Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 CADM1-221ENST00000612235 1042 ntTSL 5 BASIC15.46■□□□□ 0.07
TTC28Q96AY4 MIR6746-201ENST00000620971 63 ntBASIC15.46■□□□□ 0.07
TTC28Q96AY4 PRKAB1-210ENST00000630317 258 ntTSL 2 BASIC15.46■□□□□ 0.07
TTC28Q96AY4 AC110057.1-201ENST00000636031 898 ntBASIC15.46■□□□□ 0.07
TTC28Q96AY4 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
TTC28Q96AY4 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
TTC28Q96AY4 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
TTC28Q96AY4 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
TTC28Q96AY4 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
TTC28Q96AY4 GPD1-205ENST00000548814 1591 ntTSL 2 BASIC15.46■□□□□ 0.07
TTC28Q96AY4 AL138688.1-201ENST00000624851 1594 ntBASIC15.46■□□□□ 0.07
TTC28Q96AY4 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
TTC28Q96AY4 ELP5-203ENST00000396627 1389 ntAPPRIS P2 TSL 1 (best) BASIC15.46■□□□□ 0.07
TTC28Q96AY4 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
TTC28Q96AY4 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC15.46■□□□□ 0.07
TTC28Q96AY4 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC15.46■□□□□ 0.07
TTC28Q96AY4 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC15.46■□□□□ 0.07
TTC28Q96AY4 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
TTC28Q96AY4 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC15.46■□□□□ 0.07
TTC28Q96AY4 AC090164.3-201ENST00000610780 2143 ntBASIC15.46■□□□□ 0.07
TTC28Q96AY4 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC15.46■□□□□ 0.07
TTC28Q96AY4 CHTF8-202ENST00000398235 1073 ntAPPRIS P1 TSL 2 BASIC15.46■□□□□ 0.07
TTC28Q96AY4 AL807761.2-201ENST00000422849 729 ntBASIC15.46■□□□□ 0.07
TTC28Q96AY4 LAMA4-208ENST00000431543 1080 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
TTC28Q96AY4 AC117945.1-201ENST00000451375 463 ntTSL 3 BASIC15.46■□□□□ 0.07
TTC28Q96AY4 AC135178.1-201ENST00000458568 537 ntTSL 3 BASIC15.46■□□□□ 0.07
TTC28Q96AY4 FRMD4A-204ENST00000475141 1233 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
TTC28Q96AY4 RPS23-204ENST00000507980 836 ntTSL 2 BASIC15.46■□□□□ 0.07
TTC28Q96AY4 HNRNPA1P36-201ENST00000521313 955 ntBASIC15.46■□□□□ 0.07
TTC28Q96AY4 IKBKB-223ENST00000522147 954 ntTSL 5 BASIC15.46■□□□□ 0.07
TTC28Q96AY4 CD63-214ENST00000552692 949 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
TTC28Q96AY4 AP005264.3-201ENST00000592370 485 ntTSL 5 BASIC15.46■□□□□ 0.07
TTC28Q96AY4 MCEMP1-202ENST00000597445 763 ntAPPRIS ALT2 TSL 3 BASIC15.46■□□□□ 0.07
TTC28Q96AY4 AC006547.3-201ENST00000600090 583 ntTSL 3 BASIC15.46■□□□□ 0.07
TTC28Q96AY4 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
TTC28Q96AY4 AP000593.2-201ENST00000542775 1433 ntBASIC15.46■□□□□ 0.07
TTC28Q96AY4 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
TTC28Q96AY4 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
TTC28Q96AY4 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
TTC28Q96AY4 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
TTC28Q96AY4 ACTL7A-201ENST00000333999 1494 ntAPPRIS P1 BASIC15.46■□□□□ 0.06
TTC28Q96AY4 KRT18P9-201ENST00000604826 1300 ntBASIC15.46■□□□□ 0.06
TTC28Q96AY4 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC15.46■□□□□ 0.06
TTC28Q96AY4 UPK1A-201ENST00000222275 1223 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
TTC28Q96AY4 BGLAP-201ENST00000368272 732 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
TTC28Q96AY4 UPK1A-202ENST00000379013 1016 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
TTC28Q96AY4 ETV2-201ENST00000379023 926 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
TTC28Q96AY4 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC15.45■□□□□ 0.06
TTC28Q96AY4 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC15.45■□□□□ 0.06
TTC28Q96AY4 AC097059.1-201ENST00000413103 885 ntTSL 5 BASIC15.45■□□□□ 0.06
TTC28Q96AY4 AC002127.2-201ENST00000444032 792 ntTSL 3 BASIC15.45■□□□□ 0.06
TTC28Q96AY4 AC104590.1-201ENST00000560813 648 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
TTC28Q96AY4 KRT17P4-206ENST00000584151 719 ntTSL 4 BASIC15.45■□□□□ 0.06
TTC28Q96AY4 NDUFB6-203ENST00000379847 1366 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
TTC28Q96AY4 MAGEB2-201ENST00000378988 1610 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
TTC28Q96AY4 FMR1-215ENST00000616382 1648 ntTSL 5 BASIC15.45■□□□□ 0.06
TTC28Q96AY4 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
TTC28Q96AY4 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC15.45■□□□□ 0.06
TTC28Q96AY4 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
TTC28Q96AY4 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
TTC28Q96AY4 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC15.45■□□□□ 0.06
TTC28Q96AY4 LINC01229-201ENST00000561510 1494 ntTSL 5 BASIC15.45■□□□□ 0.06
TTC28Q96AY4 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
TTC28Q96AY4 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC15.45■□□□□ 0.06
TTC28Q96AY4 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
TTC28Q96AY4 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC15.45■□□□□ 0.06
TTC28Q96AY4 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
TTC28Q96AY4 AQP7-202ENST00000377425 1068 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
TTC28Q96AY4 NME4-203ENST00000397722 1232 ntTSL 2 BASIC15.45■□□□□ 0.06
TTC28Q96AY4 GSTP1-201ENST00000398603 700 ntTSL 3 BASIC15.45■□□□□ 0.06
TTC28Q96AY4 AZGP1P1-202ENST00000425474 1181 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
TTC28Q96AY4 AL359458.1-201ENST00000430821 400 ntTSL 3 BASIC15.45■□□□□ 0.06
TTC28Q96AY4 KRT8P30-201ENST00000432100 650 ntBASIC15.45■□□□□ 0.06
TTC28Q96AY4 AL080250.1-201ENST00000438676 445 ntTSL 5 BASIC15.45■□□□□ 0.06
TTC28Q96AY4 AC092295.1-201ENST00000446262 434 ntTSL 3 BASIC15.45■□□□□ 0.06
TTC28Q96AY4 PGAP2-212ENST00000464906 1259 ntTSL 2 BASIC15.45■□□□□ 0.06
TTC28Q96AY4 TREHP1-201ENST00000531328 465 ntBASIC15.45■□□□□ 0.06
TTC28Q96AY4 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
TTC28Q96AY4 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
TTC28Q96AY4 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
TTC28Q96AY4 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
TTC28Q96AY4 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
TTC28Q96AY4 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC15.45■□□□□ 0.06
TTC28Q96AY4 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC15.45■□□□□ 0.06
TTC28Q96AY4 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC15.45■□□□□ 0.06
TTC28Q96AY4 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC15.45■□□□□ 0.06
TTC28Q96AY4 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC15.44■□□□□ 0.06
TTC28Q96AY4 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC15.44■□□□□ 0.06
TTC28Q96AY4 MRPS11-202ENST00000353598 766 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
TTC28Q96AY4 RN7SKP175-201ENST00000408472 289 ntBASIC15.44■□□□□ 0.06
TTC28Q96AY4 AL357833.1-201ENST00000413993 832 ntTSL 3 BASIC15.44■□□□□ 0.06
TTC28Q96AY4 TXNL4B-203ENST00000426362 965 ntAPPRIS P1 TSL 2 BASIC15.44■□□□□ 0.06
TTC28Q96AY4 DUTP3-201ENST00000450025 415 ntBASIC15.44■□□□□ 0.06
TTC28Q96AY4 RN7SL494P-201ENST00000461517 304 ntBASIC15.44■□□□□ 0.06
TTC28Q96AY4 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC15.44■□□□□ 0.06
TTC28Q96AY4 AC097359.3-201ENST00000603982 1210 ntBASIC15.44■□□□□ 0.06
TTC28Q96AY4 SHC1P1-201ENST00000425230 1745 ntBASIC15.44■□□□□ 0.06
TTC28Q96AY4 HLF-202ENST00000430986 1385 ntTSL 2 BASIC15.44■□□□□ 0.06
TTC28Q96AY4 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC15.44■□□□□ 0.06
TTC28Q96AY4 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 63.3 ms