Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 ILF3-201ENST00000250241 3035 ntTSL 1 (best) BASIC9.75□□□□□ -0.85
LINC00643Q86TS7 LHCGR-201ENST00000294954 3044 ntAPPRIS P2 TSL 1 (best) BASIC9.75□□□□□ -0.85
LINC00643Q86TS7 PIK3R6-204ENST00000619866 3041 ntAPPRIS P1 TSL 5 BASIC9.75□□□□□ -0.85
LINC00643Q86TS7 CCDC88C-204ENST00000389857 7474 ntAPPRIS P1 TSL 5 BASIC9.75□□□□□ -0.85
LINC00643Q86TS7 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC9.75□□□□□ -0.85
LINC00643Q86TS7 AC107375.1-201ENST00000564464 2231 ntBASIC9.75□□□□□ -0.85
LINC00643Q86TS7 LRRC17-201ENST00000249377 2002 ntTSL 1 (best) BASIC9.75□□□□□ -0.85
LINC00643Q86TS7 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC9.75□□□□□ -0.85
LINC00643Q86TS7 NME1-209ENST00000511355 1645 ntTSL 5 BASIC9.75□□□□□ -0.85
LINC00643Q86TS7 KRT8P39-201ENST00000396270 1433 ntBASIC9.75□□□□□ -0.85
LINC00643Q86TS7 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC9.75□□□□□ -0.85
LINC00643Q86TS7 GATAD2A-201ENST00000358713 5510 ntAPPRIS P3 TSL 1 (best) BASIC9.75□□□□□ -0.85
LINC00643Q86TS7 COL6A1-207ENST00000612273 3251 ntAPPRIS ALT2 TSL 5 BASIC9.75□□□□□ -0.85
LINC00643Q86TS7 PNPLA6-204ENST00000545201 4502 ntTSL 2 BASIC9.75□□□□□ -0.85
LINC00643Q86TS7 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC9.75□□□□□ -0.85
LINC00643Q86TS7 TFAP2A-213ENST00000482890 2071 ntAPPRIS P3 TSL 5 BASIC9.75□□□□□ -0.85
LINC00643Q86TS7 AL022323.5-201ENST00000624101 2059 ntBASIC9.75□□□□□ -0.85
LINC00643Q86TS7 RBM10-202ENST00000345781 3108 ntAPPRIS ALT2 TSL 2 BASIC9.75□□□□□ -0.85
LINC00643Q86TS7 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC9.75□□□□□ -0.85
LINC00643Q86TS7 NCOA7-203ENST00000392477 6457 ntAPPRIS P3 TSL 1 (best) BASIC9.75□□□□□ -0.85
LINC00643Q86TS7 SIGLEC9-201ENST00000250360 1690 ntAPPRIS P3 TSL 1 (best) BASIC9.75□□□□□ -0.85
LINC00643Q86TS7 FARS2-202ENST00000324331 1692 ntAPPRIS P1 TSL 1 (best) BASIC9.75□□□□□ -0.85
LINC00643Q86TS7 GPR84-201ENST00000267015 1497 ntAPPRIS P1 TSL 1 (best) BASIC9.75□□□□□ -0.85
LINC00643Q86TS7 ITGA5-201ENST00000293379 4444 ntAPPRIS P1 TSL 1 (best) BASIC9.75□□□□□ -0.85
LINC00643Q86TS7 AP002761.4-201ENST00000565433 3361 ntBASIC9.75□□□□□ -0.85
LINC00643Q86TS7 CSF1-201ENST00000329608 4210 ntAPPRIS P1 TSL 1 (best) BASIC9.75□□□□□ -0.85
LINC00643Q86TS7 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC9.75□□□□□ -0.85
LINC00643Q86TS7 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC9.75□□□□□ -0.85
LINC00643Q86TS7 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC9.75□□□□□ -0.85
LINC00643Q86TS7 TPM3-206ENST00000330188 2108 ntTSL 1 (best) BASIC9.75□□□□□ -0.85
LINC00643Q86TS7 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC9.75□□□□□ -0.85
LINC00643Q86TS7 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC9.75□□□□□ -0.85
LINC00643Q86TS7 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC9.75□□□□□ -0.85
LINC00643Q86TS7 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC9.75□□□□□ -0.85
LINC00643Q86TS7 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC9.75□□□□□ -0.85
LINC00643Q86TS7 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC9.75□□□□□ -0.85
LINC00643Q86TS7 AL512625.2-201ENST00000417533 625 ntBASIC9.75□□□□□ -0.85
LINC00643Q86TS7 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC9.75□□□□□ -0.85
LINC00643Q86TS7 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC9.75□□□□□ -0.85
LINC00643Q86TS7 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC9.75□□□□□ -0.85
LINC00643Q86TS7 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC9.75□□□□□ -0.85
LINC00643Q86TS7 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC9.75□□□□□ -0.85
LINC00643Q86TS7 GRAMD4P4-201ENST00000613563 1115 ntBASIC9.75□□□□□ -0.85
LINC00643Q86TS7 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC9.75□□□□□ -0.85
LINC00643Q86TS7 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC9.75□□□□□ -0.85
LINC00643Q86TS7 NUTM2E-202ENST00000602967 3623 ntAPPRIS ALT2 TSL 5 BASIC9.75□□□□□ -0.85
LINC00643Q86TS7 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC9.75□□□□□ -0.85
LINC00643Q86TS7 FZD7-201ENST00000286201 3859 ntAPPRIS P1 BASIC9.75□□□□□ -0.85
LINC00643Q86TS7 DNMT3L-201ENST00000270172 1706 ntAPPRIS P3 TSL 1 (best) BASIC9.75□□□□□ -0.85
LINC00643Q86TS7 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC9.75□□□□□ -0.85
LINC00643Q86TS7 TBC1D24-201ENST00000293970 4340 ntAPPRIS ALT1 TSL 1 (best) BASIC9.75□□□□□ -0.85
LINC00643Q86TS7 VDR-201ENST00000229022 4773 ntAPPRIS P1 TSL 5 BASIC9.75□□□□□ -0.85
LINC00643Q86TS7 ILF3-AS1-201ENST00000591501 1983 ntBASIC9.75□□□□□ -0.85
LINC00643Q86TS7 LINC01114-203ENST00000425879 2434 ntTSL 2 BASIC9.75□□□□□ -0.85
LINC00643Q86TS7 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC9.75□□□□□ -0.85
LINC00643Q86TS7 METTL13-203ENST00000367737 2865 ntTSL 1 (best) BASIC9.75□□□□□ -0.85
LINC00643Q86TS7 PVR-205ENST00000425690 3325 ntAPPRIS P3 TSL 1 (best) BASIC9.75□□□□□ -0.85
LINC00643Q86TS7 SNX33P1-201ENST00000592116 1762 ntBASIC9.75□□□□□ -0.85
LINC00643Q86TS7 ICOSLG-203ENST00000400379 4246 ntAPPRIS ALT2 TSL 1 (best) BASIC9.75□□□□□ -0.85
LINC00643Q86TS7 NFE2L2-202ENST00000397063 2651 ntTSL 1 (best) BASIC9.75□□□□□ -0.85
LINC00643Q86TS7 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC9.75□□□□□ -0.85
LINC00643Q86TS7 MPP6-202ENST00000396475 3848 ntAPPRIS P1 TSL 1 (best) BASIC9.75□□□□□ -0.85
LINC00643Q86TS7 AC099521.2-201ENST00000619354 2036 ntBASIC9.75□□□□□ -0.85
LINC00643Q86TS7 TYK2-210ENST00000529370 3176 ntTSL 2 BASIC9.75□□□□□ -0.85
LINC00643Q86TS7 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC9.75□□□□□ -0.85
LINC00643Q86TS7 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC9.75□□□□□ -0.85
LINC00643Q86TS7 PEX1-201ENST00000248633 4385 ntAPPRIS P1 TSL 1 (best) BASIC9.75□□□□□ -0.85
LINC00643Q86TS7 PCDHGA5-201ENST00000518069 4602 ntTSL 1 (best) BASIC9.75□□□□□ -0.85
LINC00643Q86TS7 AC016738.1-201ENST00000452364 3485 ntTSL 1 (best) BASIC9.75□□□□□ -0.85
LINC00643Q86TS7 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC9.74□□□□□ -0.85
LINC00643Q86TS7 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC9.74□□□□□ -0.85
LINC00643Q86TS7 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC9.74□□□□□ -0.85
LINC00643Q86TS7 STK33-217ENST00000534493 1895 ntTSL 2 BASIC9.74□□□□□ -0.85
LINC00643Q86TS7 SLC1A2-208ENST00000606205 1890 ntTSL 2 BASIC9.74□□□□□ -0.85
LINC00643Q86TS7 GOLGA2P5-201ENST00000266746 2395 ntBASIC9.74□□□□□ -0.85
LINC00643Q86TS7 ZNF740-201ENST00000416904 8578 ntAPPRIS P1 TSL 1 (best) BASIC9.74□□□□□ -0.85
LINC00643Q86TS7 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC9.74□□□□□ -0.85
LINC00643Q86TS7 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC9.74□□□□□ -0.85
LINC00643Q86TS7 GRIPAP1-215ENST00000622599 2881 ntTSL 5 BASIC9.74□□□□□ -0.85
LINC00643Q86TS7 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC9.74□□□□□ -0.85
LINC00643Q86TS7 ZFAND3-201ENST00000287218 3366 ntAPPRIS P1 TSL 1 (best) BASIC9.74□□□□□ -0.85
LINC00643Q86TS7 AL805961.2-201ENST00000642139 4817 ntBASIC9.74□□□□□ -0.85
LINC00643Q86TS7 PFKP-203ENST00000381125 2654 ntAPPRIS P1 TSL 1 (best) BASIC9.74□□□□□ -0.85
LINC00643Q86TS7 FAM155A-201ENST00000375915 8503 ntAPPRIS P1 TSL 1 (best) BASIC9.74□□□□□ -0.85
LINC00643Q86TS7 TCF23-201ENST00000296096 4882 ntAPPRIS P1 TSL 1 (best) BASIC9.74□□□□□ -0.85
LINC00643Q86TS7 ADAM33-207ENST00000619289 3195 ntTSL 1 (best) BASIC9.74□□□□□ -0.85
LINC00643Q86TS7 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC9.74□□□□□ -0.85
LINC00643Q86TS7 ESYT3-202ENST00000389567 4407 ntAPPRIS P1 TSL 1 (best) BASIC9.74□□□□□ -0.85
LINC00643Q86TS7 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC9.74□□□□□ -0.85
LINC00643Q86TS7 NBPF21P-201ENST00000425093 1451 ntBASIC9.74□□□□□ -0.85
LINC00643Q86TS7 LGALS8-AS1-201ENST00000487567 1457 ntBASIC9.74□□□□□ -0.85
LINC00643Q86TS7 SPTBN2-209ENST00000533211 8128 ntAPPRIS P1 TSL 5 BASIC9.74□□□□□ -0.85
LINC00643Q86TS7 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC9.74□□□□□ -0.85
LINC00643Q86TS7 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC9.74□□□□□ -0.85
LINC00643Q86TS7 CASC2-202ENST00000426021 3232 ntTSL 1 (best) BASIC9.74□□□□□ -0.85
LINC00643Q86TS7 ATP2B2-210ENST00000638646 3465 ntTSL 5 BASIC9.74□□□□□ -0.85
LINC00643Q86TS7 MYT1-201ENST00000328439 5535 ntAPPRIS P2 TSL 1 (best) BASIC9.74□□□□□ -0.85
LINC00643Q86TS7 AC102953.2-201ENST00000609755 3026 ntBASIC9.74□□□□□ -0.85
LINC00643Q86TS7 SH2D7-201ENST00000328828 2750 ntAPPRIS P1 TSL 5 BASIC9.74□□□□□ -0.85
LINC00643Q86TS7 CDCA7-202ENST00000347703 2500 ntAPPRIS P1 TSL 1 (best) BASIC9.74□□□□□ -0.85
Retrieved 100 of 98,524 protein–RNA pairs in 64.8 ms