RNA–Protein interactions for RNA: ENST00000250448.2

FOXA1-201, Transcript of forkhead box A1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene FOXA1, Length 2,862 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1-201ENST00000250448 NISCHQ9Y2I1 1504 aa36.88■■■■□ 3.49
FOXA1-201ENST00000250448 CCDC180Q9P1Z9 1646 aa31.93■■■□□ 2.7
FOXA1-201ENST00000250448 ZCCHC6Q5VYS8 1495 aaKnown RBP30.97■■■□□ 2.55
FOXA1-201ENST00000250448 DCAF8L2P0C7V8 631 aa30.89■■■□□ 2.54
FOXA1-201ENST00000250448 SHROOM4Q9ULL8 1493 aa30.59■■■□□ 2.49
FOXA1-201ENST00000250448 ABCC9O60706 1549 aa30.54■■■□□ 2.48
FOXA1-201ENST00000250448 DCAF1Q9Y4B6 1507 aa30.27■■■□□ 2.44
FOXA1-201ENST00000250448 MYO15BQ96JP2 1530 aa29.83■■■□□ 2.37
FOXA1-201ENST00000250448 NACADO15069 1562 aa29.77■■■□□ 2.36
FOXA1-201ENST00000250448 SCRIBQ14160 1630 aa29.72■■■□□ 2.35
FOXA1-201ENST00000250448 RB1CC1Q8TDY2 1594 aa29.55■■■□□ 2.32
FOXA1-201ENST00000250448 SUPT5HO00267 1087 aaKnown RBP29.44■■■□□ 2.3
FOXA1-201ENST00000250448 UNC13AQ9UPW8 1703 aa29.07■■■□□ 2.24
FOXA1-201ENST00000250448 PABPN1Q86U42 306 aaKnown RBP eCLIP28.95■■■□□ 2.22
FOXA1-201ENST00000250448 CECR2Q9BXF3 1484 aa28.84■■■□□ 2.21
FOXA1-201ENST00000250448 BICRAQ9NZM4 1560 aa28.76■■■□□ 2.2
FOXA1-201ENST00000250448 RSF1Q96T23 1441 aaPredicted RBP28.72■■■□□ 2.19
FOXA1-201ENST00000250448 MROH2BQ7Z745 1585 aa28.62■■■□□ 2.17
FOXA1-201ENST00000250448 BAZ1AQ9NRL2 1556 aaPredicted RBP28.42■■■□□ 2.14
FOXA1-201ENST00000250448 WIZO95785 1651 aa28.41■■■□□ 2.14
FOXA1-201ENST00000250448 SMARCA4P51532 1647 aa28.34■■■□□ 2.13
FOXA1-201ENST00000250448 CHIC1Q5VXU3 224 aa28.17■■■□□ 2.1
FOXA1-201ENST00000250448 HRCP23327 699 aa27.98■■■□□ 2.07
FOXA1-201ENST00000250448 TOP2AP11388 1531 aaKnown RBP27.95■■■□□ 2.06
FOXA1-201ENST00000250448 EIF4G1Q04637 1599 aaKnown RBP27.89■■■□□ 2.06
FOXA1-201ENST00000250448 ATAD2BQ9ULI0 1458 aa27.88■■■□□ 2.05
FOXA1-201ENST00000250448 PEG3Q9GZU2 1588 aa27.84■■■□□ 2.05
FOXA1-201ENST00000250448 CCDC88BA6NC98 1476 aa27.79■■■□□ 2.04
FOXA1-201ENST00000250448 SMARCA2P51531 1590 aa27.76■■■□□ 2.03
FOXA1-201ENST00000250448 BAZ1BQ9UIG0 1483 aaKnown RBP27.75■■■□□ 2.03
FOXA1-201ENST00000250448 PCGF6Q9BYE7 350 aa27.66■■■□□ 2.02
FOXA1-201ENST00000250448 NCAPD3P42695 1498 aa27.54■■■□□ 2
FOXA1-201ENST00000250448 TRIM41Q8WV44 630 aa27.51■■□□□ 1.99
FOXA1-201ENST00000250448 CC2D2AQ9P2K1 1620 aa27.5■■□□□ 1.99
FOXA1-201ENST00000250448 HMGXB3Q12766 1538 aa27.45■■□□□ 1.99
FOXA1-201ENST00000250448 ABCC8Q09428 1581 aa27.35■■□□□ 1.97
FOXA1-201ENST00000250448 LOC105371045A0A1W2PR82 267 aa27.31■■□□□ 1.96
FOXA1-201ENST00000250448 PPARGC1BQ86YN6 1023 aaKnown RBP27.29■■□□□ 1.96
FOXA1-201ENST00000250448 FAM9AQ8IZU1 332 aaPredicted RBP27.25■■□□□ 1.95
FOXA1-201ENST00000250448 DNAJC5BQ9UF47 199 aa27.14■■□□□ 1.93
FOXA1-201ENST00000250448 TRIM26Q12899 539 aaPredicted RBP27.08■■□□□ 1.93
FOXA1-201ENST00000250448 EHMT2Q96KQ7 1210 aa27.06■■□□□ 1.92
FOXA1-201ENST00000250448 WRNQ14191 1432 aaPredicted RBP eCLIP27.03■■□□□ 1.92
FOXA1-201ENST00000250448 CFTRP13569 1480 aa26.99■■□□□ 1.91
FOXA1-201ENST00000250448 SYNJ1O43426 1573 aa26.95■■□□□ 1.9
FOXA1-201ENST00000250448 CADPSQ9ULU8 1353 aa26.92■■□□□ 1.9
FOXA1-201ENST00000250448 NESP48681 1621 aa26.86■■□□□ 1.89
FOXA1-201ENST00000250448 SOGA1O94964 1423 aa26.86■■□□□ 1.89
FOXA1-201ENST00000250448 RUSC2Q8N2Y8 1516 aa26.79■■□□□ 1.88
FOXA1-201ENST00000250448 PRDM2Q13029 1718 aa26.73■■□□□ 1.87
FOXA1-201ENST00000250448 CUX1P39880 1505 aa26.72■■□□□ 1.87
FOXA1-201ENST00000250448 TOP2BQ02880 1626 aa26.71■■□□□ 1.87
FOXA1-201ENST00000250448 ZEB1P37275 1124 aaPredicted RBP26.68■■□□□ 1.86
FOXA1-201ENST00000250448 FANCD2Q9BXW9 1451 aa26.67■■□□□ 1.86
FOXA1-201ENST00000250448 BIVM-ERCC5R4GMW8 1640 aa26.64■■□□□ 1.85
FOXA1-201ENST00000250448 CSRNP3Q8WYN3 585 aa26.58■■□□□ 1.85
FOXA1-201ENST00000250448 LAMC3Q9Y6N6 1575 aa26.56■■□□□ 1.84
FOXA1-201ENST00000250448 EEA1Q15075 1411 aa26.49■■□□□ 1.83
FOXA1-201ENST00000250448 CEP164Q9UPV0 1460 aa26.45■■□□□ 1.82
FOXA1-201ENST00000250448 FGD5Q6ZNL6 1462 aa26.43■■□□□ 1.82
FOXA1-201ENST00000250448 PDS5BQ9NTI5 1447 aa26.42■■□□□ 1.82
FOXA1-201ENST00000250448 KIF21AQ7Z4S6 1674 aa26.4■■□□□ 1.82
FOXA1-201ENST00000250448 UBTFP17480 764 aaKnown RBP26.38■■□□□ 1.81
FOXA1-201ENST00000250448 TOPBP1Q92547 1522 aa26.37■■□□□ 1.81
FOXA1-201ENST00000250448 URB2Q14146 1524 aaKnown RBP26.35■■□□□ 1.81
FOXA1-201ENST00000250448 DNMBPQ6XZF7 1577 aa26.35■■□□□ 1.81
FOXA1-201ENST00000250448 PELP1Q8IZL8 1130 aaKnown RBP26.31■■□□□ 1.8
FOXA1-201ENST00000250448 RAD54L2Q9Y4B4 1467 aa26.31■■□□□ 1.8
FOXA1-201ENST00000250448 CUX2O14529 1486 aa26.3■■□□□ 1.8
FOXA1-201ENST00000250448 KIF27Q86VH2 1401 aa26.29■■□□□ 1.8
FOXA1-201ENST00000250448 GOLGA3Q08378 1498 aa26.27■■□□□ 1.8
FOXA1-201ENST00000250448 POLA1P09884 1462 aaPredicted RBP26.27■■□□□ 1.8
FOXA1-201ENST00000250448 RAPGEF2Q9Y4G8 1499 aa26.26■■□□□ 1.79
FOXA1-201ENST00000250448 KIF21BO75037 1637 aa26.2■■□□□ 1.79
FOXA1-201ENST00000250448 TNIKQ9UKE5 1360 aa26.2■■□□□ 1.78
FOXA1-201ENST00000250448 RANGAP1P46060 587 aaPredicted RBP26.19■■□□□ 1.78
FOXA1-201ENST00000250448 CEP162Q5TB80 1403 aa26.17■■□□□ 1.78
FOXA1-201ENST00000250448 PRXQ9BXM0 1461 aa26.12■■□□□ 1.77
FOXA1-201ENST00000250448 IGF1RP08069 1367 aa26.12■■□□□ 1.77
FOXA1-201ENST00000250448 ERCC6Q03468 1493 aa26.1■■□□□ 1.77
FOXA1-201ENST00000250448 MRC2Q9UBG0 1479 aa26.09■■□□□ 1.77
FOXA1-201ENST00000250448 ABCA10Q8WWZ4 1543 aa26.08■■□□□ 1.77
FOXA1-201ENST00000250448 TDRD9Q8NDG6 1382 aaKnown RBP26.07■■□□□ 1.76
FOXA1-201ENST00000250448 SCAF1Q9H7N4 1312 aaKnown RBP26■■□□□ 1.75
FOXA1-201ENST00000250448 CARMIL1Q5VZK9 1371 aa25.99■■□□□ 1.75
FOXA1-201ENST00000250448 ERICH3Q5RHP9 1530 aa25.99■■□□□ 1.75
FOXA1-201ENST00000250448 WDR97A6NE52 1622 aa25.96■■□□□ 1.75
FOXA1-201ENST00000250448 CLIP1P30622 1438 aa25.94■■□□□ 1.74
FOXA1-201ENST00000250448 TARBP1Q13395 1621 aaKnown RBP25.93■■□□□ 1.74
FOXA1-201ENST00000250448 WDR62O43379 1518 aa25.91■■□□□ 1.74
FOXA1-201ENST00000250448 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.89■■□□□ 1.74
FOXA1-201ENST00000250448 GAPVD1Q14C86 1478 aa25.89■■□□□ 1.73
FOXA1-201ENST00000250448 TTBK1Q5TCY1 1321 aaPredicted RBP25.87■■□□□ 1.73
FOXA1-201ENST00000250448 AQRO60306 1485 aaKnown RBP eCLIP25.87■■□□□ 1.732e-7■■■■■ 44
FOXA1-201ENST00000250448 CCER1Q8TC90 406 aaPredicted RBP25.87■■□□□ 1.73
FOXA1-201ENST00000250448 ABCA5Q8WWZ7 1642 aa25.86■■□□□ 1.73
FOXA1-201ENST00000250448 THOC2Q8NI27 1593 aaKnown RBP25.86■■□□□ 1.73
FOXA1-201ENST00000250448 ZNF608Q9ULD9 1512 aaPredicted RBP25.82■■□□□ 1.72
FOXA1-201ENST00000250448 MYT1Q01538 1121 aa25.77■■□□□ 1.72
FOXA1-201ENST00000250448 IFT140Q96RY7 1462 aa25.75■■□□□ 1.71
Retrieved 100 of 20,778 RNA–protein pairs in 87.9 ms