Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 ESPNL-201ENST00000343063 4836 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
SHOX2O60902 KRT36-202ENST00000393986 1707 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
SHOX2O60902 LINC01725-203ENST00000417975 3177 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
SHOX2O60902 BCL9L-202ENST00000526143 5514 ntTSL 5 BASIC15.67■□□□□ 0.1
SHOX2O60902 SLC1A7-202ENST00000371494 2637 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
SHOX2O60902 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC15.67■□□□□ 0.1
SHOX2O60902 TM9SF1-202ENST00000396854 2055 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
SHOX2O60902 RUSC1-204ENST00000368352 3403 ntAPPRIS ALT2 TSL 2 BASIC15.67■□□□□ 0.1
SHOX2O60902 PPP4R4-201ENST00000304338 3868 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SHOX2O60902 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
SHOX2O60902 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
SHOX2O60902 EIF4G3-212ENST00000602326 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
SHOX2O60902 SEPT6-201ENST00000343984 2693 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
SHOX2O60902 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SHOX2O60902 CACNA1A-221ENST00000636012 7500 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
SHOX2O60902 MLXIPL-201ENST00000313375 3278 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
SHOX2O60902 DLG4-203ENST00000399510 3975 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
SHOX2O60902 PTPN9-201ENST00000306726 3862 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
SHOX2O60902 FAM86B1-216ENST00000533852 2043 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
SHOX2O60902 CLPB-209ENST00000538039 3078 ntAPPRIS ALT1 TSL 2 BASIC15.66■□□□□ 0.1
SHOX2O60902 BRD1-205ENST00000457780 4997 ntTSL 5 BASIC15.66■□□□□ 0.1
SHOX2O60902 VILL-202ENST00000383759 2787 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
SHOX2O60902 GLB1L2-205ENST00000535456 3365 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SHOX2O60902 CALCB-203ENST00000533448 2097 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
SHOX2O60902 SF1-209ENST00000433274 2317 ntTSL 2 BASIC15.66■□□□□ 0.1
SHOX2O60902 FRZB-201ENST00000295113 3162 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SHOX2O60902 OSBPL2-201ENST00000313733 4009 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SHOX2O60902 ARSH-201ENST00000381130 1875 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SHOX2O60902 NAA60-202ENST00000407558 2735 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SHOX2O60902 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
SHOX2O60902 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
SHOX2O60902 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
SHOX2O60902 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC15.66■□□□□ 0.1
SHOX2O60902 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC15.66■□□□□ 0.1
SHOX2O60902 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SHOX2O60902 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
SHOX2O60902 AL805961.1-202ENST00000641562 540 ntBASIC15.66■□□□□ 0.1
SHOX2O60902 SP8-203ENST00000617581 3496 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
SHOX2O60902 GDF9-201ENST00000296875 1796 ntTSL 5 BASIC15.66■□□□□ 0.1
SHOX2O60902 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC15.66■□□□□ 0.1
SHOX2O60902 PNRC2-201ENST00000334351 2416 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SHOX2O60902 DYRK1B-202ENST00000348817 2448 ntTSL 5 BASIC15.66■□□□□ 0.1
SHOX2O60902 RAB6C-201ENST00000410061 3075 ntAPPRIS P1 BASIC15.66■□□□□ 0.1
SHOX2O60902 APCDD1L-AS1-203ENST00000427140 2092 ntTSL 2 BASIC15.66■□□□□ 0.1
SHOX2O60902 EIF4G1-206ENST00000392537 5229 ntTSL 2 BASIC15.66■□□□□ 0.1
SHOX2O60902 PLCD1-204ENST00000463876 2963 ntAPPRIS ALT1 TSL 2 BASIC15.66■□□□□ 0.1
SHOX2O60902 MINK1-201ENST00000347992 4863 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
SHOX2O60902 RRN3P3-202ENST00000551766 3366 ntTSL 2 BASIC15.66■□□□□ 0.1
SHOX2O60902 C15orf41-208ENST00000566621 2866 ntAPPRIS P3 TSL 5 BASIC15.65■□□□□ 0.1
SHOX2O60902 KLHL42-201ENST00000381271 6703 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
SHOX2O60902 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
SHOX2O60902 RIPK1-201ENST00000259808 4160 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
SHOX2O60902 CCDC187-205ENST00000638797 10126 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
SHOX2O60902 MAN2B1-203ENST00000456935 3184 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
SHOX2O60902 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC15.65■□□□□ 0.1
SHOX2O60902 RFTN1-203ENST00000432519 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
SHOX2O60902 IER3-202ENST00000376377 1350 ntBASIC15.65■□□□□ 0.1
SHOX2O60902 C2-206ENST00000442278 2434 ntTSL 2 BASIC15.65■□□□□ 0.1
SHOX2O60902 RB1CC1-202ENST00000435644 6614 ntAPPRIS ALT1 TSL 1 (best) BASIC15.65■□□□□ 0.1
SHOX2O60902 NPRL3-212ENST00000620134 3203 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
SHOX2O60902 SENP6-205ENST00000447266 6501 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
SHOX2O60902 FAM129B-202ENST00000373314 3760 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
SHOX2O60902 PDGFRL-201ENST00000251630 1901 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
SHOX2O60902 NUTM2G-201ENST00000354649 2851 ntAPPRIS P3 TSL 5 BASIC15.65■□□□□ 0.1
SHOX2O60902 FDFT1-223ENST00000615631 2462 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
SHOX2O60902 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC15.65■□□□□ 0.1
SHOX2O60902 ASB10-204ENST00000420175 1694 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
SHOX2O60902 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
SHOX2O60902 FGFR1-201ENST00000326324 3816 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
SHOX2O60902 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
SHOX2O60902 FGFR1-204ENST00000356207 3824 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
SHOX2O60902 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
SHOX2O60902 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC15.65■□□□□ 0.1
SHOX2O60902 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
SHOX2O60902 NUS1P2-201ENST00000417358 873 ntBASIC15.65■□□□□ 0.1
SHOX2O60902 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC15.65■□□□□ 0.1
SHOX2O60902 GHSR-202ENST00000427970 912 ntBASIC15.65■□□□□ 0.1
SHOX2O60902 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC15.65■□□□□ 0.1
SHOX2O60902 AC243562.2-201ENST00000561247 970 ntBASIC15.65■□□□□ 0.1
SHOX2O60902 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC15.65■□□□□ 0.1
SHOX2O60902 NME3-204ENST00000563498 920 ntTSL 2 BASIC15.65■□□□□ 0.1
SHOX2O60902 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC15.65■□□□□ 0.1
SHOX2O60902 AC087388.1-201ENST00000571370 1112 ntBASIC15.65■□□□□ 0.1
SHOX2O60902 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
SHOX2O60902 AC099336.1-202ENST00000602961 463 ntBASIC15.65■□□□□ 0.1
SHOX2O60902 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC15.65■□□□□ 0.1
SHOX2O60902 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC15.65■□□□□ 0.1
SHOX2O60902 MKNK1-203ENST00000371945 2618 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
SHOX2O60902 EPHA2-201ENST00000358432 3964 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
SHOX2O60902 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC15.65■□□□□ 0.1
SHOX2O60902 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
SHOX2O60902 FOXRED2-201ENST00000216187 3933 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
SHOX2O60902 DRD2-201ENST00000346454 2433 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
SHOX2O60902 RMDN3-201ENST00000260385 3138 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
SHOX2O60902 SCD5-202ENST00000319540 3101 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
SHOX2O60902 SLCO2B1-217ENST00000532236 2593 ntAPPRIS ALT2 TSL 2 BASIC15.65■□□□□ 0.1
SHOX2O60902 HECTD1-201ENST00000399332 9134 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
SHOX2O60902 NDRG4-221ENST00000563799 3014 ntAPPRIS ALT1 TSL 2 BASIC15.65■□□□□ 0.1
SHOX2O60902 CARMIL3-201ENST00000342740 4597 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
SHOX2O60902 ST3GAL5-203ENST00000393805 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 35 ms