Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC12.67□□□□□ -0.38
HMGB3O15347 MAGIX-208ENST00000616266 3295 ntAPPRIS ALT2 TSL 5 BASIC12.67□□□□□ -0.38
HMGB3O15347 CALD1-222ENST00000495522 2199 ntTSL 5 BASIC12.67□□□□□ -0.38
HMGB3O15347 CDH20-201ENST00000262717 3882 ntAPPRIS P1 TSL 2 BASIC12.67□□□□□ -0.38
HMGB3O15347 CBFA2T3-202ENST00000327483 4033 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
HMGB3O15347 IL21R-AS1-201ENST00000563191 2615 ntTSL 2 BASIC12.67□□□□□ -0.38
HMGB3O15347 NXF1-213ENST00000532297 2795 ntAPPRIS P1 TSL 5 BASIC12.67□□□□□ -0.38
HMGB3O15347 FAHD2A-201ENST00000233379 4757 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
HMGB3O15347 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
HMGB3O15347 AC016734.2-201ENST00000624325 1377 ntBASIC12.67□□□□□ -0.38
HMGB3O15347 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
HMGB3O15347 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC12.67□□□□□ -0.38
HMGB3O15347 CEP78-203ENST00000376598 2404 ntAPPRIS ALT2 TSL 5 BASIC12.67□□□□□ -0.38
HMGB3O15347 SLC26A11-201ENST00000361193 2885 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
HMGB3O15347 COL9A2-202ENST00000372748 2862 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
HMGB3O15347 RNF182-208ENST00000544682 3495 ntAPPRIS P1 TSL 4 BASIC12.67□□□□□ -0.38
HMGB3O15347 ARAP1-204ENST00000393609 5145 ntAPPRIS ALT2 TSL 2 BASIC12.67□□□□□ -0.38
HMGB3O15347 CEP131-208ENST00000575907 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
HMGB3O15347 DNAJC13-201ENST00000260818 7730 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
HMGB3O15347 DMTN-205ENST00000432128 2508 ntTSL 5 BASIC12.66□□□□□ -0.38
HMGB3O15347 YTHDC1-201ENST00000344157 6232 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
HMGB3O15347 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
HMGB3O15347 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC12.66□□□□□ -0.38
HMGB3O15347 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
HMGB3O15347 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC12.66□□□□□ -0.38
HMGB3O15347 CCNF-202ENST00000397066 4283 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
HMGB3O15347 ARHGAP4-203ENST00000370028 3372 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
HMGB3O15347 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
HMGB3O15347 AZGP1-202ENST00000411734 2027 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
HMGB3O15347 STARD13-202ENST00000336934 5917 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
HMGB3O15347 LPAR5-201ENST00000329858 3171 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
HMGB3O15347 SPIRE1-201ENST00000309836 1877 ntTSL 2 BASIC12.66□□□□□ -0.38
HMGB3O15347 AC148477.2-201ENST00000537762 3039 ntTSL 3 BASIC12.66□□□□□ -0.38
HMGB3O15347 SEPT8-206ENST00000378706 4168 ntAPPRIS ALT1 TSL 5 BASIC12.66□□□□□ -0.38
HMGB3O15347 ERI1-209ENST00000523898 5036 ntAPPRIS P1 TSL 5 BASIC12.66□□□□□ -0.38
HMGB3O15347 RRBP1-201ENST00000246043 4737 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
HMGB3O15347 RAPGEF6-207ENST00000507093 5742 ntAPPRIS ALT1 TSL 1 (best) BASIC12.66□□□□□ -0.38
HMGB3O15347 BCL2L13-214ENST00000543133 4975 ntTSL 2 BASIC12.66□□□□□ -0.38
HMGB3O15347 BCL2L13-217ENST00000618481 4961 ntAPPRIS ALT2 TSL 5 BASIC12.66□□□□□ -0.38
HMGB3O15347 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
HMGB3O15347 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
HMGB3O15347 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
HMGB3O15347 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
HMGB3O15347 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC12.66□□□□□ -0.38
HMGB3O15347 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC12.66□□□□□ -0.38
HMGB3O15347 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC12.66□□□□□ -0.38
HMGB3O15347 AC063952.2-201ENST00000498792 1227 ntBASIC12.66□□□□□ -0.38
HMGB3O15347 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
HMGB3O15347 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC12.66□□□□□ -0.38
HMGB3O15347 AL139424.1-201ENST00000607572 797 ntBASIC12.66□□□□□ -0.38
HMGB3O15347 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC12.66□□□□□ -0.38
HMGB3O15347 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC12.66□□□□□ -0.38
HMGB3O15347 ARHGAP9-213ENST00000550288 2818 ntTSL 2 BASIC12.66□□□□□ -0.38
HMGB3O15347 HSDL1-201ENST00000219439 3519 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
HMGB3O15347 UBN1-202ENST00000396658 6336 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
HMGB3O15347 TRAF6-202ENST00000526995 4627 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
HMGB3O15347 GTF2IP13-202ENST00000609439 10247 ntTSL 5 BASIC12.66□□□□□ -0.38
HMGB3O15347 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC12.66□□□□□ -0.38
HMGB3O15347 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
HMGB3O15347 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC12.66□□□□□ -0.38
HMGB3O15347 GPAT3-201ENST00000264409 2625 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
HMGB3O15347 STIP1-207ENST00000538945 1900 ntTSL 2 BASIC12.66□□□□□ -0.38
HMGB3O15347 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC12.66□□□□□ -0.38
HMGB3O15347 C5orf66-206ENST00000624272 2479 ntTSL 2 BASIC12.66□□□□□ -0.38
HMGB3O15347 C16orf52-202ENST00000542527 4360 ntAPPRIS P1 TSL 5 BASIC12.66□□□□□ -0.38
HMGB3O15347 GPI-205ENST00000586425 1799 ntTSL 5 BASIC12.66□□□□□ -0.38
HMGB3O15347 CPSF7-202ENST00000394888 3650 ntAPPRIS P4 TSL 2 BASIC12.66□□□□□ -0.38
HMGB3O15347 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
HMGB3O15347 RCSD1-202ENST00000367854 3135 ntAPPRIS P3 TSL 1 (best) BASIC12.66□□□□□ -0.38
HMGB3O15347 TTLL10-AS1-201ENST00000379317 3532 ntTSL 2 BASIC12.66□□□□□ -0.38
HMGB3O15347 ARMC5-205ENST00000563544 3549 ntAPPRIS ALT2 TSL 2 BASIC12.66□□□□□ -0.38
HMGB3O15347 SULF1-202ENST00000402687 4891 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
HMGB3O15347 TNS2-203ENST00000379902 4737 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
HMGB3O15347 PIGS-203ENST00000395346 2815 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
HMGB3O15347 LPO-210ENST00000582328 2680 ntAPPRIS ALT2 TSL 5 BASIC12.65□□□□□ -0.38
HMGB3O15347 UBAP1-202ENST00000359544 2535 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
HMGB3O15347 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
HMGB3O15347 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
HMGB3O15347 DDX20-201ENST00000369702 4212 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
HMGB3O15347 SAMD4A-201ENST00000251091 6565 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
HMGB3O15347 CLUAP1-202ENST00000571025 5126 ntTSL 2 BASIC12.65□□□□□ -0.38
HMGB3O15347 GJD2-201ENST00000290374 2889 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
HMGB3O15347 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC12.65□□□□□ -0.38
HMGB3O15347 GPR17-201ENST00000272644 2062 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
HMGB3O15347 BTRC-203ENST00000393441 6084 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
HMGB3O15347 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
HMGB3O15347 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
HMGB3O15347 MAP3K11-208ENST00000530153 2830 ntTSL 2 BASIC12.65□□□□□ -0.38
HMGB3O15347 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
HMGB3O15347 MED16-201ENST00000269814 1199 ntTSL 5 BASIC12.65□□□□□ -0.38
HMGB3O15347 PPIH-202ENST00000372549 327 ntTSL 3 BASIC12.65□□□□□ -0.38
HMGB3O15347 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
HMGB3O15347 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
HMGB3O15347 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
HMGB3O15347 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC12.65□□□□□ -0.38
HMGB3O15347 DAP-202ENST00000432074 1048 ntTSL 2 BASIC12.65□□□□□ -0.38
HMGB3O15347 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
HMGB3O15347 LINC00265-3P-201ENST00000447588 903 ntBASIC12.65□□□□□ -0.38
HMGB3O15347 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC12.65□□□□□ -0.38
HMGB3O15347 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC12.65□□□□□ -0.38
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms