Protein–RNA interactions for Protein: Q709C8

VPS13C, Vacuolar protein sorting-associated protein 13C, humanhuman

Predictions only

Length 3,753 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13CQ709C8 SPACA3-201ENST00000269053 817 ntAPPRIS P2 TSL 1 (best) BASIC12.69□□□□□ -0.38
VPS13CQ709C8 CALCA-203ENST00000396372 581 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
VPS13CQ709C8 PUS10-202ENST00000398658 1227 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
VPS13CQ709C8 AC131097.3-203ENST00000420272 1193 ntTSL 5 BASIC12.69□□□□□ -0.38
VPS13CQ709C8 NDUFC1-210ENST00000539387 725 ntAPPRIS P1 TSL 2 BASIC12.69□□□□□ -0.38
VPS13CQ709C8 SPACA3-205ENST00000580599 949 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
VPS13CQ709C8 MIR4313-201ENST00000580760 101 ntBASIC12.69□□□□□ -0.38
VPS13CQ709C8 MIR6842-201ENST00000612539 65 ntBASIC12.69□□□□□ -0.38
VPS13CQ709C8 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
VPS13CQ709C8 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
VPS13CQ709C8 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
VPS13CQ709C8 BNIP1-201ENST00000231668 1339 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
VPS13CQ709C8 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
VPS13CQ709C8 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
VPS13CQ709C8 PPIL3-201ENST00000286175 1370 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
VPS13CQ709C8 LINC00680-205ENST00000450081 1593 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
VPS13CQ709C8 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC12.68□□□□□ -0.38
VPS13CQ709C8 CYP51A1P3-201ENST00000400072 1428 ntBASIC12.68□□□□□ -0.38
VPS13CQ709C8 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC12.68□□□□□ -0.38
VPS13CQ709C8 FMR1NB-201ENST00000370467 1021 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
VPS13CQ709C8 GTF2A2-205ENST00000396064 633 ntTSL 3 BASIC12.68□□□□□ -0.38
VPS13CQ709C8 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
VPS13CQ709C8 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC12.68□□□□□ -0.38
VPS13CQ709C8 GTF2A2-208ENST00000484743 408 ntTSL 2 BASIC12.68□□□□□ -0.38
VPS13CQ709C8 FAM153B-214ENST00000512862 1071 ntAPPRIS ALT2 TSL 2 BASIC12.68□□□□□ -0.38
VPS13CQ709C8 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC12.68□□□□□ -0.38
VPS13CQ709C8 AC092171.5-201ENST00000608012 942 ntBASIC12.68□□□□□ -0.38
VPS13CQ709C8 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC12.68□□□□□ -0.38
VPS13CQ709C8 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC12.68□□□□□ -0.38
VPS13CQ709C8 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC12.68□□□□□ -0.38
VPS13CQ709C8 TUBA3D-201ENST00000321253 1546 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
VPS13CQ709C8 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
VPS13CQ709C8 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
VPS13CQ709C8 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
VPS13CQ709C8 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
VPS13CQ709C8 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
VPS13CQ709C8 ERGIC3-203ENST00000357394 1357 ntAPPRIS P4 TSL 2 BASIC12.68□□□□□ -0.38
VPS13CQ709C8 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
VPS13CQ709C8 SMTNL1-202ENST00000527972 1649 ntAPPRIS P2 TSL 5 BASIC12.68□□□□□ -0.38
VPS13CQ709C8 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
VPS13CQ709C8 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
VPS13CQ709C8 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC12.68□□□□□ -0.38
VPS13CQ709C8 AC124067.4-201ENST00000519691 2379 ntBASIC12.68□□□□□ -0.38
VPS13CQ709C8 CYTH1-201ENST00000361101 3311 ntAPPRIS ALT1 TSL 1 (best) BASIC12.68□□□□□ -0.38
VPS13CQ709C8 CYTH1-202ENST00000446868 3311 ntAPPRIS ALT1 TSL 5 BASIC12.68□□□□□ -0.38
VPS13CQ709C8 RCHY1-202ENST00000380840 1735 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
VPS13CQ709C8 ASB3-202ENST00000394717 1734 ntTSL 2 BASIC12.68□□□□□ -0.38
VPS13CQ709C8 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
VPS13CQ709C8 RN7SKP214-201ENST00000364208 315 ntBASIC12.68□□□□□ -0.38
VPS13CQ709C8 LGALS3-204ENST00000554715 916 ntTSL 3 BASIC12.68□□□□□ -0.38
VPS13CQ709C8 AC004466.1-201ENST00000599515 1080 ntBASIC12.68□□□□□ -0.38
VPS13CQ709C8 XKRX-202ENST00000468904 2249 ntTSL 2 BASIC12.68□□□□□ -0.38
VPS13CQ709C8 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
VPS13CQ709C8 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
VPS13CQ709C8 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC12.68□□□□□ -0.38
VPS13CQ709C8 ZNRD1-201ENST00000332435 864 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
VPS13CQ709C8 LINC00313-205ENST00000427188 967 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
VPS13CQ709C8 AC005740.2-201ENST00000511085 419 ntBASIC12.68□□□□□ -0.38
VPS13CQ709C8 AC116345.2-201ENST00000512837 523 ntBASIC12.68□□□□□ -0.38
VPS13CQ709C8 EID1-202ENST00000560490 584 ntTSL 3 BASIC12.68□□□□□ -0.38
VPS13CQ709C8 UBL5-208ENST00000593087 320 ntTSL 3 BASIC12.68□□□□□ -0.38
VPS13CQ709C8 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC12.68□□□□□ -0.38
VPS13CQ709C8 MBLAC2-202ENST00000514906 1936 ntBASIC12.68□□□□□ -0.38
VPS13CQ709C8 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
VPS13CQ709C8 UBL7-201ENST00000361351 1360 ntAPPRIS P1 TSL 5 BASIC12.67□□□□□ -0.38
VPS13CQ709C8 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC12.67□□□□□ -0.38
VPS13CQ709C8 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
VPS13CQ709C8 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC12.67□□□□□ -0.38
VPS13CQ709C8 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC12.67□□□□□ -0.38
VPS13CQ709C8 SEC13-208ENST00000397109 1467 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
VPS13CQ709C8 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC12.67□□□□□ -0.38
VPS13CQ709C8 TANGO2-205ENST00000401886 1559 ntTSL 5 BASIC12.67□□□□□ -0.38
VPS13CQ709C8 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
VPS13CQ709C8 GAL-201ENST00000265643 818 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
VPS13CQ709C8 PSMB10-201ENST00000358514 1218 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
VPS13CQ709C8 CD8B-204ENST00000393759 1096 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
VPS13CQ709C8 GSTK1-202ENST00000409500 888 ntTSL 2 BASIC12.67□□□□□ -0.38
VPS13CQ709C8 AL138731.1-201ENST00000452624 739 ntTSL 3 BASIC12.67□□□□□ -0.38
VPS13CQ709C8 AP001547.1-201ENST00000527440 374 ntTSL 3 BASIC12.67□□□□□ -0.38
VPS13CQ709C8 AC005726.2-204ENST00000577790 511 ntAPPRIS ALT2 TSL 4 BASIC12.67□□□□□ -0.38
VPS13CQ709C8 NAT9-211ENST00000580632 799 ntTSL 3 BASIC12.67□□□□□ -0.38
VPS13CQ709C8 IRF3-225ENST00000600022 882 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
VPS13CQ709C8 FAM69C-202ENST00000400291 1329 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
VPS13CQ709C8 VWCE-205ENST00000535710 1437 ntTSL 2 BASIC12.67□□□□□ -0.38
VPS13CQ709C8 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
VPS13CQ709C8 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
VPS13CQ709C8 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
VPS13CQ709C8 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
VPS13CQ709C8 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC12.67□□□□□ -0.38
VPS13CQ709C8 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC12.67□□□□□ -0.38
VPS13CQ709C8 AMT-224ENST00000635808 1610 ntTSL 5 BASIC12.67□□□□□ -0.38
VPS13CQ709C8 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC12.67□□□□□ -0.38
VPS13CQ709C8 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC12.67□□□□□ -0.38
VPS13CQ709C8 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC12.67□□□□□ -0.38
VPS13CQ709C8 AQP6-204ENST00000615425 2245 ntAPPRIS P1 TSL 5 BASIC12.67□□□□□ -0.38
VPS13CQ709C8 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC12.67□□□□□ -0.38
VPS13CQ709C8 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
VPS13CQ709C8 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC12.67□□□□□ -0.38
VPS13CQ709C8 SOD2-202ENST00000367054 815 ntTSL 2 BASIC12.67□□□□□ -0.38
VPS13CQ709C8 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Retrieved 100 of 98,524 protein–RNA pairs in 51.8 ms