RNA–Protein interactions for RNA: ENST00000459727.5

HDAC3-202, Transcript of histone deacetylase 3, humanhuman

TSL 5

Gene HDAC3, Length 524 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-202ENST00000459727 NISCHQ9Y2I1 1504 aa18.56■□□□□ 0.56
HDAC3-202ENST00000459727 CCDC180Q9P1Z9 1646 aa16.02■□□□□ 0.16
HDAC3-202ENST00000459727 ZCCHC6Q5VYS8 1495 aaKnown RBP15.73■□□□□ 0.11
HDAC3-202ENST00000459727 DCAF1Q9Y4B6 1507 aa15.47■□□□□ 0.07
HDAC3-202ENST00000459727 SHROOM4Q9ULL8 1493 aa15.35■□□□□ 0.05
HDAC3-202ENST00000459727 MYO15BQ96JP2 1530 aa15.12■□□□□ 0.01
HDAC3-202ENST00000459727 SUPT5HO00267 1087 aaKnown RBP15.08■□□□□ 0
HDAC3-202ENST00000459727 DCAF8L2P0C7V8 631 aa14.99□□□□□ -0.01
HDAC3-202ENST00000459727 ABCC9O60706 1549 aa14.92□□□□□ -0.02
HDAC3-202ENST00000459727 NACADO15069 1562 aa14.79□□□□□ -0.04
HDAC3-202ENST00000459727 CHIC1Q5VXU3 224 aa14.76□□□□□ -0.05
HDAC3-202ENST00000459727 SCRIBQ14160 1630 aa14.66□□□□□ -0.06
HDAC3-202ENST00000459727 DNAJC5BQ9UF47 199 aa14.62□□□□□ -0.07
HDAC3-202ENST00000459727 RSF1Q96T23 1441 aaPredicted RBP14.58□□□□□ -0.08
HDAC3-202ENST00000459727 RB1CC1Q8TDY2 1594 aa14.55□□□□□ -0.08
HDAC3-202ENST00000459727 BAZ1AQ9NRL2 1556 aaPredicted RBP14.35□□□□□ -0.11
HDAC3-202ENST00000459727 MROH2BQ7Z745 1585 aa14.29□□□□□ -0.12
HDAC3-202ENST00000459727 HRCP23327 699 aa14.27□□□□□ -0.13
HDAC3-202ENST00000459727 CECR2Q9BXF3 1484 aa14.26□□□□□ -0.13
HDAC3-202ENST00000459727 TRIM41Q8WV44 630 aa14.24□□□□□ -0.13
HDAC3-202ENST00000459727 WIZO95785 1651 aa14.18□□□□□ -0.14
HDAC3-202ENST00000459727 TOP2AP11388 1531 aaKnown RBP14.18□□□□□ -0.14
HDAC3-202ENST00000459727 SMARCA4P51532 1647 aa14.15□□□□□ -0.14
HDAC3-202ENST00000459727 TRIM26Q12899 539 aaPredicted RBP14.13□□□□□ -0.15
HDAC3-202ENST00000459727 PCGF6Q9BYE7 350 aa14.13□□□□□ -0.15
HDAC3-202ENST00000459727 LOC105371045A0A1W2PR82 267 aa14.11□□□□□ -0.15
HDAC3-202ENST00000459727 EIF4G1Q04637 1599 aaKnown RBP14.11□□□□□ -0.15
HDAC3-202ENST00000459727 UNC13AQ9UPW8 1703 aa14.06□□□□□ -0.16
HDAC3-202ENST00000459727 PEG3Q9GZU2 1588 aa14.01□□□□□ -0.17
HDAC3-202ENST00000459727 ZEB1P37275 1124 aaPredicted RBP14□□□□□ -0.17
HDAC3-202ENST00000459727 SMARCA2P51531 1590 aa14□□□□□ -0.17
HDAC3-202ENST00000459727 EEA1Q15075 1411 aa13.98□□□□□ -0.17
HDAC3-202ENST00000459727 CCDC88BA6NC98 1476 aa13.95□□□□□ -0.18
HDAC3-202ENST00000459727 BICRAQ9NZM4 1560 aa13.93□□□□□ -0.18
HDAC3-202ENST00000459727 FAM9AQ8IZU1 332 aaPredicted RBP13.85□□□□□ -0.19
HDAC3-202ENST00000459727 WRNQ14191 1432 aaPredicted RBP eCLIP13.81□□□□□ -0.2
HDAC3-202ENST00000459727 DNAJC5Q9H3Z4 198 aa13.78□□□□□ -0.2
HDAC3-202ENST00000459727 ABCC8Q09428 1581 aa13.78□□□□□ -0.2
HDAC3-202ENST00000459727 TNIKQ9UKE5 1360 aa13.77□□□□□ -0.21
HDAC3-202ENST00000459727 ATAD2BQ9ULI0 1458 aa13.77□□□□□ -0.21
HDAC3-202ENST00000459727 BAZ1BQ9UIG0 1483 aaKnown RBP13.76□□□□□ -0.21
HDAC3-202ENST00000459727 PABPN1Q86U42 306 aaKnown RBP eCLIP13.76□□□□□ -0.21
HDAC3-202ENST00000459727 GOLGA3Q08378 1498 aa13.73□□□□□ -0.21
HDAC3-202ENST00000459727 CSRNP3Q8WYN3 585 aa13.69□□□□□ -0.22
HDAC3-202ENST00000459727 CEP162Q5TB80 1403 aa13.69□□□□□ -0.22
HDAC3-202ENST00000459727 HMGXB3Q12766 1538 aa13.68□□□□□ -0.22
HDAC3-202ENST00000459727 KIF21BO75037 1637 aa13.68□□□□□ -0.22
HDAC3-202ENST00000459727 CEP164Q9UPV0 1460 aa13.67□□□□□ -0.22
HDAC3-202ENST00000459727 SOGA1O94964 1423 aa13.64□□□□□ -0.23
HDAC3-202ENST00000459727 PPARGC1BQ86YN6 1023 aaKnown RBP13.63□□□□□ -0.23
HDAC3-202ENST00000459727 NCAPD3P42695 1498 aa13.61□□□□□ -0.23
HDAC3-202ENST00000459727 SYNJ1O43426 1573 aa13.59□□□□□ -0.23
HDAC3-202ENST00000459727 TOP2BQ02880 1626 aa13.57□□□□□ -0.24
HDAC3-202ENST00000459727 BIVM-ERCC5R4GMW8 1640 aa13.56□□□□□ -0.24
HDAC3-202ENST00000459727 UBTFP17480 764 aaKnown RBP13.54□□□□□ -0.24
HDAC3-202ENST00000459727 EHMT2Q96KQ7 1210 aa13.54□□□□□ -0.24
HDAC3-202ENST00000459727 CC2D2AQ9P2K1 1620 aa13.53□□□□□ -0.24
HDAC3-202ENST00000459727 ERICH3Q5RHP9 1530 aa13.51□□□□□ -0.25
HDAC3-202ENST00000459727 RUSC2Q8N2Y8 1516 aa13.49□□□□□ -0.25
HDAC3-202ENST00000459727 CLIP1P30622 1438 aa13.48□□□□□ -0.25
HDAC3-202ENST00000459727 VPS8Q8N3P4 1428 aa13.47□□□□□ -0.25
HDAC3-202ENST00000459727 CCER1Q8TC90 406 aaPredicted RBP13.45□□□□□ -0.26
HDAC3-202ENST00000459727 CFTRP13569 1480 aa13.44□□□□□ -0.26
HDAC3-202ENST00000459727 PRDM2Q13029 1718 aa13.42□□□□□ -0.26
HDAC3-202ENST00000459727 KIF27Q86VH2 1401 aa13.4□□□□□ -0.26
HDAC3-202ENST00000459727 APLP2Q06481 763 aa13.4□□□□□ -0.26
HDAC3-202ENST00000459727 PRXQ9BXM0 1461 aa13.4□□□□□ -0.26
HDAC3-202ENST00000459727 RAPGEF2Q9Y4G8 1499 aa13.38□□□□□ -0.27
HDAC3-202ENST00000459727 CUX1P39880 1505 aa13.34□□□□□ -0.27
HDAC3-202ENST00000459727 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.31□□□□□ -0.28
HDAC3-202ENST00000459727 CADPSQ9ULU8 1353 aa13.27□□□□□ -0.29
HDAC3-202ENST00000459727 CLSPNQ9HAW4 1339 aa13.26□□□□□ -0.29
HDAC3-202ENST00000459727 ARAP1Q96P48 1450 aa13.23□□□□□ -0.29
HDAC3-202ENST00000459727 MAP3K1Q13233 1512 aa13.22□□□□□ -0.29
HDAC3-202ENST00000459727 CUX2O14529 1486 aa13.18□□□□□ -0.3
HDAC3-202ENST00000459727 TTBK1Q5TCY1 1321 aaPredicted RBP13.16□□□□□ -0.3
HDAC3-202ENST00000459727 RRBP1Q9P2E9 1410 aaKnown RBP13.15□□□□□ -0.3
HDAC3-202ENST00000459727 DIEXFQ68CQ4 756 aaKnown RBP13.14□□□□□ -0.31
HDAC3-202ENST00000459727 FGD5Q6ZNL6 1462 aa13.14□□□□□ -0.31
HDAC3-202ENST00000459727 DNMBPQ6XZF7 1577 aa13.14□□□□□ -0.31
HDAC3-202ENST00000459727 ARHGAP35Q9NRY4 1499 aa13.13□□□□□ -0.31
HDAC3-202ENST00000459727 ZNF316A6NFI3 1004 aaPredicted RBP13.13□□□□□ -0.31
HDAC3-202ENST00000459727 CENPBP07199 599 aaPredicted RBP13.13□□□□□ -0.31
HDAC3-202ENST00000459727 FHAD1B1AJZ9 1412 aa13.13□□□□□ -0.31
HDAC3-202ENST00000459727 FANCD2Q9BXW9 1451 aa13.12□□□□□ -0.31
HDAC3-202ENST00000459727 IGF1RP08069 1367 aa13.12□□□□□ -0.31
HDAC3-202ENST00000459727 CARMIL1Q5VZK9 1371 aa13.1□□□□□ -0.31
HDAC3-202ENST00000459727 CUL7Q14999 1698 aa13.1□□□□□ -0.31
HDAC3-202ENST00000459727 EFCAB5A4FU69 1503 aa13.09□□□□□ -0.31
HDAC3-202ENST00000459727 ABCA10Q8WWZ4 1543 aa13.09□□□□□ -0.31
HDAC3-202ENST00000459727 LAMC3Q9Y6N6 1575 aa13.08□□□□□ -0.32
HDAC3-202ENST00000459727 HNRNPUL2Q1KMD3 747 aaKnown RBP13.08□□□□□ -0.32
HDAC3-202ENST00000459727 PELP1Q8IZL8 1130 aaKnown RBP13.08□□□□□ -0.32
HDAC3-202ENST00000459727 TIAM1Q13009 1591 aa13.06□□□□□ -0.32
HDAC3-202ENST00000459727 CCNB3Q8WWL7 1395 aa13.06□□□□□ -0.32
HDAC3-202ENST00000459727 AQRO60306 1485 aaKnown RBP eCLIP13.04□□□□□ -0.327e-7■■■■□ 23.5
HDAC3-202ENST00000459727 TOPBP1Q92547 1522 aa13.03□□□□□ -0.32
HDAC3-202ENST00000459727 CFAP43Q8NDM7 1665 aa13.02□□□□□ -0.33
HDAC3-202ENST00000459727 ACIN1Q9UKV3 1341 aaKnown RBP13.01□□□□□ -0.33
HDAC3-202ENST00000459727 FYCO1Q9BQS8 1478 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 189.6 ms