Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
SIX3O95343 PPM1E-201ENST00000308249 6542 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SIX3O95343 FRMPD4-201ENST00000380682 8465 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
SIX3O95343 GPER1-201ENST00000297469 2778 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SIX3O95343 FLJ16779-201ENST00000612722 7638 ntBASIC15.3■□□□□ 0.04
SIX3O95343 RPTOR-203ENST00000570891 2286 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
SIX3O95343 SYNGR2-207ENST00000590201 2239 ntTSL 5 BASIC15.29■□□□□ 0.04
SIX3O95343 CALD1-222ENST00000495522 2199 ntTSL 5 BASIC15.29■□□□□ 0.04
SIX3O95343 KCNG4-202ENST00000568181 2199 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
SIX3O95343 TM4SF4-201ENST00000305354 2101 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
SIX3O95343 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC15.29■□□□□ 0.04
SIX3O95343 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
SIX3O95343 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC15.29■□□□□ 0.04
SIX3O95343 OTUD7A-201ENST00000307050 10770 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
SIX3O95343 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC15.29■□□□□ 0.04
SIX3O95343 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
SIX3O95343 CAPN5-202ENST00000456580 2805 ntTSL 2 BASIC15.29■□□□□ 0.04
SIX3O95343 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
SIX3O95343 GOLGA6L17P-202ENST00000614358 1398 ntBASIC15.29■□□□□ 0.04
SIX3O95343 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
SIX3O95343 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
SIX3O95343 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
SIX3O95343 AC074338.1-201ENST00000416825 156 ntBASIC15.29■□□□□ 0.04
SIX3O95343 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC15.29■□□□□ 0.04
SIX3O95343 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
SIX3O95343 DHDH-204ENST00000523250 634 ntTSL 5 BASIC15.29■□□□□ 0.04
SIX3O95343 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
SIX3O95343 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC15.29■□□□□ 0.04
SIX3O95343 AL079307.3-201ENST00000556114 283 ntBASIC15.29■□□□□ 0.04
SIX3O95343 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC15.29■□□□□ 0.04
SIX3O95343 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
SIX3O95343 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC15.29■□□□□ 0.04
SIX3O95343 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC15.29■□□□□ 0.04
SIX3O95343 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC15.29■□□□□ 0.04
SIX3O95343 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC15.29■□□□□ 0.04
SIX3O95343 LINC00926-201ENST00000501726 2530 ntTSL 2 BASIC15.29■□□□□ 0.04
SIX3O95343 IL12RB2-206ENST00000544434 3782 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
SIX3O95343 UBC-205ENST00000536769 3745 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
SIX3O95343 DZIP1-203ENST00000361396 7418 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
SIX3O95343 FMNL1-206ENST00000587489 2487 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
SIX3O95343 KCTD15-201ENST00000284006 4918 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
SIX3O95343 EVPL-201ENST00000301607 6614 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
SIX3O95343 E2F6-202ENST00000381525 3218 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
SIX3O95343 VARS2-201ENST00000321897 4073 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
SIX3O95343 AL928970.1-201ENST00000422679 2923 ntTSL 5 BASIC15.29■□□□□ 0.04
SIX3O95343 PATZ1-204ENST00000405309 3711 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
SIX3O95343 IFT52-201ENST00000373030 1757 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
SIX3O95343 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
SIX3O95343 FECH-202ENST00000382873 2526 ntAPPRIS ALT2 TSL 2 BASIC15.28■□□□□ 0.04
SIX3O95343 RIPK1-201ENST00000259808 4160 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
SIX3O95343 FLI1-207ENST00000534087 3859 ntTSL 2 BASIC15.28■□□□□ 0.04
SIX3O95343 ZNF586-201ENST00000391702 2265 ntTSL 2 BASIC15.28■□□□□ 0.04
SIX3O95343 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
SIX3O95343 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
SIX3O95343 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
SIX3O95343 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC15.28■□□□□ 0.04
SIX3O95343 ZNF365-205ENST00000395254 4173 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
SIX3O95343 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
SIX3O95343 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
SIX3O95343 AZGP1-202ENST00000411734 2027 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
SIX3O95343 DHCR7-202ENST00000407721 2601 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
SIX3O95343 C4orf19-201ENST00000284437 1949 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
SIX3O95343 CNN3-207ENST00000545882 1902 ntTSL 2 BASIC15.28■□□□□ 0.04
SIX3O95343 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
SIX3O95343 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC15.28■□□□□ 0.04
SIX3O95343 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC15.28■□□□□ 0.04
SIX3O95343 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC15.28■□□□□ 0.04
SIX3O95343 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC15.28■□□□□ 0.04
SIX3O95343 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC15.28■□□□□ 0.04
SIX3O95343 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC15.28■□□□□ 0.04
SIX3O95343 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
SIX3O95343 KIAA2026-202ENST00000399933 6988 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
SIX3O95343 GPI-205ENST00000586425 1799 ntTSL 5 BASIC15.28■□□□□ 0.04
SIX3O95343 AGT-201ENST00000366667 2291 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
SIX3O95343 SLC30A5-209ENST00000621204 3999 ntTSL 5 BASIC15.28■□□□□ 0.04
SIX3O95343 SEC24D-202ENST00000419654 2786 ntTSL 5 BASIC15.28■□□□□ 0.04
SIX3O95343 MOCS1-201ENST00000340692 2747 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
SIX3O95343 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
SIX3O95343 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
SIX3O95343 LCOR-202ENST00000356016 4834 ntAPPRIS P3 TSL 2 BASIC15.28■□□□□ 0.04
SIX3O95343 C6orf120-201ENST00000332290 2667 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
SIX3O95343 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
SIX3O95343 LMNA-201ENST00000347559 3137 ntTSL 5 BASIC15.28■□□□□ 0.04
SIX3O95343 ARHGAP39-201ENST00000276826 4697 ntAPPRIS ALT2 TSL 2 BASIC15.28■□□□□ 0.04
SIX3O95343 ZNF79-201ENST00000342483 2078 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
SIX3O95343 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
SIX3O95343 AL353997.2-201ENST00000579352 4955 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
SIX3O95343 HDAC11-201ENST00000295757 2960 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
SIX3O95343 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC15.27■□□□□ 0.04
SIX3O95343 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC15.27■□□□□ 0.04
SIX3O95343 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
SIX3O95343 PLEKHA8-205ENST00000449726 7835 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
SIX3O95343 EFNB1-201ENST00000204961 3314 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
SIX3O95343 UBE2D3-207ENST00000394801 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC15.27■□□□□ 0.04
SIX3O95343 EXOG-201ENST00000287675 2792 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
SIX3O95343 YTHDC1-202ENST00000355665 3244 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
SIX3O95343 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC15.27■□□□□ 0.04
SIX3O95343 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
SIX3O95343 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC15.27■□□□□ 0.04
SIX3O95343 USH1C-207ENST00000527720 2278 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 60.5 ms