RNA–Protein interactions for RNA: ENST00000522414.1

PVT1-213, Transcript of Pvt1 oncogene, humanhuman

TSL 2

Gene PVT1, Length 654 nt, Biotype lincRNA, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PVT1-213ENST00000522414 AEBP2Q6ZN18 517 aaPredicted RBP31.73■■■□□ 2.67
PVT1-213ENST00000522414 CHIC1Q5VXU3 224 aa29.73■■■□□ 2.35
PVT1-213ENST00000522414 SENP3Q9H4L4 574 aaPredicted RBP26.96■■□□□ 1.91
PVT1-213ENST00000522414 PHF23Q9BUL5 403 aaPredicted RBP26.63■■□□□ 1.85
PVT1-213ENST00000522414 FOXD1Q16676 465 aa25.27■■□□□ 1.64
PVT1-213ENST00000522414 POTEDQ86YR6 584 aa23.75■■□□□ 1.39
PVT1-213ENST00000522414 MSH5O43196 834 aa23.65■■□□□ 1.38
PVT1-213ENST00000522414 PLPPR3Q6T4P5 718 aa23.54■■□□□ 1.36
PVT1-213ENST00000522414 PIAS4Q8N2W9 510 aaPredicted RBP23.47■■□□□ 1.35
PVT1-213ENST00000522414 PPP6R1Q9UPN7 881 aa23.44■■□□□ 1.34
PVT1-213ENST00000522414 ADRA2BP18089 450 aa23.31■■□□□ 1.32
PVT1-213ENST00000522414 MAPK8IP2Q13387 824 aaPredicted RBP21.54■■□□□ 1.04
PVT1-213ENST00000522414 DMRT2Q9Y5R5 561 aa21.36■■□□□ 1.01
PVT1-213ENST00000522414 SCAF1Q9H7N4 1312 aaKnown RBP21.15■□□□□ 0.98
PVT1-213ENST00000522414 PPP4R3CPQ6ZMV5 832 aa20.64■□□□□ 0.89
PVT1-213ENST00000522414 CACNB1Q02641 598 aaPredicted RBP20.53■□□□□ 0.88
PVT1-213ENST00000522414 DCAF8L1A6NGE4 600 aa20.48■□□□□ 0.87
PVT1-213ENST00000522414 HOXD11P31277 338 aaPredicted RBP20.47■□□□□ 0.87
PVT1-213ENST00000522414 CNKSR2Q8WXI2 1034 aa20.28■□□□□ 0.84
PVT1-213ENST00000522414 RNF39Q9H2S5 420 aa20.23■□□□□ 0.83
PVT1-213ENST00000522414 RNF216Q9NWF9 866 aaPredicted RBP20.19■□□□□ 0.82
PVT1-213ENST00000522414 NISCHQ9Y2I1 1504 aa19.98■□□□□ 0.79
PVT1-213ENST00000522414 C1QBPQ07021 282 aaKnown RBP19.85■□□□□ 0.77
PVT1-213ENST00000522414 DNAJC5BQ9UF47 199 aa19.75■□□□□ 0.75
PVT1-213ENST00000522414 NCBP3Q53F19 620 aaKnown RBP19.64■□□□□ 0.73
PVT1-213ENST00000522414 NPM3O75607 178 aaKnown RBP19.48■□□□□ 0.71
PVT1-213ENST00000522414 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.45■□□□□ 0.76e-6■□□□□ 11
PVT1-213ENST00000522414 U3KPZ7 1027 aaPredicted RBP19.08■□□□□ 0.64
PVT1-213ENST00000522414 SPINK5Q9NQ38 1064 aaPredicted RBP18.93■□□□□ 0.62
PVT1-213ENST00000522414 KCNA4P22459 653 aa18.85■□□□□ 0.61
PVT1-213ENST00000522414 DSG3P32926 999 aa18.84■□□□□ 0.61
PVT1-213ENST00000522414 CAPN15O75808 1086 aa18.82■□□□□ 0.6
PVT1-213ENST00000522414 SLC4A2P04920 1241 aa18.74■□□□□ 0.59
PVT1-213ENST00000522414 POTEHQ6S545 545 aa18.51■□□□□ 0.55
PVT1-213ENST00000522414 TRHP20396 242 aaPredicted RBP18.46■□□□□ 0.55
PVT1-213ENST00000522414 ABCB7O75027 752 aa18.42■□□□□ 0.54
PVT1-213ENST00000522414 ZNF219Q9P2Y4 722 aaPredicted RBP18.35■□□□□ 0.53
PVT1-213ENST00000522414 APLP2Q06481 763 aa18.31■□□□□ 0.52
PVT1-213ENST00000522414 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.26■□□□□ 0.51
PVT1-213ENST00000522414 HNRNPUL2Q1KMD3 747 aaKnown RBP18.26■□□□□ 0.51
PVT1-213ENST00000522414 SAMD1Q6SPF0 538 aaPredicted RBP18.19■□□□□ 0.5
PVT1-213ENST00000522414 CCDC180Q9P1Z9 1646 aa17.98■□□□□ 0.47
PVT1-213ENST00000522414 MYCNP04198 464 aaPredicted RBP17.96■□□□□ 0.47
PVT1-213ENST00000522414 POLA2Q14181 598 aa17.9■□□□□ 0.46
PVT1-213ENST00000522414 RBM42Q9BTD8 480 aaKnown RBP17.86■□□□□ 0.45
PVT1-213ENST00000522414 ABCC9O60706 1549 aa17.85■□□□□ 0.45
PVT1-213ENST00000522414 ATF5Q9Y2D1 282 aaPredicted RBP17.72■□□□□ 0.43
PVT1-213ENST00000522414 CHRDL2Q6WN34 429 aa17.69■□□□□ 0.42
PVT1-213ENST00000522414 SLC4A1APQ9BWU0 796 aaKnown RBP17.66■□□□□ 0.42
PVT1-213ENST00000522414 FOXD4L1Q9NU39 408 aa17.62■□□□□ 0.41
PVT1-213ENST00000522414 AKT1S1Q96B36 256 aa17.43■□□□□ 0.38
PVT1-213ENST00000522414 ZBTB22O15209 634 aa17.39■□□□□ 0.37
PVT1-213ENST00000522414 ZBTB12Q9Y330 459 aaPredicted RBP17.39■□□□□ 0.37
PVT1-213ENST00000522414 OSCARQ8IYS5 282 aa17.37■□□□□ 0.37
PVT1-213ENST00000522414 REM2Q8IYK8 340 aaPredicted RBP17.33■□□□□ 0.36
PVT1-213ENST00000522414 PIP4P2Q8N4L2 257 aa17.23■□□□□ 0.35
PVT1-213ENST00000522414 SP7Q8TDD2 431 aaPredicted RBP17.19■□□□□ 0.34
PVT1-213ENST00000522414 PITPNM1O00562 1244 aa17.16■□□□□ 0.34
PVT1-213ENST00000522414 FXR2P51116 673 aaKnown RBP eCLIP17.07■□□□□ 0.32
PVT1-213ENST00000522414 ATXN8OSP0DMR3 200 aa17.06■□□□□ 0.32
PVT1-213ENST00000522414 DCAF8L2P0C7V8 631 aa16.98■□□□□ 0.31
PVT1-213ENST00000522414 RB1CC1Q8TDY2 1594 aa16.97■□□□□ 0.31
PVT1-213ENST00000522414 HAX1O00165 279 aa16.96■□□□□ 0.31
PVT1-213ENST00000522414 NACADO15069 1562 aa16.92■□□□□ 0.3
PVT1-213ENST00000522414 SPDYE2BA6NHP3 402 aa16.89■□□□□ 0.29
PVT1-213ENST00000522414 SPDYE6P0CI01 402 aa16.89■□□□□ 0.29
PVT1-213ENST00000522414 SPDYE2Q495Y8 402 aa16.89■□□□□ 0.29
PVT1-213ENST00000522414 FBLN2P98095 1184 aa16.86■□□□□ 0.29
PVT1-213ENST00000522414 EVX2Q03828 476 aa16.86■□□□□ 0.29
PVT1-213ENST00000522414 MKRN4PQ13434 485 aaPredicted RBP16.86■□□□□ 0.29
PVT1-213ENST00000522414 MYO15BQ96JP2 1530 aa16.83■□□□□ 0.28
PVT1-213ENST00000522414 PABPN1Q86U42 306 aaKnown RBP eCLIP16.74■□□□□ 0.27
PVT1-213ENST00000522414 CLEC11AQ9Y240 323 aa16.69■□□□□ 0.26
PVT1-213ENST00000522414 SSUH2Q9Y2M2 353 aa16.69■□□□□ 0.26
PVT1-213ENST00000522414 PRKAR2AP13861 404 aaKnown RBP16.68■□□□□ 0.26
PVT1-213ENST00000522414 SPDYE1Q8NFV5 336 aaPredicted RBP16.66■□□□□ 0.26
PVT1-213ENST00000522414 ZNF692Q9BU19 519 aaPredicted RBP16.65■□□□□ 0.26
PVT1-213ENST00000522414 UNC13AQ9UPW8 1703 aa16.64■□□□□ 0.25
PVT1-213ENST00000522414 DCAF1Q9Y4B6 1507 aa16.63■□□□□ 0.25
PVT1-213ENST00000522414 ZCCHC6Q5VYS8 1495 aaKnown RBP16.62■□□□□ 0.25
PVT1-213ENST00000522414 BICRAQ9NZM4 1560 aa16.53■□□□□ 0.24
PVT1-213ENST00000522414 C19orf67A6NJJ6 358 aa16.53■□□□□ 0.24
PVT1-213ENST00000522414 CHADLQ6NUI6 762 aa16.48■□□□□ 0.23
PVT1-213ENST00000522414 SHROOM4Q9ULL8 1493 aa16.42■□□□□ 0.22
PVT1-213ENST00000522414 GABBR2O75899 941 aa16.38■□□□□ 0.21
PVT1-213ENST00000522414 PRR29P0C7W0 189 aa16.35■□□□□ 0.21
PVT1-213ENST00000522414 CSRNP3Q8WYN3 585 aa16.24■□□□□ 0.19
PVT1-213ENST00000522414 SCRIBQ14160 1630 aa16.22■□□□□ 0.19
PVT1-213ENST00000522414 FARP1Q9Y4F1 1045 aaPredicted RBP16.15■□□□□ 0.18
PVT1-213ENST00000522414 CD44P16070 742 aaKnown RBP16.12■□□□□ 0.17
PVT1-213ENST00000522414 LHX8Q68G74 356 aa16.12■□□□□ 0.17
PVT1-213ENST00000522414 POTEIP0CG38 1075 aa16.1■□□□□ 0.17
PVT1-213ENST00000522414 EIF4G1Q04637 1599 aaKnown RBP16.07■□□□□ 0.16
PVT1-213ENST00000522414 CC2D2AQ9P2K1 1620 aa16.05■□□□□ 0.16
PVT1-213ENST00000522414 CECR2Q9BXF3 1484 aa16.04■□□□□ 0.16
PVT1-213ENST00000522414 CREBZFQ9NS37 354 aa15.95■□□□□ 0.14
PVT1-213ENST00000522414 ZNF579Q8NAF0 562 aaKnown RBP15.87■□□□□ 0.13
PVT1-213ENST00000522414 CLCN6P51797 869 aa15.85■□□□□ 0.13
PVT1-213ENST00000522414 ZRANB1Q9UGI0 708 aa15.85■□□□□ 0.13
PVT1-213ENST00000522414 EHMT2Q96KQ7 1210 aa15.82■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 133.3 ms