Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 ARAF-203ENST00000377045 2458 ntAPPRIS P3 TSL 1 (best) BASIC12.96□□□□□ -0.333e-7■□□□□ 10.3
YBX3P16989 INTS11-222ENST00000497304 932 ntTSL 1 (best)24.69■■□□□ 1.545e-10■□□□□ 10.3
YBX3P16989 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC21.22■□□□□ 0.991e-9■□□□□ 10.3
YBX3P16989 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC20.18■□□□□ 0.821e-9■□□□□ 10.3
YBX3P16989 INTS11-214ENST00000470030 2369 ntTSL 515.97■□□□□ 0.155e-10■□□□□ 10.3
YBX3P16989 INTS11-216ENST00000478641 3079 ntTSL 215.43■□□□□ 0.065e-10■□□□□ 10.3
YBX3P16989 INTS11-212ENST00000462432 2863 ntTSL 1 (best)11.9□□□□□ -0.55e-10■□□□□ 10.3
YBX3P16989 ARHGAP11A-203ENST00000562481 620 ntTSL 37.97□□□□□ -1.131e-9■□□□□ 10.3
YBX3P16989 BCKDHA-204ENST00000538423 816 ntTSL 525.77■■□□□ 1.726e-7■□□□□ 10.3
YBX3P16989 BCKDHA-205ENST00000541315 632 ntTSL 318.63■□□□□ 0.576e-7■□□□□ 10.3
YBX3P16989 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC20.79■□□□□ 0.923e-6■□□□□ 10.3
YBX3P16989 MDH2-202ENST00000424167 681 ntTSL 217.38■□□□□ 0.373e-14■□□□□ 10.3
YBX3P16989 NXT2-204ENST00000372107 937 ntTSL 3 BASIC9.06□□□□□ -0.963e-6■□□□□ 10.3
YBX3P16989 NXT2-203ENST00000372106 2562 ntAPPRIS P1 TSL 1 (best) BASIC7.82□□□□□ -1.163e-6■□□□□ 10.3
YBX3P16989 NXT2-201ENST00000218004 2692 ntTSL 1 (best) BASIC5.1□□□□□ -1.593e-6■□□□□ 10.3
YBX3P16989 TOP2A-201ENST00000423485 5758 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.783e-9■□□□□ 10.3
YBX3P16989 STT3A-216ENST00000534472 1561 ntTSL 1 (best)23.67■■□□□ 1.382e-9■□□□□ 10.3
YBX3P16989 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC34.72■■■■□ 3.151e-8■□□□□ 10.3
YBX3P16989 GRK2-207ENST00000529738 500 ntTSL 227.27■■□□□ 1.961e-8■□□□□ 10.3
YBX3P16989 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.791e-8■□□□□ 10.3
YBX3P16989 GRK2-202ENST00000416281 4493 ntTSL 214.53□□□□□ -0.081e-8■□□□□ 10.3
YBX3P16989 CCT8-211ENST00000540844 1927 ntTSL 2 BASIC15.67■□□□□ 0.13e-13■□□□□ 10.3
YBX3P16989 CCT8-201ENST00000286788 2005 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.113e-13■□□□□ 10.3
YBX3P16989 CCT8-204ENST00000470450 1872 ntTSL 1 (best)12.21□□□□□ -0.463e-13■□□□□ 10.3
YBX3P16989 CCT8-212ENST00000626972 1862 ntTSL 2 BASIC11.42□□□□□ -0.583e-13■□□□□ 10.3
YBX3P16989 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC23.86■■□□□ 1.412e-6■□□□□ 10.3
YBX3P16989 EEF1E1-204ENST00000502429 591 ntTSL 311.71□□□□□ -0.532e-6■□□□□ 10.3
YBX3P16989 EEF1E1-201ENST00000379715 1077 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.272e-6■□□□□ 10.3
YBX3P16989 EEF1E1-BLOC1S5-201ENST00000397456 768 ntAPPRIS P1 TSL 3 BASIC5.76□□□□□ -1.492e-6■□□□□ 10.3
YBX3P16989 CA1-213ENST00000521679 606 ntTSL 36.9□□□□□ -1.33e-15■□□□□ 10.3
YBX3P16989 HDAC3-208ENST00000476739 422 ntTSL 312.52□□□□□ -0.411e-7■□□□□ 10.3
YBX3P16989 HDAC3-212ENST00000492407 782 ntTSL 512.5□□□□□ -0.411e-7■□□□□ 10.3
YBX3P16989 HDAC3-202ENST00000459727 524 ntTSL 59.04□□□□□ -0.961e-7■□□□□ 10.3
YBX3P16989 HSPA8-222ENST00000534319 1884 ntTSL 2 BASIC14.5□□□□□ -0.097e-15■□□□□ 10.3
YBX3P16989 HSPA8-215ENST00000532091 2301 ntTSL 511.17□□□□□ -0.627e-15■□□□□ 10.3
YBX3P16989 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC20.27■□□□□ 0.842e-10■□□□□ 10.3
YBX3P16989 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC20.09■□□□□ 0.812e-10■□□□□ 10.3
YBX3P16989 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.692e-10■□□□□ 10.3
YBX3P16989 TBP-203ENST00000421512 935 ntTSL 1 (best)17.07■□□□□ 0.322e-10■□□□□ 10.3
YBX3P16989 TBP-201ENST00000230354 1861 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.082e-10■□□□□ 10.3
YBX3P16989 TBP-208ENST00000636632 1955 ntTSL 512.04□□□□□ -0.482e-10■□□□□ 10.3
YBX3P16989 SDHD-208ENST00000534010 460 ntTSL 214.46□□□□□ -0.093e-8■□□□□ 10.3
YBX3P16989 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC24.76■■□□□ 1.551e-8■□□□□ 10.3
YBX3P16989 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC20.79■□□□□ 0.921e-8■□□□□ 10.3
YBX3P16989 SDHA-206ENST00000505555 2230 ntTSL 220.59■□□□□ 0.891e-8■□□□□ 10.3
YBX3P16989 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.781e-8■□□□□ 10.3
YBX3P16989 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC19.28■□□□□ 0.681e-8■□□□□ 10.3
YBX3P16989 SDHA-216ENST00000514027 2209 ntTSL 212.89□□□□□ -0.351e-8■□□□□ 10.3
YBX3P16989 EIF4A1-206ENST00000577929 696 ntTSL 225.91■■□□□ 1.746e-10■□□□□ 10.3
YBX3P16989 EIF4A1-208ENST00000578476 573 ntTSL 220.84■□□□□ 0.936e-10■□□□□ 10.3
YBX3P16989 EIF4A1-214ENST00000580461 909 ntTSL 217.39■□□□□ 0.376e-10■□□□□ 10.3
YBX3P16989 EIF4A1-226ENST00000582848 591 ntTSL 316.25■□□□□ 0.196e-10■□□□□ 10.3
YBX3P16989 EIF4A1-205ENST00000577738 531 ntTSL 216.25■□□□□ 0.196e-10■□□□□ 10.3
YBX3P16989 EIF4A1-213ENST00000579139 568 ntTSL 415.04■□□□□ -06e-10■□□□□ 10.3
YBX3P16989 EIF4A1-223ENST00000582169 552 ntTSL 413.42□□□□□ -0.266e-10■□□□□ 10.3
YBX3P16989 EIF4A1-232ENST00000584712 782 ntTSL 211.43□□□□□ -0.586e-10■□□□□ 10.3
YBX3P16989 EIF4A1-234ENST00000584798 1440 nt9.41□□□□□ -0.96e-10■□□□□ 10.3
YBX3P16989 EIF4A1-230ENST00000583899 665 ntTSL 38.32□□□□□ -1.086e-10■□□□□ 10.3
YBX3P16989 EIF4A1-224ENST00000582213 560 ntTSL 46.15□□□□□ -1.426e-10■□□□□ 10.3
YBX3P16989 CHPT1-210ENST00000552351 1524 ntTSL 234.27■■■■□ 3.083e-11■□□□□ 10.3
YBX3P16989 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC32.89■■■□□ 2.863e-11■□□□□ 10.3
YBX3P16989 CHPT1-204ENST00000549128 1552 ntTSL 532.89■■■□□ 2.863e-11■□□□□ 10.3
YBX3P16989 FLNA-211ENST00000465144 398 ntTSL 221.79■■□□□ 1.086e-6■□□□□ 10.3
YBX3P16989 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.642e-6■□□□□ 10.3
YBX3P16989 FST-202ENST00000396947 2538 ntTSL 5 BASIC18.95■□□□□ 0.622e-6■□□□□ 10.3
YBX3P16989 TNFSF14-201ENST00000245912 4336 ntTSL 1 (best) BASIC11.4□□□□□ -0.586e-6■□□□□ 10.3
YBX3P16989 CHPT1-208ENST00000552215 4342 ntTSL 1 (best)9.48□□□□□ -0.893e-11■□□□□ 10.3
YBX3P16989 CHPT1-203ENST00000546873 624 ntTSL 39.45□□□□□ -0.93e-11■□□□□ 10.3
YBX3P16989 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.656e-35■□□□□ 10.3
YBX3P16989 TMEM258-203ENST00000535297 395 ntTSL 218.09■□□□□ 0.496e-35■□□□□ 10.3
YBX3P16989 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC17.92■□□□□ 0.466e-35■□□□□ 10.3
YBX3P16989 TMEM258-202ENST00000535042 921 ntTSL 316.59■□□□□ 0.256e-35■□□□□ 10.3
YBX3P16989 TMEM258-208ENST00000545210 579 ntTSL 316.35■□□□□ 0.216e-35■□□□□ 10.3
YBX3P16989 TMEM258-201ENST00000257262 468 ntTSL 311.01□□□□□ -0.656e-35■□□□□ 10.3
YBX3P16989 TMEM258-206ENST00000541893 517 ntTSL 57.13□□□□□ -1.276e-35■□□□□ 10.3
YBX3P16989 ACTN4-207ENST00000495553 586 ntTSL 511.88□□□□□ -0.512e-9■□□□□ 10.3
YBX3P16989 FUS-209ENST00000566605 1787 ntTSL 1 (best)28.65■■■□□ 2.181e-8■□□□□ 10.3
YBX3P16989 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC28.53■■■□□ 2.161e-8■□□□□ 10.3
YBX3P16989 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC28.14■■■□□ 2.091e-8■□□□□ 10.3
YBX3P16989 FUS-201ENST00000254108 5119 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.131e-8■□□□□ 10.3
YBX3P16989 FUS-205ENST00000487045 952 ntTSL 214.72□□□□□ -0.051e-8■□□□□ 10.3
YBX3P16989 FUS-206ENST00000487509 4920 ntTSL 213.89□□□□□ -0.191e-8■□□□□ 10.3
YBX3P16989 TBRG4-205ENST00000471142 544 ntTSL 421.94■■□□□ 1.12e-6■□□□□ 10.3
YBX3P16989 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC19.8■□□□□ 0.762e-6■□□□□ 10.3
YBX3P16989 TBRG4-204ENST00000461363 856 ntTSL 219.74■□□□□ 0.752e-6■□□□□ 10.3
YBX3P16989 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC18.73■□□□□ 0.592e-6■□□□□ 10.3
YBX3P16989 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.462e-6■□□□□ 10.3
YBX3P16989 TBRG4-209ENST00000478532 945 ntTSL 516.83■□□□□ 0.282e-6■□□□□ 10.3
YBX3P16989 TBRG4-215ENST00000494076 2190 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.122e-6■□□□□ 10.3
YBX3P16989 TBRG4-206ENST00000475893 579 ntTSL 412.14□□□□□ -0.472e-6■□□□□ 10.3
YBX3P16989 RPL4-209ENST00000565723 408 ntTSL 313.23□□□□□ -0.291e-323■□□□□ 10.3
YBX3P16989 HK1-217ENST00000494253 2848 ntTSL 214.5□□□□□ -0.096e-10■□□□□ 10.3
YBX3P16989 USP16-204ENST00000399976 2963 ntAPPRIS P3 TSL 1 (best) BASIC9.39□□□□□ -0.912e-6■□□□□ 10.3
YBX3P16989 USP16-201ENST00000334352 3004 ntAPPRIS P3 TSL 5 BASIC8.65□□□□□ -1.022e-6■□□□□ 10.3
YBX3P16989 USP16-203ENST00000399975 2960 ntAPPRIS ALT1 TSL 1 (best) BASIC8.23□□□□□ -1.092e-6■□□□□ 10.3
YBX3P16989 USP16-205ENST00000474835 3835 ntTSL 1 (best)4.48□□□□□ -1.692e-6■□□□□ 10.3
YBX3P16989 IPO5-206ENST00000463157 493 ntTSL 411.59□□□□□ -0.551e-9■□□□□ 10.3
YBX3P16989 C8orf59-204ENST00000523245 799 ntTSL 28.46□□□□□ -1.061e-9■□□□□ 10.3
YBX3P16989 C8orf59-201ENST00000321777 325 ntTSL 1 (best) BASIC7.87□□□□□ -1.151e-9■□□□□ 10.3
YBX3P16989 FN1-225ENST00000494446 676 ntTSL 210.18□□□□□ -0.781e-57■□□□□ 10.3
Retrieved 100 of 29,075 protein–RNA pairs in 257.1 ms