RNA–Protein interactions for RNA: ENST00000376387.4

TM9SF2-201, Transcript of transmembrane 9 superfamily member 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TM9SF2, Length 3,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF2-201ENST00000376387 NISCHQ9Y2I1 1504 aa22.44■■□□□ 1.18
TM9SF2-201ENST00000376387 SHROOM4Q9ULL8 1493 aa19.79■□□□□ 0.76
TM9SF2-201ENST00000376387 SUPT5HO00267 1087 aaKnown RBP19.58■□□□□ 0.72
TM9SF2-201ENST00000376387 CCDC180Q9P1Z9 1646 aa19.34■□□□□ 0.69
TM9SF2-201ENST00000376387 HRCP23327 699 aa19.34■□□□□ 0.69
TM9SF2-201ENST00000376387 MYO15BQ96JP2 1530 aa19.31■□□□□ 0.68
TM9SF2-201ENST00000376387 CHIC1Q5VXU3 224 aa19.15■□□□□ 0.66
TM9SF2-201ENST00000376387 PCGF6Q9BYE7 350 aa19.13■□□□□ 0.65
TM9SF2-201ENST00000376387 PPARGC1BQ86YN6 1023 aaKnown RBP19.09■□□□□ 0.65
TM9SF2-201ENST00000376387 ZCCHC6Q5VYS8 1495 aaKnown RBP19.05■□□□□ 0.64
TM9SF2-201ENST00000376387 DCAF8L2P0C7V8 631 aa18.77■□□□□ 0.6
TM9SF2-201ENST00000376387 LOC105371045A0A1W2PR82 267 aa18.76■□□□□ 0.59
TM9SF2-201ENST00000376387 SLC24A1O60721 1099 aa18.71■□□□□ 0.59
TM9SF2-201ENST00000376387 PELP1Q8IZL8 1130 aaKnown RBP18.7■□□□□ 0.58
TM9SF2-201ENST00000376387 DCAF1Q9Y4B6 1507 aa18.68■□□□□ 0.58
TM9SF2-201ENST00000376387 PRKCSHP14314 528 aaPredicted RBP18.59■□□□□ 0.57
TM9SF2-201ENST00000376387 TRIM26Q12899 539 aaPredicted RBP18.49■□□□□ 0.55
TM9SF2-201ENST00000376387 MYT1Q01538 1121 aa18.48■□□□□ 0.55
TM9SF2-201ENST00000376387 SCAF1Q9H7N4 1312 aaKnown RBP18.23■□□□□ 0.51
TM9SF2-201ENST00000376387 ZEB1P37275 1124 aaPredicted RBP18.17■□□□□ 0.5
TM9SF2-201ENST00000376387 FAM9AQ8IZU1 332 aaPredicted RBP18.13■□□□□ 0.49
TM9SF2-201ENST00000376387 EHMT2Q96KQ7 1210 aa18.11■□□□□ 0.49
TM9SF2-201ENST00000376387 ABCC9O60706 1549 aa18.08■□□□□ 0.49
TM9SF2-201ENST00000376387 TRIM41Q8WV44 630 aa18.07■□□□□ 0.48
TM9SF2-201ENST00000376387 RSF1Q96T23 1441 aaPredicted RBP18■□□□□ 0.47
TM9SF2-201ENST00000376387 NACADO15069 1562 aa17.96■□□□□ 0.47
TM9SF2-201ENST00000376387 RB1CC1Q8TDY2 1594 aa17.95■□□□□ 0.46
TM9SF2-201ENST00000376387 SCRIBQ14160 1630 aa17.89■□□□□ 0.45
TM9SF2-201ENST00000376387 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.84■□□□□ 0.45
TM9SF2-201ENST00000376387 TTBK1Q5TCY1 1321 aaPredicted RBP17.83■□□□□ 0.44
TM9SF2-201ENST00000376387 NEUROD1Q13562 356 aa17.81■□□□□ 0.44
TM9SF2-201ENST00000376387 ACIN1Q9UKV3 1341 aaKnown RBP17.79■□□□□ 0.44
TM9SF2-201ENST00000376387 ERICH6Q7L0X2 663 aa17.74■□□□□ 0.43
TM9SF2-201ENST00000376387 CCER1Q8TC90 406 aaPredicted RBP17.72■□□□□ 0.43
TM9SF2-201ENST00000376387 APLP2Q06481 763 aa17.69■□□□□ 0.42
TM9SF2-201ENST00000376387 GTF3C3Q9Y5Q9 886 aa17.66■□□□□ 0.42
TM9SF2-201ENST00000376387 CECR2Q9BXF3 1484 aa17.63■□□□□ 0.41
TM9SF2-201ENST00000376387 DIEXFQ68CQ4 756 aaKnown RBP17.63■□□□□ 0.41
TM9SF2-201ENST00000376387 MROH2BQ7Z745 1585 aa17.57■□□□□ 0.4
TM9SF2-201ENST00000376387 BCL11AQ9H165 835 aa17.54■□□□□ 0.4
TM9SF2-201ENST00000376387 WIZO95785 1651 aa17.53■□□□□ 0.4
TM9SF2-201ENST00000376387 CENPBP07199 599 aaPredicted RBP17.5■□□□□ 0.39
TM9SF2-201ENST00000376387 UNC13AQ9UPW8 1703 aa17.43■□□□□ 0.38
TM9SF2-201ENST00000376387 EIF4G1Q04637 1599 aaKnown RBP17.4■□□□□ 0.38
TM9SF2-201ENST00000376387 YTHDC1Q96MU7 727 aaKnown RBP17.38■□□□□ 0.37
TM9SF2-201ENST00000376387 DAXXQ9UER7 740 aaPredicted RBP17.36■□□□□ 0.37
TM9SF2-201ENST00000376387 ABCC8Q09428 1581 aa17.36■□□□□ 0.37
TM9SF2-201ENST00000376387 CCDC88BA6NC98 1476 aa17.33■□□□□ 0.37
TM9SF2-201ENST00000376387 CEP162Q5TB80 1403 aa17.33■□□□□ 0.37
TM9SF2-201ENST00000376387 WRNQ14191 1432 aaPredicted RBP eCLIP17.33■□□□□ 0.36
TM9SF2-201ENST00000376387 ZNF316A6NFI3 1004 aaPredicted RBP17.33■□□□□ 0.36
TM9SF2-201ENST00000376387 BAZ1AQ9NRL2 1556 aaPredicted RBP17.32■□□□□ 0.36
TM9SF2-201ENST00000376387 SOGA1O94964 1423 aa17.27■□□□□ 0.36
TM9SF2-201ENST00000376387 MIER1Q8N108 512 aa17.25■□□□□ 0.35
TM9SF2-201ENST00000376387 BICRAQ9NZM4 1560 aa17.24■□□□□ 0.35
TM9SF2-201ENST00000376387 RUSC2Q8N2Y8 1516 aa17.21■□□□□ 0.35
TM9SF2-201ENST00000376387 TNIKQ9UKE5 1360 aa17.19■□□□□ 0.34
TM9SF2-201ENST00000376387 PLEKHG5O94827 1062 aa17.18■□□□□ 0.34
TM9SF2-201ENST00000376387 UBTFP17480 764 aaKnown RBP17.18■□□□□ 0.34
TM9SF2-201ENST00000376387 HNRNPUL2Q1KMD3 747 aaKnown RBP17.15■□□□□ 0.34
TM9SF2-201ENST00000376387 EIF5BO60841 1220 aaKnown RBP17.12■□□□□ 0.33
TM9SF2-201ENST00000376387 CSRNP3Q8WYN3 585 aa17.12■□□□□ 0.33
TM9SF2-201ENST00000376387 TOP2AP11388 1531 aaKnown RBP17.11■□□□□ 0.33
TM9SF2-201ENST00000376387 SMARCA2P51531 1590 aa17.1■□□□□ 0.33
TM9SF2-201ENST00000376387 SMARCA4P51532 1647 aa17.05■□□□□ 0.32
TM9SF2-201ENST00000376387 PABPN1Q86U42 306 aaKnown RBP eCLIP17.05■□□□□ 0.32
TM9SF2-201ENST00000376387 GOLGA3Q08378 1498 aa17.01■□□□□ 0.31
TM9SF2-201ENST00000376387 EEA1Q15075 1411 aa16.98■□□□□ 0.31
TM9SF2-201ENST00000376387 RANGAP1P46060 587 aaPredicted RBP16.92■□□□□ 0.3
TM9SF2-201ENST00000376387 CLIP1P30622 1438 aa16.89■□□□□ 0.29
TM9SF2-201ENST00000376387 SUPT16HQ9Y5B9 1047 aaKnown RBP16.87■□□□□ 0.29
TM9SF2-201ENST00000376387 PEG3Q9GZU2 1588 aa16.87■□□□□ 0.29
TM9SF2-201ENST00000376387 CEP164Q9UPV0 1460 aa16.85■□□□□ 0.29
TM9SF2-201ENST00000376387 VPS8Q8N3P4 1428 aa16.84■□□□□ 0.29
TM9SF2-201ENST00000376387 SYNJ1O43426 1573 aa16.84■□□□□ 0.29
TM9SF2-201ENST00000376387 KIF21BO75037 1637 aa16.82■□□□□ 0.28
TM9SF2-201ENST00000376387 RAPGEF2Q9Y4G8 1499 aa16.79■□□□□ 0.28
TM9SF2-201ENST00000376387 DHX57Q6P158 1386 aaKnown RBP16.77■□□□□ 0.28
TM9SF2-201ENST00000376387 PLPPR3Q6T4P5 718 aa16.77■□□□□ 0.27
TM9SF2-201ENST00000376387 TSHZ2Q9NRE2 1034 aa16.73■□□□□ 0.27
TM9SF2-201ENST00000376387 ATAD2BQ9ULI0 1458 aa16.73■□□□□ 0.27
TM9SF2-201ENST00000376387 KCNH8Q96L42 1107 aa16.7■□□□□ 0.26
TM9SF2-201ENST00000376387 BAZ1BQ9UIG0 1483 aaKnown RBP16.68■□□□□ 0.26
TM9SF2-201ENST00000376387 AEBP2Q6ZN18 517 aaPredicted RBP16.68■□□□□ 0.26
TM9SF2-201ENST00000376387 KANK4Q5T7N3 995 aaPredicted RBP16.68■□□□□ 0.26
TM9SF2-201ENST00000376387 CLSPNQ9HAW4 1339 aa16.64■□□□□ 0.25
TM9SF2-201ENST00000376387 BCANQ96GW7 911 aa16.6■□□□□ 0.25
TM9SF2-201ENST00000376387 ARAP1Q96P48 1450 aa16.59■□□□□ 0.25
TM9SF2-201ENST00000376387 ANP32EQ9BTT0 268 aa16.59■□□□□ 0.25
TM9SF2-201ENST00000376387 HMGXB3Q12766 1538 aa16.58■□□□□ 0.24
TM9SF2-201ENST00000376387 NCAPD3P42695 1498 aa16.57■□□□□ 0.24
TM9SF2-201ENST00000376387 ITGAEP38570 1179 aa16.56■□□□□ 0.24
TM9SF2-201ENST00000376387 RRBP1Q9P2E9 1410 aaKnown RBP16.51■□□□□ 0.23
TM9SF2-201ENST00000376387 PODXL2Q9NZ53 605 aa16.51■□□□□ 0.23
TM9SF2-201ENST00000376387 KLHL34Q8N239 644 aa16.49■□□□□ 0.23
TM9SF2-201ENST00000376387 TOP2BQ02880 1626 aa16.49■□□□□ 0.23
TM9SF2-201ENST00000376387 FKBP8Q14318 412 aa16.48■□□□□ 0.23
TM9SF2-201ENST00000376387 PRXQ9BXM0 1461 aa16.47■□□□□ 0.23
TM9SF2-201ENST00000376387 CUX2O14529 1486 aa16.45■□□□□ 0.22
TM9SF2-201ENST00000376387 CCNB3Q8WWL7 1395 aa16.45■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms