Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 PRDM1-203ENST00000369096 5164 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
VCPP55072 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
VCPP55072 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC16.82■□□□□ 0.28
VCPP55072 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC16.82■□□□□ 0.28
VCPP55072 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
VCPP55072 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
VCPP55072 DIDO1-201ENST00000266070 8574 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
VCPP55072 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
VCPP55072 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
VCPP55072 GBGT1-202ENST00000372038 847 ntTSL 3 BASIC16.82■□□□□ 0.28
VCPP55072 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC16.82■□□□□ 0.28
VCPP55072 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC16.82■□□□□ 0.28
VCPP55072 BOLA2P3-201ENST00000404566 256 ntBASIC16.82■□□□□ 0.28
VCPP55072 GOLGA2P4-201ENST00000441462 777 ntBASIC16.82■□□□□ 0.28
VCPP55072 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
VCPP55072 AC093904.2-201ENST00000495580 418 ntTSL 3 BASIC16.82■□□□□ 0.28
VCPP55072 AC108142.1-201ENST00000505389 286 ntTSL 3 BASIC16.82■□□□□ 0.28
VCPP55072 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
VCPP55072 AC123567.1-201ENST00000548294 1261 ntBASIC16.82■□□□□ 0.28
VCPP55072 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC16.82■□□□□ 0.28
VCPP55072 HYAL1-201ENST00000266031 2517 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
VCPP55072 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC16.82■□□□□ 0.28
VCPP55072 CCDC187-205ENST00000638797 10126 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
VCPP55072 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
VCPP55072 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
VCPP55072 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC16.82■□□□□ 0.28
VCPP55072 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC16.82■□□□□ 0.28
VCPP55072 KIAA0368-201ENST00000259335 7391 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
VCPP55072 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
VCPP55072 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC16.82■□□□□ 0.28
VCPP55072 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
VCPP55072 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
VCPP55072 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
VCPP55072 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
VCPP55072 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
VCPP55072 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
VCPP55072 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
VCPP55072 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
VCPP55072 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
VCPP55072 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
VCPP55072 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
VCPP55072 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
VCPP55072 BRWD1P1-201ENST00000401091 371 ntBASIC16.81■□□□□ 0.28
VCPP55072 AC098850.1-201ENST00000419919 790 ntBASIC16.81■□□□□ 0.28
VCPP55072 RPS24-203ENST00000435275 656 ntAPPRIS ALT1 TSL 2 BASIC16.81■□□□□ 0.28
VCPP55072 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC16.81■□□□□ 0.28
VCPP55072 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
VCPP55072 AC109479.1-201ENST00000519603 624 ntTSL 2 BASIC16.81■□□□□ 0.28
VCPP55072 IFITM3-202ENST00000526811 543 ntAPPRIS ALT1 TSL 5 BASIC16.81■□□□□ 0.28
VCPP55072 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC16.81■□□□□ 0.28
VCPP55072 RCN1-210ENST00000532942 1191 ntAPPRIS ALT2 TSL 2 BASIC16.81■□□□□ 0.28
VCPP55072 AC013451.1-201ENST00000554552 518 ntTSL 4 BASIC16.81■□□□□ 0.28
VCPP55072 AC010327.1-201ENST00000587871 975 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
VCPP55072 RPS24-214ENST00000613865 538 ntTSL 5 BASIC16.81■□□□□ 0.28
VCPP55072 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
VCPP55072 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
VCPP55072 FES-204ENST00000414248 2327 ntTSL 2 BASIC16.81■□□□□ 0.28
VCPP55072 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
VCPP55072 LINC01185-202ENST00000452343 1705 ntTSL 2 BASIC16.81■□□□□ 0.28
VCPP55072 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
VCPP55072 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC16.81■□□□□ 0.28
VCPP55072 ZMYND11-208ENST00000397962 2150 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
VCPP55072 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
VCPP55072 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
VCPP55072 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
VCPP55072 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
VCPP55072 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC16.81■□□□□ 0.28
VCPP55072 ATXN7-213ENST00000538065 6842 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
VCPP55072 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
VCPP55072 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
VCPP55072 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
VCPP55072 TMEM184A-201ENST00000297477 6276 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
VCPP55072 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
VCPP55072 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
VCPP55072 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
VCPP55072 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
VCPP55072 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC16.8■□□□□ 0.28
VCPP55072 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
VCPP55072 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
VCPP55072 ANKRD33B-201ENST00000296657 9188 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
VCPP55072 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC16.8■□□□□ 0.28
VCPP55072 ANKHD1-EIF4EBP3-203ENST00000532219 8246 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
VCPP55072 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC16.8■□□□□ 0.28
VCPP55072 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC16.8■□□□□ 0.28
VCPP55072 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
VCPP55072 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
VCPP55072 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC16.8■□□□□ 0.28
VCPP55072 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
VCPP55072 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC16.8■□□□□ 0.28
VCPP55072 STX1A-203ENST00000395155 783 ntTSL 2 BASIC16.8■□□□□ 0.28
VCPP55072 AC007731.4-201ENST00000420225 652 ntTSL 2 BASIC16.8■□□□□ 0.28
VCPP55072 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC16.8■□□□□ 0.28
VCPP55072 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC16.8■□□□□ 0.28
VCPP55072 LINC01939-201ENST00000445279 694 ntTSL 5 BASIC16.8■□□□□ 0.28
VCPP55072 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC16.8■□□□□ 0.28
VCPP55072 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC16.8■□□□□ 0.28
VCPP55072 BRF2-202ENST00000520601 1192 ntTSL 3 BASIC16.8■□□□□ 0.28
VCPP55072 AC061975.2-201ENST00000581722 295 ntBASIC16.8■□□□□ 0.28
VCPP55072 WFDC1-204ENST00000613603 549 ntBASIC16.8■□□□□ 0.28
VCPP55072 5S_rRNA.22-201ENST00000614916 106 ntBASIC16.8■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 38.5 ms