Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC15.62■□□□□ 0.09
TRIM39Q9HCM9 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
TRIM39Q9HCM9 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
TRIM39Q9HCM9 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
TRIM39Q9HCM9 ZNF628-203ENST00000598519 3847 ntAPPRIS P2 TSL 1 (best) BASIC15.62■□□□□ 0.09
TRIM39Q9HCM9 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
TRIM39Q9HCM9 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC15.62■□□□□ 0.09
TRIM39Q9HCM9 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
TRIM39Q9HCM9 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
TRIM39Q9HCM9 PHLDB1-202ENST00000361417 5753 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
TRIM39Q9HCM9 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC15.62■□□□□ 0.09
TRIM39Q9HCM9 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
TRIM39Q9HCM9 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
TRIM39Q9HCM9 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC15.62■□□□□ 0.09
TRIM39Q9HCM9 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
TRIM39Q9HCM9 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC15.62■□□□□ 0.09
TRIM39Q9HCM9 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
TRIM39Q9HCM9 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC15.61■□□□□ 0.09
TRIM39Q9HCM9 NORAD-201ENST00000565493 5339 ntBASIC15.61■□□□□ 0.09
TRIM39Q9HCM9 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
TRIM39Q9HCM9 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC15.61■□□□□ 0.09
TRIM39Q9HCM9 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC15.61■□□□□ 0.09
TRIM39Q9HCM9 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC15.61■□□□□ 0.09
TRIM39Q9HCM9 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
TRIM39Q9HCM9 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
TRIM39Q9HCM9 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
TRIM39Q9HCM9 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
TRIM39Q9HCM9 IL12RB2-206ENST00000544434 3782 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
TRIM39Q9HCM9 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
TRIM39Q9HCM9 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
TRIM39Q9HCM9 OSM-203ENST00000403463 464 ntTSL 3 BASIC15.61■□□□□ 0.09
TRIM39Q9HCM9 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC15.61■□□□□ 0.09
TRIM39Q9HCM9 TOMM22P5-201ENST00000416399 439 ntBASIC15.61■□□□□ 0.09
TRIM39Q9HCM9 AC015922.1-201ENST00000421102 1152 ntBASIC15.61■□□□□ 0.09
TRIM39Q9HCM9 MEP1AP4-201ENST00000423244 1087 ntBASIC15.61■□□□□ 0.09
TRIM39Q9HCM9 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC15.61■□□□□ 0.09
TRIM39Q9HCM9 AC093004.1-201ENST00000508850 424 ntBASIC15.61■□□□□ 0.09
TRIM39Q9HCM9 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC15.61■□□□□ 0.09
TRIM39Q9HCM9 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC15.61■□□□□ 0.09
TRIM39Q9HCM9 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC15.61■□□□□ 0.09
TRIM39Q9HCM9 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC15.61■□□□□ 0.09
TRIM39Q9HCM9 LINC02084-201ENST00000606069 1096 ntBASIC15.61■□□□□ 0.09
TRIM39Q9HCM9 AC004790.1-201ENST00000612686 536 ntBASIC15.61■□□□□ 0.09
TRIM39Q9HCM9 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC15.61■□□□□ 0.09
TRIM39Q9HCM9 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
TRIM39Q9HCM9 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
TRIM39Q9HCM9 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC15.61■□□□□ 0.09
TRIM39Q9HCM9 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
TRIM39Q9HCM9 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
TRIM39Q9HCM9 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
TRIM39Q9HCM9 EXT1-201ENST00000378204 8270 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
TRIM39Q9HCM9 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC15.61■□□□□ 0.09
TRIM39Q9HCM9 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC15.61■□□□□ 0.09
TRIM39Q9HCM9 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC15.61■□□□□ 0.09
TRIM39Q9HCM9 SLC16A3-211ENST00000581287 4830 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
TRIM39Q9HCM9 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC15.6■□□□□ 0.09
TRIM39Q9HCM9 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
TRIM39Q9HCM9 DYNLL2-201ENST00000579991 6805 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
TRIM39Q9HCM9 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
TRIM39Q9HCM9 LINC02228-204ENST00000642115 2962 ntBASIC15.6■□□□□ 0.09
TRIM39Q9HCM9 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC15.6■□□□□ 0.09
TRIM39Q9HCM9 NUDT16-203ENST00000537561 5943 ntTSL 5 BASIC15.6■□□□□ 0.09
TRIM39Q9HCM9 SENP6-205ENST00000447266 6501 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
TRIM39Q9HCM9 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
TRIM39Q9HCM9 TRAPPC11-202ENST00000357207 4435 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
TRIM39Q9HCM9 AC007541.1-201ENST00000570282 1469 ntBASIC15.6■□□□□ 0.09
TRIM39Q9HCM9 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
TRIM39Q9HCM9 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
TRIM39Q9HCM9 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
TRIM39Q9HCM9 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
TRIM39Q9HCM9 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC15.6■□□□□ 0.09
TRIM39Q9HCM9 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC15.6■□□□□ 0.09
TRIM39Q9HCM9 FNDC1-201ENST00000297267 6552 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
TRIM39Q9HCM9 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
TRIM39Q9HCM9 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
TRIM39Q9HCM9 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
TRIM39Q9HCM9 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
TRIM39Q9HCM9 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
TRIM39Q9HCM9 CALY-202ENST00000368555 783 ntTSL 2 BASIC15.6■□□□□ 0.09
TRIM39Q9HCM9 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
TRIM39Q9HCM9 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC15.6■□□□□ 0.09
TRIM39Q9HCM9 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC15.6■□□□□ 0.09
TRIM39Q9HCM9 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
TRIM39Q9HCM9 AL353779.1-201ENST00000434793 351 ntBASIC15.6■□□□□ 0.09
TRIM39Q9HCM9 AL589987.1-201ENST00000453380 819 ntBASIC15.6■□□□□ 0.09
TRIM39Q9HCM9 CD81-207ENST00000481687 890 ntTSL 2 BASIC15.6■□□□□ 0.09
TRIM39Q9HCM9 SLED1-202ENST00000512051 380 ntBASIC15.6■□□□□ 0.09
TRIM39Q9HCM9 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
TRIM39Q9HCM9 TPRX2P-201ENST00000535362 881 ntBASIC15.6■□□□□ 0.09
TRIM39Q9HCM9 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC15.6■□□□□ 0.09
TRIM39Q9HCM9 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC15.6■□□□□ 0.09
TRIM39Q9HCM9 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC15.6■□□□□ 0.09
TRIM39Q9HCM9 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC15.6■□□□□ 0.09
TRIM39Q9HCM9 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC15.6■□□□□ 0.09
TRIM39Q9HCM9 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC15.6■□□□□ 0.09
TRIM39Q9HCM9 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC15.6■□□□□ 0.09
TRIM39Q9HCM9 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC15.6■□□□□ 0.09
TRIM39Q9HCM9 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
TRIM39Q9HCM9 WASHC2C-202ENST00000359860 4471 ntAPPRIS ALT2 TSL 5 BASIC15.6■□□□□ 0.09
TRIM39Q9HCM9 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC15.6■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 38.4 ms