14.52□□□□□ -0.09
RFX4Q33E94 NEDD4L-202ENST00000356462 3335 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
RFX4Q33E94 SH3KBP1-205ENST00000397821 4731 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
RFX4Q33E94 ANKLE1-201ENST00000394458 3218 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
RFX4Q33E94 ABR-228ENST00000574437 3196 ntTSL 5 BASIC14.52□□□□□ -0.09
RFX4Q33E94 TRIM46-202ENST00000368382 3127 ntTSL 2 BASIC14.52□□□□□ -0.09
RFX4Q33E94 SORCS1-201ENST00000263054 7272 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
RFX4Q33E94 ZMYND15-202ENST00000433935 2411 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.09
RFX4Q33E94 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC14.52□□□□□ -0.09
RFX4Q33E94 NARF-206ENST00000457415 1668 ntTSL 5 BASIC14.52□□□□□ -0.09
RFX4Q33E94 TUSC3-201ENST00000382020 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC14.52□□□□□ -0.09
RFX4Q33E94 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
RFX4Q33E94 HBP1-201ENST00000222574 2829 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
RFX4Q33E94 MBD1-209ENST00000398495 2178 ntTSL 5 BASIC14.51□□□□□ -0.09
RFX4Q33E94 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC14.51□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 35.3 ms