RNA–Protein interactions for RNA: ENST00000445220.5

SHANK3-203, Transcript of SH3 and multiple ankyrin repeat domains 3, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHANK3, Length 5,175 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3-203ENST00000445220 DCAF8L2P0C7V8 631 aa31.33■■■□□ 2.61
SHANK3-203ENST00000445220 NISCHQ9Y2I1 1504 aa30.94■■■□□ 2.54
SHANK3-203ENST00000445220 PELP1Q8IZL8 1130 aaKnown RBP30.09■■■□□ 2.41
SHANK3-203ENST00000445220 SUPT5HO00267 1087 aaKnown RBP29.93■■■□□ 2.38
SHANK3-203ENST00000445220 SHROOM4Q9ULL8 1493 aa29.43■■■□□ 2.3
SHANK3-203ENST00000445220 MYT1Q01538 1121 aa29.33■■■□□ 2.29
SHANK3-203ENST00000445220 CENPBP07199 599 aaPredicted RBP29.01■■■□□ 2.23
SHANK3-203ENST00000445220 PCGF6Q9BYE7 350 aa28.95■■■□□ 2.22
SHANK3-203ENST00000445220 EHMT2Q96KQ7 1210 aa28.83■■■□□ 2.21
SHANK3-203ENST00000445220 ERICH6Q7L0X2 663 aa28.79■■■□□ 2.2
SHANK3-203ENST00000445220 ZEB1P37275 1124 aaPredicted RBP28.76■■■□□ 2.19
SHANK3-203ENST00000445220 CCER1Q8TC90 406 aaPredicted RBP28.64■■■□□ 2.18
SHANK3-203ENST00000445220 APLP2Q06481 763 aa28.54■■■□□ 2.16
SHANK3-203ENST00000445220 FAM9AQ8IZU1 332 aaPredicted RBP28.16■■■□□ 2.1
SHANK3-203ENST00000445220 TTBK1Q5TCY1 1321 aaPredicted RBP28.08■■■□□ 2.08
SHANK3-203ENST00000445220 NEFLP07196 543 aa28.07■■■□□ 2.08
SHANK3-203ENST00000445220 YTHDC1Q96MU7 727 aaKnown RBP27.98■■■□□ 2.07
SHANK3-203ENST00000445220 HRCP23327 699 aa27.95■■■□□ 2.06
SHANK3-203ENST00000445220 TRIM41Q8WV44 630 aa27.9■■■□□ 2.06
SHANK3-203ENST00000445220 ABCC9O60706 1549 aa27.63■■■□□ 2.01
SHANK3-203ENST00000445220 TRIM26Q12899 539 aaPredicted RBP27.62■■■□□ 2.01
SHANK3-203ENST00000445220 UBTFP17480 764 aaKnown RBP27.46■■□□□ 1.99
SHANK3-203ENST00000445220 RANGAP1P46060 587 aaPredicted RBP27.42■■□□□ 1.98
SHANK3-203ENST00000445220 ATP1B4Q9UN42 357 aaPredicted RBP27.26■■□□□ 1.95
SHANK3-203ENST00000445220 DAXXQ9UER7 740 aaPredicted RBP27.23■■□□□ 1.95
SHANK3-203ENST00000445220 PPARGC1BQ86YN6 1023 aaKnown RBP27.19■■□□□ 1.94
SHANK3-203ENST00000445220 PABPN1Q86U42 306 aaKnown RBP eCLIP27.08■■□□□ 1.93
SHANK3-203ENST00000445220 RTL5Q5HYW3 569 aaPredicted RBP27.02■■□□□ 1.92
SHANK3-203ENST00000445220 DIEXFQ68CQ4 756 aaKnown RBP26.96■■□□□ 1.91
SHANK3-203ENST00000445220 CHIC1Q5VXU3 224 aa26.86■■□□□ 1.89
SHANK3-203ENST00000445220 GTF3C3Q9Y5Q9 886 aa26.84■■□□□ 1.89
SHANK3-203ENST00000445220 LOC105371045A0A1W2PR82 267 aa26.75■■□□□ 1.87
SHANK3-203ENST00000445220 ZNF316A6NFI3 1004 aaPredicted RBP26.61■■□□□ 1.85
SHANK3-203ENST00000445220 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP26.61■■□□□ 1.85
SHANK3-203ENST00000445220 HNRNPUL2Q1KMD3 747 aaKnown RBP26.59■■□□□ 1.85
SHANK3-203ENST00000445220 ITGAEP38570 1179 aa26.49■■□□□ 1.83
SHANK3-203ENST00000445220 ACIN1Q9UKV3 1341 aaKnown RBP26.49■■□□□ 1.83
SHANK3-203ENST00000445220 POLR3GLQ9BT43 218 aa26.48■■□□□ 1.83
SHANK3-203ENST00000445220 BCANQ96GW7 911 aa26.42■■□□□ 1.82
SHANK3-203ENST00000445220 CDK11AQ9UQ88 783 aaPredicted RBP26.39■■□□□ 1.82
SHANK3-203ENST00000445220 CLSPNQ9HAW4 1339 aa26.33■■□□□ 1.81
SHANK3-203ENST00000445220 CNGB1Q14028 1251 aaPredicted RBP26.25■■□□□ 1.79
SHANK3-203ENST00000445220 MYT1LQ9UL68 1186 aa26.16■■□□□ 1.78
SHANK3-203ENST00000445220 ANP32CO43423 234 aa26.06■■□□□ 1.76
SHANK3-203ENST00000445220 ANP32AP39687 249 aaKnown RBP25.98■■□□□ 1.75
SHANK3-203ENST00000445220 EIF5BO60841 1220 aaKnown RBP25.97■■□□□ 1.75
SHANK3-203ENST00000445220 FBLN2P98095 1184 aa25.93■■□□□ 1.74
SHANK3-203ENST00000445220 FAM50AQ14320 339 aaKnown RBP25.88■■□□□ 1.73
SHANK3-203ENST00000445220 GLIPR1L2Q4G1C9 344 aa25.84■■□□□ 1.73
SHANK3-203ENST00000445220 NEUROD1Q13562 356 aa25.82■■□□□ 1.72
SHANK3-203ENST00000445220 SCAF1Q9H7N4 1312 aaKnown RBP25.75■■□□□ 1.71
SHANK3-203ENST00000445220 FKBP8Q14318 412 aa25.71■■□□□ 1.71
SHANK3-203ENST00000445220 TRIM52Q96A61 297 aa25.71■■□□□ 1.71
SHANK3-203ENST00000445220 SLC4A1APQ9BWU0 796 aaKnown RBP25.66■■□□□ 1.7
SHANK3-203ENST00000445220 ZCCHC6Q5VYS8 1495 aaKnown RBP25.66■■□□□ 1.7
SHANK3-203ENST00000445220 CSRNP3Q8WYN3 585 aa25.65■■□□□ 1.7
SHANK3-203ENST00000445220 NPM2Q86SE8 214 aaKnown RBP25.63■■□□□ 1.69
SHANK3-203ENST00000445220 ZBTB47Q9UFB7 747 aaPredicted RBP25.54■■□□□ 1.68
SHANK3-203ENST00000445220 RB1CC1Q8TDY2 1594 aa25.54■■□□□ 1.68
SHANK3-203ENST00000445220 ANP32BQ92688 251 aaKnown RBP25.5■■□□□ 1.67
SHANK3-203ENST00000445220 SCRIBQ14160 1630 aa25.49■■□□□ 1.67
SHANK3-203ENST00000445220 CANXP27824 592 aaKnown RBP25.46■■□□□ 1.67
SHANK3-203ENST00000445220 NBR1Q14596 966 aa25.43■■□□□ 1.66
SHANK3-203ENST00000445220 CCDC180Q9P1Z9 1646 aa25.42■■□□□ 1.66
SHANK3-203ENST00000445220 DCAF1Q9Y4B6 1507 aa25.38■■□□□ 1.65
SHANK3-203ENST00000445220 ANP32EQ9BTT0 268 aa25.37■■□□□ 1.65
SHANK3-203ENST00000445220 ZNF326Q5BKZ1 582 aaKnown RBP25.36■■□□□ 1.65
SHANK3-203ENST00000445220 HNRNPUQ00839 825 aaKnown RBP eCLIP25.31■■□□□ 1.64
SHANK3-203ENST00000445220 P3H3Q8IVL6 736 aa25.25■■□□□ 1.63
SHANK3-203ENST00000445220 NPM1P06748 294 aaKnown RBP eCLIP25.24■■□□□ 1.63
SHANK3-203ENST00000445220 UPF2Q9HAU5 1272 aaKnown RBP25.23■■□□□ 1.63
SHANK3-203ENST00000445220 CCDC136Q96JN2 1154 aa25.2■■□□□ 1.62
SHANK3-203ENST00000445220 HSP90AA1P07900 732 aaKnown RBP25.18■■□□□ 1.62
SHANK3-203ENST00000445220 DDX10Q13206 875 aaKnown RBP25.15■■□□□ 1.62
SHANK3-203ENST00000445220 MIER1Q8N108 512 aa25.14■■□□□ 1.62
SHANK3-203ENST00000445220 BCL11AQ9H165 835 aa25.12■■□□□ 1.61
SHANK3-203ENST00000445220 ERCC6Q03468 1493 aa25.11■■□□□ 1.61
SHANK3-203ENST00000445220 FAM9BQ8IZU0 186 aa25.07■■□□□ 1.6
SHANK3-203ENST00000445220 NACADO15069 1562 aa25.04■■□□□ 1.6
SHANK3-203ENST00000445220 NEFMP07197 916 aa25.02■■□□□ 1.6
SHANK3-203ENST00000445220 ARID3CA6NKF2 412 aa25.02■■□□□ 1.6
SHANK3-203ENST00000445220 TONSLQ96HA7 1378 aa25.01■■□□□ 1.59
SHANK3-203ENST00000445220 ZNF777Q9ULD5 760 aaPredicted RBP25■■□□□ 1.59
SHANK3-203ENST00000445220 ARXQ96QS3 562 aa24.99■■□□□ 1.59
SHANK3-203ENST00000445220 DDRGK1Q96HY6 314 aa24.92■■□□□ 1.58
SHANK3-203ENST00000445220 IRX6P78412 446 aaPredicted RBP24.9■■□□□ 1.58
SHANK3-203ENST00000445220 GOLGA6L2Q8N9W4 650 aaPredicted RBP24.89■■□□□ 1.58
SHANK3-203ENST00000445220 CHMP7Q8WUX9 453 aaPredicted RBP24.88■■□□□ 1.57
SHANK3-203ENST00000445220 TRHP20396 242 aaPredicted RBP24.87■■□□□ 1.57
SHANK3-203ENST00000445220 EEA1Q15075 1411 aa24.86■■□□□ 1.57
SHANK3-203ENST00000445220 ERICH6BQ5W0A0 696 aa24.85■■□□□ 1.57
SHANK3-203ENST00000445220 MRS2Q9HD23 443 aa24.83■■□□□ 1.57
SHANK3-203ENST00000445220 TRIM44Q96DX7 344 aaPredicted RBP24.82■■□□□ 1.56
SHANK3-203ENST00000445220 TMC1Q8TDI8 760 aa24.82■■□□□ 1.56
SHANK3-203ENST00000445220 ESF1Q9H501 851 aaKnown RBP24.82■■□□□ 1.56
SHANK3-203ENST00000445220 TNNT2P45379 298 aaPredicted RBP24.8■■□□□ 1.56
SHANK3-203ENST00000445220 PPM1GO15355 546 aaPredicted RBP24.79■■□□□ 1.56
SHANK3-203ENST00000445220 RSF1Q96T23 1441 aaPredicted RBP24.79■■□□□ 1.56
SHANK3-203ENST00000445220 SALL2Q9Y467 1007 aaPredicted RBP24.78■■□□□ 1.56
SHANK3-203ENST00000445220 CLIP1P30622 1438 aa24.78■■□□□ 1.56
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms