Protein–RNA interactions for Protein: Q9Y3X0

CCDC9, Coiled-coil domain-containing protein 9, humanhuman

Known RBP Predictions only

Length 531 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9Q9Y3X0 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC9Q9Y3X0 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC9Q9Y3X0 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC9Q9Y3X0 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC9Q9Y3X0 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC9Q9Y3X0 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC9Q9Y3X0 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC9Q9Y3X0 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC20.7■□□□□ 0.9
CCDC9Q9Y3X0 AC026904.3-201ENST00000636550 1530 ntTSL 5 BASIC20.7■□□□□ 0.9
CCDC9Q9Y3X0 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
CCDC9Q9Y3X0 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
CCDC9Q9Y3X0 SYCE2-201ENST00000293695 1231 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC9Q9Y3X0 AKIP1-201ENST00000299576 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC9Q9Y3X0 COL5A1-AS1-201ENST00000371813 336 ntTSL 2 BASIC20.7■□□□□ 0.9
CCDC9Q9Y3X0 POU5F1P6-201ENST00000466990 990 ntBASIC20.7■□□□□ 0.9
CCDC9Q9Y3X0 LY6E-208ENST00000520531 490 ntTSL 2 BASIC20.7■□□□□ 0.9
CCDC9Q9Y3X0 AC005730.2-201ENST00000564549 1184 ntBASIC20.7■□□□□ 0.9
CCDC9Q9Y3X0 LRWD1-209ENST00000626402 138 ntTSL 3 BASIC20.7■□□□□ 0.9
CCDC9Q9Y3X0 CDK3-202ENST00000448471 1570 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
CCDC9Q9Y3X0 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC20.7■□□□□ 0.9
CCDC9Q9Y3X0 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC9Q9Y3X0 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
CCDC9Q9Y3X0 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC9Q9Y3X0 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC20.7■□□□□ 0.9
CCDC9Q9Y3X0 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC9Q9Y3X0 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC20.7■□□□□ 0.9
CCDC9Q9Y3X0 AHDC1-202ENST00000374011 6438 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
CCDC9Q9Y3X0 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC9Q9Y3X0 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
CCDC9Q9Y3X0 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC9Q9Y3X0 DDX39A-201ENST00000242776 1471 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC9Q9Y3X0 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC9Q9Y3X0 AP001094.4-201ENST00000579008 2176 ntBASIC20.69■□□□□ 0.9
CCDC9Q9Y3X0 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC9Q9Y3X0 HLA-A-202ENST00000376806 1854 ntBASIC20.69■□□□□ 0.9
CCDC9Q9Y3X0 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC9Q9Y3X0 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC20.69■□□□□ 0.9
CCDC9Q9Y3X0 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC9Q9Y3X0 EDF1-202ENST00000371648 809 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC9Q9Y3X0 SMS-201ENST00000379404 1174 ntTSL 3 BASIC20.69■□□□□ 0.9
CCDC9Q9Y3X0 KRTAP20-4-201ENST00000382828 224 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
CCDC9Q9Y3X0 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC20.69■□□□□ 0.9
CCDC9Q9Y3X0 KLF2P2-201ENST00000416807 1039 ntBASIC20.69■□□□□ 0.9
CCDC9Q9Y3X0 AL450469.1-201ENST00000418953 461 ntTSL 2 BASIC20.69■□□□□ 0.9
CCDC9Q9Y3X0 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC20.69■□□□□ 0.9
CCDC9Q9Y3X0 RN7SL48P-201ENST00000579283 293 ntBASIC20.69■□□□□ 0.9
CCDC9Q9Y3X0 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC9Q9Y3X0 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
CCDC9Q9Y3X0 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC20.69■□□□□ 0.9
CCDC9Q9Y3X0 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC20.69■□□□□ 0.9
CCDC9Q9Y3X0 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC20.69■□□□□ 0.9
CCDC9Q9Y3X0 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC9Q9Y3X0 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC20.69■□□□□ 0.9
CCDC9Q9Y3X0 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC20.69■□□□□ 0.9
CCDC9Q9Y3X0 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC9Q9Y3X0 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC9Q9Y3X0 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC9Q9Y3X0 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC9Q9Y3X0 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC9Q9Y3X0 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
CCDC9Q9Y3X0 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC9Q9Y3X0 NUDT1-201ENST00000339737 698 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC9Q9Y3X0 NUDT1-202ENST00000343985 771 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC9Q9Y3X0 RNU1-114P-201ENST00000365297 166 ntBASIC20.68■□□□□ 0.9
CCDC9Q9Y3X0 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC9Q9Y3X0 IGHV3-53-201ENST00000390627 571 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
CCDC9Q9Y3X0 ACTBP8-201ENST00000403258 1108 ntBASIC20.68■□□□□ 0.9
CCDC9Q9Y3X0 AC011742.3-201ENST00000439053 820 ntBASIC20.68■□□□□ 0.9
CCDC9Q9Y3X0 AC093151.3-202ENST00000445073 709 ntTSL 3 BASIC20.68■□□□□ 0.9
CCDC9Q9Y3X0 AC022217.1-201ENST00000521069 738 ntBASIC20.68■□□□□ 0.9
CCDC9Q9Y3X0 PPY2P-201ENST00000582808 702 ntBASIC20.68■□□□□ 0.9
CCDC9Q9Y3X0 PPY2P-202ENST00000583761 657 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC9Q9Y3X0 RN7SL736P-201ENST00000613111 269 ntBASIC20.68■□□□□ 0.9
CCDC9Q9Y3X0 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC20.68■□□□□ 0.9
CCDC9Q9Y3X0 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC20.68■□□□□ 0.9
CCDC9Q9Y3X0 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC20.68■□□□□ 0.9
CCDC9Q9Y3X0 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC20.68■□□□□ 0.9
CCDC9Q9Y3X0 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC9Q9Y3X0 CHAT-212ENST00000640822 1412 ntTSL 5 BASIC20.68■□□□□ 0.9
CCDC9Q9Y3X0 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC9Q9Y3X0 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC9Q9Y3X0 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC20.68■□□□□ 0.9
CCDC9Q9Y3X0 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
CCDC9Q9Y3X0 L2HGDH-202ENST00000267436 6414 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC9Q9Y3X0 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC9Q9Y3X0 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC9Q9Y3X0 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC9Q9Y3X0 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC9Q9Y3X0 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC9Q9Y3X0 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
CCDC9Q9Y3X0 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC9Q9Y3X0 DLG1-AS1-202ENST00000430666 1694 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC9Q9Y3X0 TK1-203ENST00000588734 1681 ntTSL 2 BASIC20.67■□□□□ 0.9
CCDC9Q9Y3X0 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC20.67■□□□□ 0.9
CCDC9Q9Y3X0 TOMM70-201ENST00000284320 4409 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC9Q9Y3X0 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
CCDC9Q9Y3X0 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
CCDC9Q9Y3X0 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
CCDC9Q9Y3X0 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC20.67■□□□□ 0.9
CCDC9Q9Y3X0 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC20.67■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 73.7 ms