RNA–Protein interactions for RNA: ENST00000399975.7

USP16-203, Transcript of ubiquitin specific peptidase 16, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene USP16, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP16-203ENST00000399975 NISCHQ9Y2I1 1504 aa16.2■□□□□ 0.18
USP16-203ENST00000399975 CCDC180Q9P1Z9 1646 aa14.36□□□□□ -0.11
USP16-203ENST00000399975 ZCCHC6Q5VYS8 1495 aaKnown RBP13.59□□□□□ -0.23
USP16-203ENST00000399975 DCAF1Q9Y4B6 1507 aa13.52□□□□□ -0.25
USP16-203ENST00000399975 ABCC9O60706 1549 aa13.51□□□□□ -0.25
USP16-203ENST00000399975 MYO15BQ96JP2 1530 aa13.47□□□□□ -0.25
USP16-203ENST00000399975 NACADO15069 1562 aa13.37□□□□□ -0.27
USP16-203ENST00000399975 RB1CC1Q8TDY2 1594 aa13.27□□□□□ -0.28
USP16-203ENST00000399975 DCAF8L2P0C7V8 631 aa13.13□□□□□ -0.31
USP16-203ENST00000399975 UNC13AQ9UPW8 1703 aa13.01□□□□□ -0.33
USP16-203ENST00000399975 SCRIBQ14160 1630 aa12.97□□□□□ -0.33
USP16-203ENST00000399975 BICRAQ9NZM4 1560 aa12.86□□□□□ -0.35
USP16-203ENST00000399975 SHROOM4Q9ULL8 1493 aa12.85□□□□□ -0.35
USP16-203ENST00000399975 PABPN1Q86U42 306 aaKnown RBP eCLIP12.62□□□□□ -0.39
USP16-203ENST00000399975 BAZ1AQ9NRL2 1556 aaPredicted RBP12.54□□□□□ -0.4
USP16-203ENST00000399975 CECR2Q9BXF3 1484 aa12.51□□□□□ -0.41
USP16-203ENST00000399975 SMARCA4P51532 1647 aa12.51□□□□□ -0.41
USP16-203ENST00000399975 EIF4G1Q04637 1599 aaKnown RBP12.47□□□□□ -0.41
USP16-203ENST00000399975 MROH2BQ7Z745 1585 aa12.45□□□□□ -0.42
USP16-203ENST00000399975 PEG3Q9GZU2 1588 aa12.45□□□□□ -0.42
USP16-203ENST00000399975 RSF1Q96T23 1441 aaPredicted RBP12.43□□□□□ -0.42
USP16-203ENST00000399975 SMARCA2P51531 1590 aa12.36□□□□□ -0.43
USP16-203ENST00000399975 WIZO95785 1651 aa12.34□□□□□ -0.43
USP16-203ENST00000399975 ATAD2BQ9ULI0 1458 aa12.33□□□□□ -0.44
USP16-203ENST00000399975 CC2D2AQ9P2K1 1620 aa12.32□□□□□ -0.44
USP16-203ENST00000399975 HMGXB3Q12766 1538 aa12.31□□□□□ -0.44
USP16-203ENST00000399975 NCAPD3P42695 1498 aa12.31□□□□□ -0.44
USP16-203ENST00000399975 TOP2AP11388 1531 aaKnown RBP12.28□□□□□ -0.44
USP16-203ENST00000399975 BAZ1BQ9UIG0 1483 aaKnown RBP12.22□□□□□ -0.45
USP16-203ENST00000399975 SUPT5HO00267 1087 aaKnown RBP12.18□□□□□ -0.46
USP16-203ENST00000399975 CCDC88BA6NC98 1476 aa12.08□□□□□ -0.48
USP16-203ENST00000399975 DNAJC5BQ9UF47 199 aa12.07□□□□□ -0.48
USP16-203ENST00000399975 PRDM2Q13029 1718 aa11.99□□□□□ -0.49
USP16-203ENST00000399975 CFTRP13569 1480 aa11.95□□□□□ -0.5
USP16-203ENST00000399975 LAMC3Q9Y6N6 1575 aa11.94□□□□□ -0.5
USP16-203ENST00000399975 CADPSQ9ULU8 1353 aa11.91□□□□□ -0.5
USP16-203ENST00000399975 NESP48681 1621 aa11.81□□□□□ -0.52
USP16-203ENST00000399975 PDS5BQ9NTI5 1447 aa11.79□□□□□ -0.52
USP16-203ENST00000399975 FANCD2Q9BXW9 1451 aa11.77□□□□□ -0.53
USP16-203ENST00000399975 KIF21AQ7Z4S6 1674 aa11.76□□□□□ -0.53
USP16-203ENST00000399975 BIVM-ERCC5R4GMW8 1640 aa11.74□□□□□ -0.53
USP16-203ENST00000399975 CEP164Q9UPV0 1460 aa11.73□□□□□ -0.53
USP16-203ENST00000399975 ABCC8Q09428 1581 aa11.71□□□□□ -0.53
USP16-203ENST00000399975 TOP2BQ02880 1626 aa11.71□□□□□ -0.54
USP16-203ENST00000399975 DNMBPQ6XZF7 1577 aa11.69□□□□□ -0.54
USP16-203ENST00000399975 WRNQ14191 1432 aaPredicted RBP eCLIP11.69□□□□□ -0.54
USP16-203ENST00000399975 SYNJ1O43426 1573 aa11.68□□□□□ -0.54
USP16-203ENST00000399975 CUX1P39880 1505 aa11.68□□□□□ -0.54
USP16-203ENST00000399975 CHIC1Q5VXU3 224 aa11.67□□□□□ -0.54
USP16-203ENST00000399975 MRC2Q9UBG0 1479 aa11.67□□□□□ -0.54
USP16-203ENST00000399975 THOC2Q8NI27 1593 aaKnown RBP11.67□□□□□ -0.54
USP16-203ENST00000399975 WDR62O43379 1518 aa11.66□□□□□ -0.54
USP16-203ENST00000399975 URB2Q14146 1524 aaKnown RBP11.65□□□□□ -0.55
USP16-203ENST00000399975 TOPBP1Q92547 1522 aa11.64□□□□□ -0.55
USP16-203ENST00000399975 ERCC6Q03468 1493 aa11.62□□□□□ -0.55
USP16-203ENST00000399975 FGD5Q6ZNL6 1462 aa11.56□□□□□ -0.56
USP16-203ENST00000399975 WDR97A6NE52 1622 aa11.56□□□□□ -0.56
USP16-203ENST00000399975 TRIM41Q8WV44 630 aa11.56□□□□□ -0.56
USP16-203ENST00000399975 POLA1P09884 1462 aaPredicted RBP11.55□□□□□ -0.56
USP16-203ENST00000399975 TARBP1Q13395 1621 aaKnown RBP11.53□□□□□ -0.56
USP16-203ENST00000399975 ABCA10Q8WWZ4 1543 aa11.52□□□□□ -0.57
USP16-203ENST00000399975 CUX2O14529 1486 aa11.51□□□□□ -0.57
USP16-203ENST00000399975 IFT140Q96RY7 1462 aa11.5□□□□□ -0.57
USP16-203ENST00000399975 EEA1Q15075 1411 aa11.5□□□□□ -0.57
USP16-203ENST00000399975 SOGA1O94964 1423 aa11.48□□□□□ -0.57
USP16-203ENST00000399975 ABCA5Q8WWZ7 1642 aa11.47□□□□□ -0.57
USP16-203ENST00000399975 RAD54L2Q9Y4B4 1467 aa11.45□□□□□ -0.58
USP16-203ENST00000399975 KIF27Q86VH2 1401 aa11.43□□□□□ -0.58
USP16-203ENST00000399975 ERICH3Q5RHP9 1530 aa11.4□□□□□ -0.58
USP16-203ENST00000399975 PBRM1Q86U86 1689 aa11.4□□□□□ -0.58
USP16-203ENST00000399975 RUSC2Q8N2Y8 1516 aa11.39□□□□□ -0.59
USP16-203ENST00000399975 EIF4G3O43432 1585 aaKnown RBP11.38□□□□□ -0.59
USP16-203ENST00000399975 CUL7Q14999 1698 aa11.38□□□□□ -0.59
USP16-203ENST00000399975 GAPVD1Q14C86 1478 aa11.37□□□□□ -0.59
USP16-203ENST00000399975 KIF21BO75037 1637 aa11.37□□□□□ -0.59
USP16-203ENST00000399975 ZNF608Q9ULD9 1512 aaPredicted RBP11.35□□□□□ -0.59
USP16-203ENST00000399975 GRIN2BQ13224 1484 aa11.34□□□□□ -0.59
USP16-203ENST00000399975 IGF1RP08069 1367 aa11.34□□□□□ -0.59
USP16-203ENST00000399975 PRXQ9BXM0 1461 aa11.34□□□□□ -0.59
USP16-203ENST00000399975 CSRNP3Q8WYN3 585 aa11.33□□□□□ -0.6
USP16-203ENST00000399975 TDRD9Q8NDG6 1382 aaKnown RBP11.32□□□□□ -0.6
USP16-203ENST00000399975 AQRO60306 1485 aaKnown RBP eCLIP11.31□□□□□ -0.64e-6■■■□□ 15.8
USP16-203ENST00000399975 ADAMTS12P58397 1594 aa11.31□□□□□ -0.6
USP16-203ENST00000399975 MAGI1Q96QZ7 1491 aaPredicted RBP11.31□□□□□ -0.6
USP16-203ENST00000399975 FHAD1B1AJZ9 1412 aa11.28□□□□□ -0.6
USP16-203ENST00000399975 RAPGEF2Q9Y4G8 1499 aa11.27□□□□□ -0.61
USP16-203ENST00000399975 CARMIL1Q5VZK9 1371 aa11.26□□□□□ -0.61
USP16-203ENST00000399975 GOLGA3Q08378 1498 aa11.26□□□□□ -0.61
USP16-203ENST00000399975 SNAPC4Q5SXM2 1469 aa11.25□□□□□ -0.61
USP16-203ENST00000399975 SYNJ2O15056 1496 aa11.24□□□□□ -0.61
USP16-203ENST00000399975 FAM9AQ8IZU1 332 aaPredicted RBP11.21□□□□□ -0.61
USP16-203ENST00000399975 CTTNBP2Q8WZ74 1663 aa11.21□□□□□ -0.62
USP16-203ENST00000399975 GRIN2AQ12879 1464 aa11.2□□□□□ -0.62
USP16-203ENST00000399975 TNIKQ9UKE5 1360 aa11.19□□□□□ -0.62
USP16-203ENST00000399975 CHD1O14646 1710 aa11.19□□□□□ -0.62
USP16-203ENST00000399975 NUP160Q12769 1436 aa11.16□□□□□ -0.62
USP16-203ENST00000399975 CEP170Q5SW79 1584 aa11.14□□□□□ -0.63
USP16-203ENST00000399975 KIAA0586Q9BVV6 1533 aa11.12□□□□□ -0.63
USP16-203ENST00000399975 LOC105371045A0A1W2PR82 267 aa11.11□□□□□ -0.63
USP16-203ENST00000399975 IQGAP2Q13576 1575 aa11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms