Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC21.45■■□□□ 1.024e-7■□□□□ 10.3
YBX3P16989 CCDC50-201ENST00000392455 8429 ntAPPRIS ALT1 TSL 1 (best) BASIC14.61□□□□□ -0.074e-7■□□□□ 10.3
YBX3P16989 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC16.44■□□□□ 0.225e-6■□□□□ 10.3
YBX3P16989 NCOA1-204ENST00000405141 7405 ntAPPRIS ALT2 TSL 5 BASIC9.67□□□□□ -0.865e-6■□□□□ 10.3
YBX3P16989 NCOA1-206ENST00000407230 4745 ntTSL 1 (best) BASIC5.6□□□□□ -1.515e-6■□□□□ 10.3
YBX3P16989 NCOA1-202ENST00000348332 6895 ntAPPRIS P4 TSL 1 (best) BASIC4.62□□□□□ -1.675e-6■□□□□ 10.3
YBX3P16989 NCOA1-201ENST00000288599 6952 ntAPPRIS ALT2 TSL 1 (best) BASIC4.32□□□□□ -1.725e-6■□□□□ 10.3
YBX3P16989 NCOA1-203ENST00000395856 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC4.03□□□□□ -1.765e-6■□□□□ 10.3
YBX3P16989 ARVCF-208ENST00000480792 551 ntTSL 321.85■■□□□ 1.092e-6■□□□□ 10.3
YBX3P16989 ARVCF-211ENST00000495096 2549 ntTSL 220.33■□□□□ 0.852e-6■□□□□ 10.3
YBX3P16989 ARVCF-201ENST00000263207 4041 ntAPPRIS P2 TSL 1 (best) BASIC16.56■□□□□ 0.242e-6■□□□□ 10.3
YBX3P16989 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC16.41■□□□□ 0.222e-6■□□□□ 10.3
YBX3P16989 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC16.15■□□□□ 0.182e-6■□□□□ 10.3
YBX3P16989 ARVCF-203ENST00000406259 2871 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.072e-6■□□□□ 10.3
YBX3P16989 SEC16A-207ENST00000453963 4834 ntAPPRIS ALT2 TSL 1 (best)12.21□□□□□ -0.466e-7■□□□□ 10.3
YBX3P16989 SEC16A-201ENST00000277537 3910 ntAPPRIS ALT2 TSL 1 (best)9.59□□□□□ -0.876e-7■□□□□ 10.3
YBX3P16989 TRAF7-206ENST00000569686 586 ntTSL 233.16■■■□□ 2.93e-8■□□□□ 10.3
YBX3P16989 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC31.82■■■□□ 2.683e-8■□□□□ 10.3
YBX3P16989 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC25.38■■□□□ 1.653e-8■□□□□ 10.3
YBX3P16989 TRAF7-204ENST00000567645 737 ntTSL 519.71■□□□□ 0.753e-8■□□□□ 10.3
YBX3P16989 PRDX1-206ENST00000483583 530 ntTSL 230.02■■■□□ 2.44e-17■□□□□ 10.3
YBX3P16989 QARS-245ENST00000635541 907 ntTSL 316.94■□□□□ 0.38e-10■□□□□ 10.3
YBX3P16989 ECI1-204ENST00000563029 776 ntTSL 235.22■■■■□ 3.231e-11■□□□□ 10.3
YBX3P16989 ECI1-205ENST00000563447 965 ntTSL 221.46■■□□□ 1.031e-11■□□□□ 10.3
YBX3P16989 ADIPOR1-205ENST00000495562 2109 ntTSL 210.37□□□□□ -0.751e-8■□□□□ 10.3
YBX3P16989 MBD4-207ENST00000509587 643 ntTSL 322.11■■□□□ 1.131e-7■□□□□ 10.3
YBX3P16989 MBD4-205ENST00000505883 613 ntTSL 321.34■■□□□ 1.011e-7■□□□□ 10.3
YBX3P16989 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC20.1■□□□□ 0.811e-7■□□□□ 10.3
YBX3P16989 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC18.33■□□□□ 0.521e-7■□□□□ 10.3
YBX3P16989 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.381e-7■□□□□ 10.3
YBX3P16989 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC16.94■□□□□ 0.31e-7■□□□□ 10.3
YBX3P16989 MBD4-201ENST00000249910 2470 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.161e-7■□□□□ 10.3
YBX3P16989 MBD4-208ENST00000509828 576 ntTSL 214.57□□□□□ -0.081e-7■□□□□ 10.3
YBX3P16989 RPL15-206ENST00000422218 588 ntTSL 423.35■■□□□ 1.334e-9■□□□□ 10.3
YBX3P16989 RPL15-207ENST00000434031 650 ntTSL 513.25□□□□□ -0.293e-9■□□□□ 10.3
YBX3P16989 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 16e-8■□□□□ 10.3
YBX3P16989 GSPT1-202ENST00000434724 7105 ntAPPRIS P4 TSL 1 (best) BASIC14.97□□□□□ -0.016e-8■□□□□ 10.3
YBX3P16989 GSPT1-206ENST00000563468 1962 ntAPPRIS ALT2 TSL 2 BASIC10.94□□□□□ -0.666e-8■□□□□ 10.3
YBX3P16989 GSPT1-208ENST00000565267 1864 ntTSL 510.1□□□□□ -0.796e-8■□□□□ 10.3
YBX3P16989 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC33.45■■■□□ 2.951e-15■□□□□ 10.3
YBX3P16989 RPS20-210ENST00000523936 899 ntTSL 2 BASIC26.83■■□□□ 1.891e-15■□□□□ 10.3
YBX3P16989 RPS20-208ENST00000521262 650 ntAPPRIS P1 TSL 2 BASIC15.42■□□□□ 0.061e-15■□□□□ 10.3
YBX3P16989 RPS20-207ENST00000520627 423 ntTSL 5 BASIC12.44□□□□□ -0.421e-15■□□□□ 10.3
YBX3P16989 RPS20-212ENST00000618656 627 ntTSL 3 BASIC12.37□□□□□ -0.431e-15■□□□□ 10.3
YBX3P16989 RPS20-201ENST00000009589 626 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.571e-15■□□□□ 10.3
YBX3P16989 RPS20-204ENST00000519606 424 ntTSL 3 BASIC11.5□□□□□ -0.571e-15■□□□□ 10.3
YBX3P16989 RPS20-206ENST00000520490 402 ntTSL 310.13□□□□□ -0.791e-15■□□□□ 10.3
YBX3P16989 RPS20-205ENST00000519807 1826 ntTSL 2 BASIC9.71□□□□□ -0.851e-15■□□□□ 10.3
YBX3P16989 CCT8-208ENST00000484403 808 ntTSL 310.29□□□□□ -0.762e-13■□□□□ 10.3
YBX3P16989 EIF4G1-236ENST00000484862 590 ntTSL 212.81□□□□□ -0.365e-12■□□□□ 10.3
YBX3P16989 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC28.47■■■□□ 2.153e-9■□□□□ 10.3
YBX3P16989 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.623e-9■□□□□ 10.3
YBX3P16989 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.284e-7■□□□□ 10.3
YBX3P16989 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.164e-7■□□□□ 10.3
YBX3P16989 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.724e-7■□□□□ 10.3
YBX3P16989 COG5-210ENST00000605888 576 ntAPPRIS ALT2 TSL 217.78■□□□□ 0.441e-6■□□□□ 10.3
YBX3P16989 DCTN2-210ENST00000548736 565 ntTSL 410.59□□□□□ -0.712e-6■□□□□ 10.3
YBX3P16989 DCTN2-223ENST00000551872 571 ntTSL 29.59□□□□□ -0.872e-6■□□□□ 10.3
YBX3P16989 DCTN2-222ENST00000551611 502 ntTSL 59.35□□□□□ -0.912e-6■□□□□ 10.3
YBX3P16989 PABPC4-206ENST00000437136 876 ntTSL 517.45■□□□□ 0.382e-11■□□□□ 10.3
YBX3P16989 PABPC4-209ENST00000468476 3592 ntTSL 29.51□□□□□ -0.892e-11■□□□□ 10.3
YBX3P16989 LDHB-206ENST00000470985 678 ntTSL 1 (best)11.07□□□□□ -0.643e-18■□□□□ 10.3
YBX3P16989 LDHB-209ENST00000542765 672 ntTSL 25.69□□□□□ -1.53e-18■□□□□ 10.3
YBX3P16989 PDE4A-203ENST00000380702 4781 ntAPPRIS P4 TSL 1 (best) BASIC15.77■□□□□ 0.123e-6■□□□□ 10.3
YBX3P16989 TM9SF2-201ENST00000376387 3430 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.563e-7■□□□□ 10.3
YBX3P16989 PARL-205ENST00000421484 1347 ntTSL 532.31■■■□□ 2.761e-6■□□□□ 10.3
YBX3P16989 PARL-213ENST00000639900 1545 ntTSL 531.39■■■□□ 2.611e-6■□□□□ 10.3
YBX3P16989 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC30.54■■■□□ 2.481e-6■□□□□ 10.3
YBX3P16989 PARL-206ENST00000435888 1098 ntTSL 5 BASIC30.22■■■□□ 2.431e-6■□□□□ 10.3
YBX3P16989 PARL-211ENST00000638817 1534 ntTSL 527.88■■■□□ 2.051e-6■□□□□ 10.3
YBX3P16989 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC26.16■■□□□ 1.781e-6■□□□□ 10.3
YBX3P16989 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.471e-6■□□□□ 10.3
YBX3P16989 PARL-203ENST00000417784 722 ntTSL 314.44□□□□□ -0.11e-6■□□□□ 10.3
YBX3P16989 EMC3-202ENST00000429759 751 ntTSL 3 BASIC12.59□□□□□ -0.391e-6■□□□□ 10.3
YBX3P16989 PARL-204ENST00000418450 546 ntTSL 312.42□□□□□ -0.421e-6■□□□□ 10.3
YBX3P16989 PARL-208ENST00000450375 488 ntTSL 212.01□□□□□ -0.491e-6■□□□□ 10.3
YBX3P16989 PARL-212ENST00000639100 1513 ntTSL 5 BASIC11.93□□□□□ -0.51e-6■□□□□ 10.3
YBX3P16989 PVT1-213ENST00000522414 654 ntTSL 210.96□□□□□ -0.653e-7■□□□□ 10.3
YBX3P16989 PVT1-222ENST00000613916 137 nt9.44□□□□□ -0.93e-7■□□□□ 10.3
YBX3P16989 NOP53-206ENST00000598285 265 ntTSL 221.45■■□□□ 1.021e-10■□□□□ 10.3
YBX3P16989 NOP53-202ENST00000594182 303 ntTSL 320.85■□□□□ 0.931e-10■□□□□ 10.3
YBX3P16989 WBP2-211ENST00000589642 568 ntTSL 322.44■■□□□ 1.185e-10■□□□□ 10.3
YBX3P16989 WBP2-202ENST00000416574 987 ntTSL 217.23■□□□□ 0.355e-10■□□□□ 10.3
YBX3P16989 JUP-210ENST00000585793 598 ntTSL 217.15■□□□□ 0.345e-10■□□□□ 10.3
YBX3P16989 WBP2-209ENST00000589236 747 ntTSL 217.12■□□□□ 0.335e-10■□□□□ 10.3
YBX3P16989 WBP2-206ENST00000587374 480 ntTSL 416.61■□□□□ 0.255e-10■□□□□ 10.3
YBX3P16989 WBP2-218ENST00000593002 610 ntTSL 415.59■□□□□ 0.095e-10■□□□□ 10.3
YBX3P16989 GSR-202ENST00000521479 582 ntTSL 313.61□□□□□ -0.232e-9■□□□□ 10.3
YBX3P16989 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC24.45■■□□□ 1.52e-29■□□□□ 10.3
YBX3P16989 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC23.07■■□□□ 1.282e-29■□□□□ 10.3
YBX3P16989 OAZ1-201ENST00000581150 1131 ntTSL 522.9■■□□□ 1.262e-29■□□□□ 10.3
YBX3P16989 OAZ1-203ENST00000586054 2832 nt22.57■■□□□ 1.22e-29■□□□□ 10.3
YBX3P16989 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC22.11■■□□□ 1.132e-29■□□□□ 10.3
YBX3P16989 OAZ1-210ENST00000593012 1357 ntTSL 220.68■□□□□ 0.92e-29■□□□□ 10.3
YBX3P16989 OAZ1-207ENST00000590943 1012 ntTSL 220.59■□□□□ 0.892e-29■□□□□ 10.3
YBX3P16989 OAZ1-208ENST00000592727 726 ntTSL 220.08■□□□□ 0.812e-29■□□□□ 10.3
YBX3P16989 XPO7-205ENST00000518808 1004 ntTSL 56.03□□□□□ -1.442e-8■□□□□ 10.3
YBX3P16989 CDC6-204ENST00000580824 696 ntTSL 319.53■□□□□ 0.728e-8■□□□□ 10.3
YBX3P16989 CDC6-201ENST00000209728 4810 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.348e-8■□□□□ 10.3
YBX3P16989 ARAF-201ENST00000290277 2504 ntAPPRIS ALT1 TSL 1 (best) BASIC14.15□□□□□ -0.143e-7■□□□□ 10.3
Retrieved 100 of 29,075 protein–RNA pairs in 259.2 ms