Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 AP003096.1-203ENST00000564469 563 ntTSL 3 BASIC15.14■□□□□ 0.01
COL28A1Q2UY09 AC092337.1-201ENST00000568699 1129 ntBASIC15.14■□□□□ 0.01
COL28A1Q2UY09 MIR5572-201ENST00000583188 137 ntBASIC15.14■□□□□ 0.01
COL28A1Q2UY09 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
COL28A1Q2UY09 SYNE3-203ENST00000554873 2826 ntTSL 5 BASIC15.14■□□□□ 0.01
COL28A1Q2UY09 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC15.14■□□□□ 0.01
COL28A1Q2UY09 PGBD5-201ENST00000391860 10961 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
COL28A1Q2UY09 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
COL28A1Q2UY09 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
COL28A1Q2UY09 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC15.14■□□□□ 0.01
COL28A1Q2UY09 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
COL28A1Q2UY09 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
COL28A1Q2UY09 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC15.13■□□□□ 0.01
COL28A1Q2UY09 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC15.13■□□□□ 0.01
COL28A1Q2UY09 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC15.13■□□□□ 0.01
COL28A1Q2UY09 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
COL28A1Q2UY09 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
COL28A1Q2UY09 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC15.13■□□□□ 0.01
COL28A1Q2UY09 NTRK2-205ENST00000376208 8178 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
COL28A1Q2UY09 SHISA9-203ENST00000558583 6724 ntAPPRIS P4 TSL 5 BASIC15.13■□□□□ 0.01
COL28A1Q2UY09 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
COL28A1Q2UY09 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
COL28A1Q2UY09 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
COL28A1Q2UY09 RAB4B-201ENST00000357052 1133 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
COL28A1Q2UY09 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC15.13■□□□□ 0.01
COL28A1Q2UY09 IGHV3-21-201ENST00000390607 430 ntAPPRIS P1 BASIC15.13■□□□□ 0.01
COL28A1Q2UY09 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC15.13■□□□□ 0.01
COL28A1Q2UY09 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
COL28A1Q2UY09 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
COL28A1Q2UY09 RAD18-204ENST00000418463 563 ntTSL 4 BASIC15.13■□□□□ 0.01
COL28A1Q2UY09 RAD18-205ENST00000421052 582 ntTSL 3 BASIC15.13■□□□□ 0.01
COL28A1Q2UY09 UPF3AP2-201ENST00000457924 1132 ntBASIC15.13■□□□□ 0.01
COL28A1Q2UY09 PGAP2-224ENST00000490830 810 ntTSL 3 BASIC15.13■□□□□ 0.01
COL28A1Q2UY09 AC008011.2-201ENST00000538113 792 ntTSL 3 BASIC15.13■□□□□ 0.01
COL28A1Q2UY09 AP000812.2-201ENST00000538934 718 ntBASIC15.13■□□□□ 0.01
COL28A1Q2UY09 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC15.13■□□□□ 0.01
COL28A1Q2UY09 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC15.13■□□□□ 0.01
COL28A1Q2UY09 AL031600.1-201ENST00000563610 570 ntTSL 4 BASIC15.13■□□□□ 0.01
COL28A1Q2UY09 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC15.13■□□□□ 0.01
COL28A1Q2UY09 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC15.13■□□□□ 0.01
COL28A1Q2UY09 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC15.13■□□□□ 0.01
COL28A1Q2UY09 ITPKB-201ENST00000272117 5822 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
COL28A1Q2UY09 SH3BP2-207ENST00000503393 9158 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
COL28A1Q2UY09 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC15.13■□□□□ 0.01
COL28A1Q2UY09 IMPA1-201ENST00000256108 2690 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
COL28A1Q2UY09 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC15.13■□□□□ 0.01
COL28A1Q2UY09 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC15.13■□□□□ 0.01
COL28A1Q2UY09 ACTN2-207ENST00000546208 5103 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
COL28A1Q2UY09 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
COL28A1Q2UY09 ALOX12P2-203ENST00000570921 1945 ntBASIC15.13■□□□□ 0.01
COL28A1Q2UY09 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC15.13■□□□□ 0.01
COL28A1Q2UY09 AC099063.4-201ENST00000641099 1602 ntBASIC15.13■□□□□ 0.01
COL28A1Q2UY09 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
COL28A1Q2UY09 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC15.13■□□□□ 0.01
COL28A1Q2UY09 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC15.13■□□□□ 0.01
COL28A1Q2UY09 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
COL28A1Q2UY09 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC15.13■□□□□ 0.01
COL28A1Q2UY09 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
COL28A1Q2UY09 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
COL28A1Q2UY09 GLG1-202ENST00000422840 4748 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
COL28A1Q2UY09 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC15.12■□□□□ 0.01
COL28A1Q2UY09 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC15.12■□□□□ 0.01
COL28A1Q2UY09 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
COL28A1Q2UY09 HCFC1-201ENST00000310441 8869 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
COL28A1Q2UY09 MDFIC-202ENST00000393486 4393 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
COL28A1Q2UY09 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
COL28A1Q2UY09 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
COL28A1Q2UY09 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
COL28A1Q2UY09 CXorf40A-209ENST00000441248 2411 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
COL28A1Q2UY09 WT1-209ENST00000530998 2421 ntTSL 2 BASIC15.12■□□□□ 0.01
COL28A1Q2UY09 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
COL28A1Q2UY09 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC15.12■□□□□ 0.01
COL28A1Q2UY09 CPEB2-201ENST00000259997 5612 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
COL28A1Q2UY09 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC15.12■□□□□ 0.01
COL28A1Q2UY09 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
COL28A1Q2UY09 MCF2L2-201ENST00000328913 4980 ntAPPRIS P2 TSL 5 BASIC15.12■□□□□ 0.01
COL28A1Q2UY09 ARID4B-202ENST00000349213 5811 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
COL28A1Q2UY09 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC15.12■□□□□ 0.01
COL28A1Q2UY09 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
COL28A1Q2UY09 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
COL28A1Q2UY09 NPPC-201ENST00000295440 500 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
COL28A1Q2UY09 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
COL28A1Q2UY09 RPS2P36-201ENST00000456516 831 ntBASIC15.12■□□□□ 0.01
COL28A1Q2UY09 AC009403.1-204ENST00000469539 597 ntTSL 2 BASIC15.12■□□□□ 0.01
COL28A1Q2UY09 SPATA24-205ENST00000509959 641 ntTSL 5 BASIC15.12■□□□□ 0.01
COL28A1Q2UY09 OVOL1-AS1-202ENST00000532454 494 ntTSL 2 BASIC15.12■□□□□ 0.01
COL28A1Q2UY09 RERG-205ENST00000537647 935 ntTSL 2 BASIC15.12■□□□□ 0.01
COL28A1Q2UY09 HNRNPUP1-201ENST00000554987 333 ntBASIC15.12■□□□□ 0.01
COL28A1Q2UY09 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC15.12■□□□□ 0.01
COL28A1Q2UY09 SCGB1C2-201ENST00000595228 478 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
COL28A1Q2UY09 LINC02351-201ENST00000614728 289 ntTSL 2 BASIC15.12■□□□□ 0.01
COL28A1Q2UY09 ANXA2R-202ENST00000616064 1265 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
COL28A1Q2UY09 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
COL28A1Q2UY09 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC15.12■□□□□ 0.01
COL28A1Q2UY09 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
COL28A1Q2UY09 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
COL28A1Q2UY09 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC15.12■□□□□ 0.01
COL28A1Q2UY09 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC15.12■□□□□ 0.01
COL28A1Q2UY09 DYSF-207ENST00000409762 6727 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
COL28A1Q2UY09 DYSF-211ENST00000429174 6739 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 34.4 ms