Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 SLC25A38-201ENST00000273158 2123 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
PCDH9Q9HC56 MSI2-201ENST00000284073 6364 ntAPPRIS P4 TSL 1 (best) BASIC16.24■□□□□ 0.19
PCDH9Q9HC56 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC16.24■□□□□ 0.19
PCDH9Q9HC56 MEOX1-202ENST00000329168 2129 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
PCDH9Q9HC56 NAALADL1-203ENST00000356632 2118 ntTSL 5 BASIC16.24■□□□□ 0.19
PCDH9Q9HC56 STRN-202ENST00000379213 2254 ntTSL 5 BASIC16.24■□□□□ 0.19
PCDH9Q9HC56 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC16.24■□□□□ 0.19
PCDH9Q9HC56 TRIM72-201ENST00000322122 8500 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
PCDH9Q9HC56 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
PCDH9Q9HC56 FAM208A-201ENST00000355628 5239 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
PCDH9Q9HC56 BLMH-201ENST00000261714 2365 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
PCDH9Q9HC56 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC16.23■□□□□ 0.19
PCDH9Q9HC56 MEGF10-202ENST00000418761 2238 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
PCDH9Q9HC56 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
PCDH9Q9HC56 TRAPPC11-202ENST00000357207 4435 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
PCDH9Q9HC56 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
PCDH9Q9HC56 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
PCDH9Q9HC56 AC067930.6-201ENST00000623257 4947 ntBASIC16.23■□□□□ 0.19
PCDH9Q9HC56 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC16.23■□□□□ 0.19
PCDH9Q9HC56 ELMOD1-201ENST00000265840 2852 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
PCDH9Q9HC56 TAS1R1-201ENST00000333172 2892 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
PCDH9Q9HC56 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
PCDH9Q9HC56 SSFA2-205ENST00000431877 5150 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
PCDH9Q9HC56 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
PCDH9Q9HC56 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC16.23■□□□□ 0.19
PCDH9Q9HC56 COMP-203ENST00000542601 2707 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
PCDH9Q9HC56 FYCO1-205ENST00000535325 8578 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
PCDH9Q9HC56 GSN-215ENST00000545652 2428 ntTSL 2 BASIC16.23■□□□□ 0.19
PCDH9Q9HC56 AC004922.1-201ENST00000638617 2430 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
PCDH9Q9HC56 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
PCDH9Q9HC56 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC16.23■□□□□ 0.19
PCDH9Q9HC56 RBM39-205ENST00000397370 612 ntTSL 2 BASIC16.23■□□□□ 0.19
PCDH9Q9HC56 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC16.23■□□□□ 0.19
PCDH9Q9HC56 AC136604.1-201ENST00000418535 575 ntBASIC16.23■□□□□ 0.19
PCDH9Q9HC56 MTND6P24-201ENST00000440466 518 ntBASIC16.23■□□□□ 0.19
PCDH9Q9HC56 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC16.23■□□□□ 0.19
PCDH9Q9HC56 PPP6R2P1-201ENST00000450880 1275 ntBASIC16.23■□□□□ 0.19
PCDH9Q9HC56 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC16.23■□□□□ 0.19
PCDH9Q9HC56 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC16.23■□□□□ 0.19
PCDH9Q9HC56 HYAL2-208ENST00000447092 4054 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
PCDH9Q9HC56 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
PCDH9Q9HC56 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
PCDH9Q9HC56 LRCH1-202ENST00000389797 3314 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
PCDH9Q9HC56 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC16.23■□□□□ 0.19
PCDH9Q9HC56 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC16.23■□□□□ 0.19
PCDH9Q9HC56 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
PCDH9Q9HC56 SYNRG-223ENST00000616179 4050 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
PCDH9Q9HC56 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
PCDH9Q9HC56 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC16.22■□□□□ 0.19
PCDH9Q9HC56 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
PCDH9Q9HC56 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
PCDH9Q9HC56 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
PCDH9Q9HC56 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC16.22■□□□□ 0.19
PCDH9Q9HC56 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC16.22■□□□□ 0.19
PCDH9Q9HC56 POM121C-206ENST00000607367 3690 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
PCDH9Q9HC56 FABP1-202ENST00000393750 1839 ntTSL 2 BASIC16.22■□□□□ 0.19
PCDH9Q9HC56 CFLAR-204ENST00000341582 2056 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
PCDH9Q9HC56 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
PCDH9Q9HC56 HNRNPU-204ENST00000440865 3207 ntTSL 2 BASIC16.22■□□□□ 0.19
PCDH9Q9HC56 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
PCDH9Q9HC56 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
PCDH9Q9HC56 C14orf180-203ENST00000557649 2551 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
PCDH9Q9HC56 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
PCDH9Q9HC56 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
PCDH9Q9HC56 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
PCDH9Q9HC56 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
PCDH9Q9HC56 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC16.22■□□□□ 0.19
PCDH9Q9HC56 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC16.22■□□□□ 0.19
PCDH9Q9HC56 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
PCDH9Q9HC56 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC16.22■□□□□ 0.19
PCDH9Q9HC56 FAM86GP-201ENST00000448322 971 ntBASIC16.22■□□□□ 0.19
PCDH9Q9HC56 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
PCDH9Q9HC56 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
PCDH9Q9HC56 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC16.22■□□□□ 0.19
PCDH9Q9HC56 RPL28-205ENST00000558131 444 ntTSL 5 BASIC16.22■□□□□ 0.19
PCDH9Q9HC56 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC16.22■□□□□ 0.19
PCDH9Q9HC56 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC16.22■□□□□ 0.19
PCDH9Q9HC56 IFT52-201ENST00000373030 1757 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
PCDH9Q9HC56 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
PCDH9Q9HC56 EPOP-201ENST00000621654 3719 ntAPPRIS P1 BASIC16.22■□□□□ 0.19
PCDH9Q9HC56 PCYOX1-201ENST00000264441 2959 ntTSL 5 BASIC16.22■□□□□ 0.19
PCDH9Q9HC56 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
PCDH9Q9HC56 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
PCDH9Q9HC56 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
PCDH9Q9HC56 PNPLA3-203ENST00000423180 2222 ntTSL 2 BASIC16.22■□□□□ 0.19
PCDH9Q9HC56 AC023024.2-201ENST00000623561 1993 ntBASIC16.22■□□□□ 0.19
PCDH9Q9HC56 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
PCDH9Q9HC56 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC16.22■□□□□ 0.19
PCDH9Q9HC56 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
PCDH9Q9HC56 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
PCDH9Q9HC56 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
PCDH9Q9HC56 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
PCDH9Q9HC56 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
PCDH9Q9HC56 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
PCDH9Q9HC56 GNE-202ENST00000396594 5298 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
PCDH9Q9HC56 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
PCDH9Q9HC56 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
PCDH9Q9HC56 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
PCDH9Q9HC56 OTUD7A-201ENST00000307050 10770 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
PCDH9Q9HC56 MARS-233ENST00000628866 2583 ntTSL 5 BASIC16.21■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 49.5 ms