Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 RP1L1-202ENST00000382483 7973 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
SMKR1H3BMG3 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
SMKR1H3BMG3 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
SMKR1H3BMG3 JARID2-202ENST00000397311 5595 ntAPPRIS ALT2 TSL 2 BASIC11.44□□□□□ -0.58
SMKR1H3BMG3 CEMIP-201ENST00000220244 7226 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
SMKR1H3BMG3 CORO7-201ENST00000251166 3540 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
SMKR1H3BMG3 IQCE-201ENST00000325979 2179 ntAPPRIS ALT2 TSL 5 BASIC11.44□□□□□ -0.58
SMKR1H3BMG3 AC136759.1-202ENST00000530858 2194 ntBASIC11.44□□□□□ -0.58
SMKR1H3BMG3 SLC25A29-208ENST00000554912 5169 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
SMKR1H3BMG3 EVC2-201ENST00000310917 4828 ntAPPRIS ALT2 TSL 1 (best) BASIC11.44□□□□□ -0.58
SMKR1H3BMG3 AP1B1-208ENST00000432560 4146 ntAPPRIS P1 TSL 5 BASIC11.44□□□□□ -0.58
SMKR1H3BMG3 CLIP2-203ENST00000395060 3141 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
SMKR1H3BMG3 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC11.44□□□□□ -0.58
SMKR1H3BMG3 VILL-202ENST00000383759 2787 ntAPPRIS P1 TSL 5 BASIC11.44□□□□□ -0.58
SMKR1H3BMG3 PODN-207ENST00000618387 3065 ntAPPRIS ALT2 TSL 2 BASIC11.44□□□□□ -0.58
SMKR1H3BMG3 LATS1-207ENST00000543571 7517 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
SMKR1H3BMG3 E2F7-202ENST00000416496 5297 ntTSL 5 BASIC11.44□□□□□ -0.58
SMKR1H3BMG3 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC11.43□□□□□ -0.58
SMKR1H3BMG3 RIC1-203ENST00000414202 6774 ntAPPRIS P1 TSL 5 BASIC11.43□□□□□ -0.58
SMKR1H3BMG3 UBE2D1-201ENST00000373910 2659 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
SMKR1H3BMG3 GPRC5C-202ENST00000392627 2988 ntAPPRIS P3 TSL 1 (best) BASIC11.43□□□□□ -0.58
SMKR1H3BMG3 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
SMKR1H3BMG3 SIMC1-205ENST00000443967 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC11.43□□□□□ -0.58
SMKR1H3BMG3 MCM9-202ENST00000316316 5101 ntAPPRIS P1 TSL 5 BASIC11.43□□□□□ -0.58
SMKR1H3BMG3 GLIPR1L2-204ENST00000550916 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC11.43□□□□□ -0.58
SMKR1H3BMG3 IER3-202ENST00000376377 1350 ntBASIC11.43□□□□□ -0.58
SMKR1H3BMG3 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC11.43□□□□□ -0.58
SMKR1H3BMG3 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC11.43□□□□□ -0.58
SMKR1H3BMG3 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC11.43□□□□□ -0.58
SMKR1H3BMG3 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
SMKR1H3BMG3 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
SMKR1H3BMG3 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC11.43□□□□□ -0.58
SMKR1H3BMG3 REXO1L1P-202ENST00000608646 1974 ntBASIC11.43□□□□□ -0.58
SMKR1H3BMG3 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC11.43□□□□□ -0.58
SMKR1H3BMG3 WDR77-201ENST00000235090 2576 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
SMKR1H3BMG3 TTLL4-212ENST00000457313 3723 ntTSL 2 BASIC11.43□□□□□ -0.58
SMKR1H3BMG3 ADAM15-206ENST00000368412 2804 ntAPPRIS ALT2 TSL 1 (best) BASIC11.43□□□□□ -0.58
SMKR1H3BMG3 SCFD2-201ENST00000388940 2221 ntTSL 2 BASIC11.43□□□□□ -0.58
SMKR1H3BMG3 PRDM16-206ENST00000511072 4282 ntAPPRIS ALT2 TSL 5 BASIC11.43□□□□□ -0.58
SMKR1H3BMG3 RADIL-201ENST00000399583 3689 ntAPPRIS P1 TSL 5 BASIC11.43□□□□□ -0.58
SMKR1H3BMG3 TARDBP-201ENST00000240185 5367 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
SMKR1H3BMG3 ATP13A1-202ENST00000357324 3861 ntAPPRIS P2 TSL 1 (best) BASIC11.43□□□□□ -0.58
SMKR1H3BMG3 ZNF133-203ENST00000377671 2701 ntAPPRIS P3 TSL 1 (best) BASIC11.43□□□□□ -0.58
SMKR1H3BMG3 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
SMKR1H3BMG3 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
SMKR1H3BMG3 BNIP3P1-202ENST00000550043 1585 ntBASIC11.43□□□□□ -0.58
SMKR1H3BMG3 SLC19A1-201ENST00000311124 3811 ntAPPRIS P3 TSL 1 (best) BASIC11.43□□□□□ -0.58
SMKR1H3BMG3 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC11.43□□□□□ -0.58
SMKR1H3BMG3 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC11.43□□□□□ -0.58
SMKR1H3BMG3 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC11.43□□□□□ -0.58
SMKR1H3BMG3 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC11.43□□□□□ -0.58
SMKR1H3BMG3 LAGE3P1-201ENST00000425356 484 ntBASIC11.43□□□□□ -0.58
SMKR1H3BMG3 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
SMKR1H3BMG3 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
SMKR1H3BMG3 KRT18P34-201ENST00000488218 1270 ntBASIC11.43□□□□□ -0.58
SMKR1H3BMG3 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC11.43□□□□□ -0.58
SMKR1H3BMG3 PAM16-208ENST00000573553 722 ntTSL 2 BASIC11.43□□□□□ -0.58
SMKR1H3BMG3 MIR3909-201ENST00000579518 119 ntBASIC11.43□□□□□ -0.58
SMKR1H3BMG3 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC11.43□□□□□ -0.58
SMKR1H3BMG3 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
SMKR1H3BMG3 AC008608.2-201ENST00000606089 416 ntBASIC11.43□□□□□ -0.58
SMKR1H3BMG3 GOLGA2-212ENST00000609374 2973 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
SMKR1H3BMG3 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC11.43□□□□□ -0.58
SMKR1H3BMG3 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC11.43□□□□□ -0.58
SMKR1H3BMG3 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC11.43□□□□□ -0.58
SMKR1H3BMG3 C4B-201ENST00000425700 5237 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
SMKR1H3BMG3 CHRNA3-201ENST00000326828 3202 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
SMKR1H3BMG3 ELK4-202ENST00000357992 10239 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
SMKR1H3BMG3 OR2C3-201ENST00000366487 8467 ntAPPRIS P1 BASIC11.43□□□□□ -0.58
SMKR1H3BMG3 ZBTB45P2-201ENST00000452245 1531 ntBASIC11.43□□□□□ -0.58
SMKR1H3BMG3 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC11.43□□□□□ -0.58
SMKR1H3BMG3 SACM1L-201ENST00000389061 3723 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
SMKR1H3BMG3 SLC43A2-201ENST00000301335 8136 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
SMKR1H3BMG3 IFNAR2-202ENST00000342136 2899 ntAPPRIS P4 TSL 1 (best) BASIC11.43□□□□□ -0.58
SMKR1H3BMG3 SLC35A3-209ENST00000638338 2890 ntTSL 5 BASIC11.43□□□□□ -0.58
SMKR1H3BMG3 AC073439.1-201ENST00000624121 1774 ntBASIC11.43□□□□□ -0.58
SMKR1H3BMG3 FOXD4L5-201ENST00000377420 3109 ntAPPRIS P1 BASIC11.43□□□□□ -0.58
SMKR1H3BMG3 HDAC2-206ENST00000519108 2000 ntTSL 2 BASIC11.43□□□□□ -0.58
SMKR1H3BMG3 ABCA2-203ENST00000371605 8151 ntAPPRIS ALT2 TSL 2 BASIC11.43□□□□□ -0.58
SMKR1H3BMG3 PTPN23-201ENST00000265562 5244 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
SMKR1H3BMG3 PIK3R5-219ENST00000616147 4377 ntTSL 5 BASIC11.43□□□□□ -0.58
SMKR1H3BMG3 LRRFIP1-203ENST00000308482 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC11.43□□□□□ -0.58
SMKR1H3BMG3 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC11.43□□□□□ -0.58
SMKR1H3BMG3 TNIK-204ENST00000436636 6970 ntAPPRIS P3 TSL 1 (best) BASIC11.43□□□□□ -0.58
SMKR1H3BMG3 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC11.43□□□□□ -0.58
SMKR1H3BMG3 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC11.43□□□□□ -0.58
SMKR1H3BMG3 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC11.43□□□□□ -0.58
SMKR1H3BMG3 POLG-201ENST00000268124 4500 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
SMKR1H3BMG3 THBS4-201ENST00000350881 3222 ntAPPRIS P3 TSL 1 (best) BASIC11.43□□□□□ -0.58
SMKR1H3BMG3 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC11.43□□□□□ -0.58
SMKR1H3BMG3 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC11.43□□□□□ -0.58
SMKR1H3BMG3 MINPP1-202ENST00000371996 2415 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
SMKR1H3BMG3 NDRG4-217ENST00000562999 2931 ntTSL 5 BASIC11.42□□□□□ -0.58
SMKR1H3BMG3 RPS6KC1-208ENST00000614059 4188 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
SMKR1H3BMG3 FUCA2-201ENST00000002165 2356 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
SMKR1H3BMG3 PLIN4-201ENST00000301286 6353 ntAPPRIS P2 TSL 5 BASIC11.42□□□□□ -0.58
SMKR1H3BMG3 SWAP70-201ENST00000318950 4882 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
SMKR1H3BMG3 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
SMKR1H3BMG3 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC11.42□□□□□ -0.58
SMKR1H3BMG3 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC11.42□□□□□ -0.58
Retrieved 100 of 98,524 protein–RNA pairs in 35.6 ms