RNA–Protein interactions for RNA: ENST00000612273.1

COL6A1-207, Transcript of collagen type VI alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL6A1, Length 3,251 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-207ENST00000612273 NISCHQ9Y2I1 1504 aa27.89■■■□□ 2.06
COL6A1-207ENST00000612273 SHROOM4Q9ULL8 1493 aa24.9■■□□□ 1.58
COL6A1-207ENST00000612273 SUPT5HO00267 1087 aaKnown RBP24.56■■□□□ 1.52
COL6A1-207ENST00000612273 DCAF8L2P0C7V8 631 aa24.28■■□□□ 1.48
COL6A1-207ENST00000612273 CHIC1Q5VXU3 224 aa23.55■■□□□ 1.36
COL6A1-207ENST00000612273 ZCCHC6Q5VYS8 1495 aaKnown RBP23.53■■□□□ 1.36
COL6A1-207ENST00000612273 MYO15BQ96JP2 1530 aa23.43■■□□□ 1.34
COL6A1-207ENST00000612273 PCGF6Q9BYE7 350 aa23.41■■□□□ 1.34
COL6A1-207ENST00000612273 LOC105371045A0A1W2PR82 267 aa23.23■■□□□ 1.31
COL6A1-207ENST00000612273 HRCP23327 699 aa23.16■■□□□ 1.3
COL6A1-207ENST00000612273 CCDC180Q9P1Z9 1646 aa23.13■■□□□ 1.29
COL6A1-207ENST00000612273 PPARGC1BQ86YN6 1023 aaKnown RBP23.12■■□□□ 1.29
COL6A1-207ENST00000612273 EHMT2Q96KQ7 1210 aa22.99■■□□□ 1.27
COL6A1-207ENST00000612273 FAM9AQ8IZU1 332 aaPredicted RBP22.84■■□□□ 1.25
COL6A1-207ENST00000612273 TRIM41Q8WV44 630 aa22.6■■□□□ 1.21
COL6A1-207ENST00000612273 TRIM26Q12899 539 aaPredicted RBP22.51■■□□□ 1.19
COL6A1-207ENST00000612273 DCAF1Q9Y4B6 1507 aa22.44■■□□□ 1.18
COL6A1-207ENST00000612273 SCRIBQ14160 1630 aa22.43■■□□□ 1.18
COL6A1-207ENST00000612273 RSF1Q96T23 1441 aaPredicted RBP22.35■■□□□ 1.17
COL6A1-207ENST00000612273 ABCC9O60706 1549 aa22.22■■□□□ 1.15
COL6A1-207ENST00000612273 TTBK1Q5TCY1 1321 aaPredicted RBP22.22■■□□□ 1.15
COL6A1-207ENST00000612273 RB1CC1Q8TDY2 1594 aa22.14■■□□□ 1.13
COL6A1-207ENST00000612273 CECR2Q9BXF3 1484 aa22.08■■□□□ 1.13
COL6A1-207ENST00000612273 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.96■■□□□ 1.11
COL6A1-207ENST00000612273 ZEB1P37275 1124 aaPredicted RBP21.93■■□□□ 1.1
COL6A1-207ENST00000612273 MROH2BQ7Z745 1585 aa21.88■■□□□ 1.09
COL6A1-207ENST00000612273 CCER1Q8TC90 406 aaPredicted RBP21.84■■□□□ 1.09
COL6A1-207ENST00000612273 WIZO95785 1651 aa21.74■■□□□ 1.07
COL6A1-207ENST00000612273 SCAF1Q9H7N4 1312 aaKnown RBP21.64■■□□□ 1.05
COL6A1-207ENST00000612273 UBTFP17480 764 aaKnown RBP21.64■■□□□ 1.05
COL6A1-207ENST00000612273 PABPN1Q86U42 306 aaKnown RBP eCLIP21.62■■□□□ 1.054e-7■■■□□ 14.9
COL6A1-207ENST00000612273 RANGAP1P46060 587 aaPredicted RBP21.61■■□□□ 1.05
COL6A1-207ENST00000612273 NACADO15069 1562 aa21.58■■□□□ 1.04
COL6A1-207ENST00000612273 ABCC8Q09428 1581 aa21.53■■□□□ 1.04
COL6A1-207ENST00000612273 CCDC88BA6NC98 1476 aa21.49■■□□□ 1.03
COL6A1-207ENST00000612273 SOGA1O94964 1423 aa21.45■■□□□ 1.02
COL6A1-207ENST00000612273 DIEXFQ68CQ4 756 aaKnown RBP21.4■■□□□ 1.02
COL6A1-207ENST00000612273 HNRNPUL2Q1KMD3 747 aaKnown RBP21.39■■□□□ 1.02
COL6A1-207ENST00000612273 NEUROD1Q13562 356 aa21.37■■□□□ 1.01
COL6A1-207ENST00000612273 CSRNP3Q8WYN3 585 aa21.37■■□□□ 1.01
COL6A1-207ENST00000612273 RUSC2Q8N2Y8 1516 aa21.35■■□□□ 1.01
COL6A1-207ENST00000612273 BAZ1AQ9NRL2 1556 aaPredicted RBP21.35■■□□□ 1.01
COL6A1-207ENST00000612273 CEP162Q5TB80 1403 aa21.34■■□□□ 1.01
COL6A1-207ENST00000612273 YTHDC1Q96MU7 727 aaKnown RBP21.33■■□□□ 1
COL6A1-207ENST00000612273 ACIN1Q9UKV3 1341 aaKnown RBP21.25■□□□□ 0.99
COL6A1-207ENST00000612273 GTF3C3Q9Y5Q9 886 aa21.23■□□□□ 0.99
COL6A1-207ENST00000612273 TOP2AP11388 1531 aaKnown RBP21.17■□□□□ 0.98
COL6A1-207ENST00000612273 SMARCA2P51531 1590 aa21.14■□□□□ 0.97
COL6A1-207ENST00000612273 TNIKQ9UKE5 1360 aa21.14■□□□□ 0.97
COL6A1-207ENST00000612273 SMARCA4P51532 1647 aa21.13■□□□□ 0.97
COL6A1-207ENST00000612273 EIF4G1Q04637 1599 aaKnown RBP21.12■□□□□ 0.97
COL6A1-207ENST00000612273 CENPBP07199 599 aaPredicted RBP21.12■□□□□ 0.97
COL6A1-207ENST00000612273 APLP2Q06481 763 aa21.12■□□□□ 0.97
COL6A1-207ENST00000612273 ZNF316A6NFI3 1004 aaPredicted RBP21.06■□□□□ 0.96
COL6A1-207ENST00000612273 WRNQ14191 1432 aaPredicted RBP eCLIP21.04■□□□□ 0.96
COL6A1-207ENST00000612273 PELP1Q8IZL8 1130 aaKnown RBP21.01■□□□□ 0.95
COL6A1-207ENST00000612273 GOLGA3Q08378 1498 aa20.98■□□□□ 0.95
COL6A1-207ENST00000612273 MIER1Q8N108 512 aa20.97■□□□□ 0.95
COL6A1-207ENST00000612273 CLIP1P30622 1438 aa20.93■□□□□ 0.94
COL6A1-207ENST00000612273 ITGAEP38570 1179 aa20.9■□□□□ 0.94
COL6A1-207ENST00000612273 EEA1Q15075 1411 aa20.89■□□□□ 0.93
COL6A1-207ENST00000612273 UNC13AQ9UPW8 1703 aa20.85■□□□□ 0.93
COL6A1-207ENST00000612273 RAPGEF2Q9Y4G8 1499 aa20.82■□□□□ 0.92
COL6A1-207ENST00000612273 SYNJ1O43426 1573 aa20.8■□□□□ 0.92
COL6A1-207ENST00000612273 CEP164Q9UPV0 1460 aa20.8■□□□□ 0.92
COL6A1-207ENST00000612273 KANK4Q5T7N3 995 aaPredicted RBP20.74■□□□□ 0.91
COL6A1-207ENST00000612273 BAZ1BQ9UIG0 1483 aaKnown RBP20.74■□□□□ 0.91
COL6A1-207ENST00000612273 BICRAQ9NZM4 1560 aa20.73■□□□□ 0.91
COL6A1-207ENST00000612273 VPS8Q8N3P4 1428 aa20.71■□□□□ 0.91
COL6A1-207ENST00000612273 ATAD2BQ9ULI0 1458 aa20.7■□□□□ 0.9
COL6A1-207ENST00000612273 ATP1B4Q9UN42 357 aaPredicted RBP20.65■□□□□ 0.9
COL6A1-207ENST00000612273 KIF21BO75037 1637 aa20.56■□□□□ 0.88
COL6A1-207ENST00000612273 P3H3Q8IVL6 736 aa20.55■□□□□ 0.88
COL6A1-207ENST00000612273 DHX57Q6P158 1386 aaKnown RBP20.47■□□□□ 0.87
COL6A1-207ENST00000612273 FAM50AQ14320 339 aaKnown RBP20.43■□□□□ 0.86
COL6A1-207ENST00000612273 PEG3Q9GZU2 1588 aa20.42■□□□□ 0.86
COL6A1-207ENST00000612273 ARAP1Q96P48 1450 aa20.42■□□□□ 0.86
COL6A1-207ENST00000612273 KCNH8Q96L42 1107 aa20.41■□□□□ 0.86
COL6A1-207ENST00000612273 HIRIP3Q9BW71 556 aaPredicted RBP20.41■□□□□ 0.86
COL6A1-207ENST00000612273 KIF27Q86VH2 1401 aa20.35■□□□□ 0.85
COL6A1-207ENST00000612273 SIN3AQ96ST3 1273 aa20.34■□□□□ 0.85
COL6A1-207ENST00000612273 TOP2BQ02880 1626 aa20.33■□□□□ 0.85
COL6A1-207ENST00000612273 PRXQ9BXM0 1461 aa20.33■□□□□ 0.84
COL6A1-207ENST00000612273 BCANQ96GW7 911 aa20.32■□□□□ 0.84
COL6A1-207ENST00000612273 CCNB3Q8WWL7 1395 aa20.31■□□□□ 0.84
COL6A1-207ENST00000612273 CUX1P39880 1505 aa20.29■□□□□ 0.84
COL6A1-207ENST00000612273 DDX10Q13206 875 aaKnown RBP20.29■□□□□ 0.84
COL6A1-207ENST00000612273 SUPT16HQ9Y5B9 1047 aaKnown RBP20.24■□□□□ 0.83
COL6A1-207ENST00000612273 CUX2O14529 1486 aa20.24■□□□□ 0.83
COL6A1-207ENST00000612273 RAB3GAP2Q9H2M9 1393 aa20.23■□□□□ 0.83
COL6A1-207ENST00000612273 ARHGAP35Q9NRY4 1499 aa20.22■□□□□ 0.83
COL6A1-207ENST00000612273 CLSPNQ9HAW4 1339 aa20.21■□□□□ 0.83
COL6A1-207ENST00000612273 IGF1RP08069 1367 aa20.16■□□□□ 0.82
COL6A1-207ENST00000612273 ERICH3Q5RHP9 1530 aa20.15■□□□□ 0.82
COL6A1-207ENST00000612273 CARMIL1Q5VZK9 1371 aa20.15■□□□□ 0.82
COL6A1-207ENST00000612273 RRBP1Q9P2E9 1410 aaKnown RBP20.14■□□□□ 0.82
COL6A1-207ENST00000612273 NCAPD3P42695 1498 aa20.12■□□□□ 0.81
COL6A1-207ENST00000612273 TRIM52Q96A61 297 aa20.11■□□□□ 0.81
COL6A1-207ENST00000612273 BIVM-ERCC5R4GMW8 1640 aa20.11■□□□□ 0.81
COL6A1-207ENST00000612273 PHLDB1Q86UU1 1377 aa20.1■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms