RNA–Protein interactions for RNA: ENST00000229022.7

VDR-201, Transcript of vitamin D receptor, humanhuman

APPRIS P1 TSL 5 BASIC

Gene VDR, Length 4,773 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VDR-201ENST00000229022 DCAF8L2P0C7V8 631 aa22.39■■□□□ 1.17
VDR-201ENST00000229022 NISCHQ9Y2I1 1504 aa22.04■■□□□ 1.12
VDR-201ENST00000229022 SUPT5HO00267 1087 aaKnown RBP21.44■■□□□ 1.02
VDR-201ENST00000229022 SHROOM4Q9ULL8 1493 aa21■□□□□ 0.95
VDR-201ENST00000229022 APLP2Q06481 763 aa20.45■□□□□ 0.86
VDR-201ENST00000229022 PELP1Q8IZL8 1130 aaKnown RBP20.41■□□□□ 0.86
VDR-201ENST00000229022 EHMT2Q96KQ7 1210 aa20.4■□□□□ 0.86
VDR-201ENST00000229022 FAM9AQ8IZU1 332 aaPredicted RBP20.13■□□□□ 0.81
VDR-201ENST00000229022 PCGF6Q9BYE7 350 aa20.07■□□□□ 0.8
VDR-201ENST00000229022 ZEB1P37275 1124 aaPredicted RBP20.03■□□□□ 0.8
VDR-201ENST00000229022 TRIM41Q8WV44 630 aa20■□□□□ 0.79
VDR-201ENST00000229022 CENPBP07199 599 aaPredicted RBP19.79■□□□□ 0.76
VDR-201ENST00000229022 TTBK1Q5TCY1 1321 aaPredicted RBP19.76■□□□□ 0.75
VDR-201ENST00000229022 CCER1Q8TC90 406 aaPredicted RBP19.74■□□□□ 0.75
VDR-201ENST00000229022 UBTFP17480 764 aaKnown RBP19.68■□□□□ 0.74
VDR-201ENST00000229022 RANGAP1P46060 587 aaPredicted RBP19.59■□□□□ 0.73
VDR-201ENST00000229022 ATP1B4Q9UN42 357 aaPredicted RBP19.5■□□□□ 0.71
VDR-201ENST00000229022 TRIM26Q12899 539 aaPredicted RBP19.44■□□□□ 0.7
VDR-201ENST00000229022 ERICH6Q7L0X2 663 aa19.33■□□□□ 0.69
VDR-201ENST00000229022 NEFLP07196 543 aa19.29■□□□□ 0.68
VDR-201ENST00000229022 CHIC1Q5VXU3 224 aa19.27■□□□□ 0.68
VDR-201ENST00000229022 HRCP23327 699 aa19.21■□□□□ 0.67
VDR-201ENST00000229022 PPARGC1BQ86YN6 1023 aaKnown RBP19.13■□□□□ 0.65
VDR-201ENST00000229022 MYT1Q01538 1121 aa19.1■□□□□ 0.65
VDR-201ENST00000229022 YTHDC1Q96MU7 727 aaKnown RBP19.08■□□□□ 0.64
VDR-201ENST00000229022 LOC105371045A0A1W2PR82 267 aa19.06■□□□□ 0.64
VDR-201ENST00000229022 ITGAEP38570 1179 aa18.9■□□□□ 0.62
VDR-201ENST00000229022 HNRNPUL2Q1KMD3 747 aaKnown RBP18.88■□□□□ 0.61
VDR-201ENST00000229022 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.86■□□□□ 0.61
VDR-201ENST00000229022 MYT1LQ9UL68 1186 aa18.7■□□□□ 0.58
VDR-201ENST00000229022 ABCC9O60706 1549 aa18.67■□□□□ 0.58
VDR-201ENST00000229022 POLR3GLQ9BT43 218 aa18.66■□□□□ 0.58
VDR-201ENST00000229022 DIEXFQ68CQ4 756 aaKnown RBP18.65■□□□□ 0.58
VDR-201ENST00000229022 DAXXQ9UER7 740 aaPredicted RBP18.63■□□□□ 0.57
VDR-201ENST00000229022 PABPN1Q86U42 306 aaKnown RBP eCLIP18.55■□□□□ 0.56
VDR-201ENST00000229022 FAM50AQ14320 339 aaKnown RBP18.53■□□□□ 0.56
VDR-201ENST00000229022 TRIM52Q96A61 297 aa18.41■□□□□ 0.54
VDR-201ENST00000229022 CSRNP3Q8WYN3 585 aa18.39■□□□□ 0.54
VDR-201ENST00000229022 CNGB1Q14028 1251 aaPredicted RBP18.36■□□□□ 0.53
VDR-201ENST00000229022 NEUROD1Q13562 356 aa18.32■□□□□ 0.52
VDR-201ENST00000229022 ANP32CO43423 234 aa18.3■□□□□ 0.52
VDR-201ENST00000229022 ZNF316A6NFI3 1004 aaPredicted RBP18.3■□□□□ 0.52
VDR-201ENST00000229022 SLC4A1APQ9BWU0 796 aaKnown RBP18.27■□□□□ 0.52
VDR-201ENST00000229022 ZCCHC6Q5VYS8 1495 aaKnown RBP18.26■□□□□ 0.51
VDR-201ENST00000229022 RTL5Q5HYW3 569 aaPredicted RBP18.23■□□□□ 0.51
VDR-201ENST00000229022 CLSPNQ9HAW4 1339 aa18.22■□□□□ 0.51
VDR-201ENST00000229022 GTF3C3Q9Y5Q9 886 aa18.16■□□□□ 0.5
VDR-201ENST00000229022 DCAF1Q9Y4B6 1507 aa18.13■□□□□ 0.49
VDR-201ENST00000229022 CDK11AQ9UQ88 783 aaPredicted RBP18.11■□□□□ 0.49
VDR-201ENST00000229022 ZNF326Q5BKZ1 582 aaKnown RBP18.1■□□□□ 0.49
VDR-201ENST00000229022 SCRIBQ14160 1630 aa18.09■□□□□ 0.49
VDR-201ENST00000229022 FBLN2P98095 1184 aa18.09■□□□□ 0.49
VDR-201ENST00000229022 P3H3Q8IVL6 736 aa18.03■□□□□ 0.48
VDR-201ENST00000229022 ACIN1Q9UKV3 1341 aaKnown RBP18.03■□□□□ 0.48
VDR-201ENST00000229022 CCDC180Q9P1Z9 1646 aa18.02■□□□□ 0.48
VDR-201ENST00000229022 BCANQ96GW7 911 aa17.98■□□□□ 0.47
VDR-201ENST00000229022 ZBTB47Q9UFB7 747 aaPredicted RBP17.95■□□□□ 0.46
VDR-201ENST00000229022 TONSLQ96HA7 1378 aa17.92■□□□□ 0.46
VDR-201ENST00000229022 NEFMP07197 916 aa17.91■□□□□ 0.46
VDR-201ENST00000229022 ZNF777Q9ULD5 760 aaPredicted RBP17.87■□□□□ 0.45
VDR-201ENST00000229022 CANXP27824 592 aaKnown RBP17.85■□□□□ 0.45
VDR-201ENST00000229022 ARID3CA6NKF2 412 aa17.84■□□□□ 0.45
VDR-201ENST00000229022 EEA1Q15075 1411 aa17.82■□□□□ 0.44
VDR-201ENST00000229022 ANP32AP39687 249 aaKnown RBP17.77■□□□□ 0.44
VDR-201ENST00000229022 CLIP1P30622 1438 aa17.73■□□□□ 0.43
VDR-201ENST00000229022 DDX10Q13206 875 aaKnown RBP17.7■□□□□ 0.42
VDR-201ENST00000229022 RSF1Q96T23 1441 aaPredicted RBP17.69■□□□□ 0.42
VDR-201ENST00000229022 MTUS2Q5JR59 1369 aa17.69■□□□□ 0.42
VDR-201ENST00000229022 HNRNPUQ00839 825 aaKnown RBP eCLIP17.68■□□□□ 0.42
VDR-201ENST00000229022 RB1CC1Q8TDY2 1594 aa17.68■□□□□ 0.42
VDR-201ENST00000229022 TSPY4P0CV99 314 aa17.66■□□□□ 0.42
VDR-201ENST00000229022 TSPY10P0CW01 314 aa17.66■□□□□ 0.42
VDR-201ENST00000229022 FKBP8Q14318 412 aa17.66■□□□□ 0.42
VDR-201ENST00000229022 NPM1P06748 294 aaKnown RBP eCLIP17.64■□□□□ 0.41
VDR-201ENST00000229022 GOLGA3Q08378 1498 aa17.63■□□□□ 0.41
VDR-201ENST00000229022 ESF1Q9H501 851 aaKnown RBP17.63■□□□□ 0.41
VDR-201ENST00000229022 TMC1Q8TDI8 760 aa17.59■□□□□ 0.41
VDR-201ENST00000229022 NACADO15069 1562 aa17.59■□□□□ 0.41
VDR-201ENST00000229022 CHIC2Q9UKJ5 165 aa17.59■□□□□ 0.41
VDR-201ENST00000229022 SLC24A1O60721 1099 aa17.58■□□□□ 0.4
VDR-201ENST00000229022 FAM9BQ8IZU0 186 aa17.58■□□□□ 0.4
VDR-201ENST00000229022 CEP162Q5TB80 1403 aa17.57■□□□□ 0.4
VDR-201ENST00000229022 CHGAP10645 457 aaKnown RBP17.55■□□□□ 0.4
VDR-201ENST00000229022 WRNQ14191 1432 aaPredicted RBP eCLIP17.55■□□□□ 0.4
VDR-201ENST00000229022 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.55■□□□□ 0.4
VDR-201ENST00000229022 STAG3Q9UJ98 1225 aa17.54■□□□□ 0.4
VDR-201ENST00000229022 UPF2Q9HAU5 1272 aaKnown RBP17.54■□□□□ 0.4
VDR-201ENST00000229022 TNIKQ9UKE5 1360 aa17.53■□□□□ 0.4
VDR-201ENST00000229022 EIF4G2P78344 907 aaKnown RBP eCLIP17.52■□□□□ 0.4
VDR-201ENST00000229022 CHMP7Q8WUX9 453 aaPredicted RBP17.52■□□□□ 0.39
VDR-201ENST00000229022 MRS2Q9HD23 443 aa17.51■□□□□ 0.39
VDR-201ENST00000229022 NPM2Q86SE8 214 aaKnown RBP17.49■□□□□ 0.39
VDR-201ENST00000229022 CCDC136Q96JN2 1154 aa17.49■□□□□ 0.39
VDR-201ENST00000229022 CEP164Q9UPV0 1460 aa17.48■□□□□ 0.39
VDR-201ENST00000229022 KIF27Q86VH2 1401 aa17.48■□□□□ 0.39
VDR-201ENST00000229022 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.47■□□□□ 0.39
VDR-201ENST00000229022 WDR43Q15061 677 aaKnown RBP eCLIP17.46■□□□□ 0.39
VDR-201ENST00000229022 MIER1Q8N108 512 aa17.46■□□□□ 0.39
VDR-201ENST00000229022 BCL11AQ9H165 835 aa17.46■□□□□ 0.39
VDR-201ENST00000229022 MYO15BQ96JP2 1530 aa17.46■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms