Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
SIX3O95343 ZNF563-201ENST00000293725 2754 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
SIX3O95343 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
SIX3O95343 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
SIX3O95343 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
SIX3O95343 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC15.4■□□□□ 0.06
SIX3O95343 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC15.4■□□□□ 0.06
SIX3O95343 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC15.4■□□□□ 0.06
SIX3O95343 AC136604.1-201ENST00000418535 575 ntBASIC15.4■□□□□ 0.06
SIX3O95343 RBPMS2P1-201ENST00000437762 623 ntBASIC15.4■□□□□ 0.06
SIX3O95343 DNAJB3-201ENST00000446806 729 ntBASIC15.4■□□□□ 0.06
SIX3O95343 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC15.4■□□□□ 0.06
SIX3O95343 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC15.4■□□□□ 0.06
SIX3O95343 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC15.4■□□□□ 0.06
SIX3O95343 AC010327.4-202ENST00000591484 748 ntBASIC15.4■□□□□ 0.06
SIX3O95343 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC15.4■□□□□ 0.06
SIX3O95343 AC003101.2-201ENST00000612557 442 ntBASIC15.4■□□□□ 0.06
SIX3O95343 AC068587.6-202ENST00000641839 5619 ntBASIC15.4■□□□□ 0.06
SIX3O95343 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
SIX3O95343 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
SIX3O95343 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC15.4■□□□□ 0.06
SIX3O95343 MTCL1-203ENST00000400050 6042 ntAPPRIS P2 TSL 5 BASIC15.4■□□□□ 0.06
SIX3O95343 DISC1-209ENST00000439617 7059 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
SIX3O95343 CPSF7-202ENST00000394888 3650 ntAPPRIS P4 TSL 2 BASIC15.4■□□□□ 0.06
SIX3O95343 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC15.4■□□□□ 0.06
SIX3O95343 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
SIX3O95343 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
SIX3O95343 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC15.4■□□□□ 0.06
SIX3O95343 VTN-201ENST00000226218 2149 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
SIX3O95343 STRN-202ENST00000379213 2254 ntTSL 5 BASIC15.4■□□□□ 0.06
SIX3O95343 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
SIX3O95343 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
SIX3O95343 ALDH1A2-201ENST00000249750 4098 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
SIX3O95343 USP35-203ENST00000529308 4216 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
SIX3O95343 AC148477.4-201ENST00000613430 1793 ntBASIC15.39■□□□□ 0.05
SIX3O95343 KIAA1211-206ENST00000541073 4117 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
SIX3O95343 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
SIX3O95343 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
SIX3O95343 CSAD-202ENST00000379843 2086 ntTSL 5 BASIC15.39■□□□□ 0.05
SIX3O95343 AC126365.1-201ENST00000578585 1514 ntBASIC15.39■□□□□ 0.05
SIX3O95343 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
SIX3O95343 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
SIX3O95343 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
SIX3O95343 SLC24A3-201ENST00000328041 3929 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
SIX3O95343 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC15.39■□□□□ 0.05
SIX3O95343 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
SIX3O95343 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC15.39■□□□□ 0.05
SIX3O95343 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC15.39■□□□□ 0.05
SIX3O95343 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC15.39■□□□□ 0.05
SIX3O95343 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC15.39■□□□□ 0.05
SIX3O95343 AL645939.2-201ENST00000427340 991 ntBASIC15.39■□□□□ 0.05
SIX3O95343 SPDYE14P-201ENST00000442619 822 ntBASIC15.39■□□□□ 0.05
SIX3O95343 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC15.39■□□□□ 0.05
SIX3O95343 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC15.39■□□□□ 0.05
SIX3O95343 CCND1-203ENST00000536559 553 ntTSL 3 BASIC15.39■□□□□ 0.05
SIX3O95343 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC15.39■□□□□ 0.05
SIX3O95343 CPEB1-211ENST00000615198 2112 ntAPPRIS P2 TSL 1 (best) BASIC15.39■□□□□ 0.05
SIX3O95343 TBCD-202ENST00000539345 3975 ntTSL 5 BASIC15.39■□□□□ 0.05
SIX3O95343 EIF4G1-209ENST00000414031 5569 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
SIX3O95343 TNFSF13-202ENST00000349228 2036 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
SIX3O95343 ZNF497-201ENST00000311044 3468 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
SIX3O95343 GPR153-201ENST00000377893 4082 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
SIX3O95343 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC15.39■□□□□ 0.05
SIX3O95343 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
SIX3O95343 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC15.39■□□□□ 0.05
SIX3O95343 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC15.39■□□□□ 0.05
SIX3O95343 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC15.39■□□□□ 0.05
SIX3O95343 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
SIX3O95343 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC15.39■□□□□ 0.05
SIX3O95343 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC15.39■□□□□ 0.05
SIX3O95343 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC15.39■□□□□ 0.05
SIX3O95343 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
SIX3O95343 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
SIX3O95343 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
SIX3O95343 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
SIX3O95343 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC15.38■□□□□ 0.05
SIX3O95343 LINC00528-201ENST00000600723 2160 ntBASIC15.38■□□□□ 0.05
SIX3O95343 EML1-201ENST00000262233 4535 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
SIX3O95343 KIAA1841-201ENST00000295031 3116 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
SIX3O95343 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
SIX3O95343 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
SIX3O95343 GUCD1-206ENST00000435822 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC15.38■□□□□ 0.05
SIX3O95343 PNPLA3-203ENST00000423180 2222 ntTSL 2 BASIC15.38■□□□□ 0.05
SIX3O95343 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
SIX3O95343 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
SIX3O95343 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC15.38■□□□□ 0.05
SIX3O95343 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
SIX3O95343 HIST3H2BA-201ENST00000436555 524 ntBASIC15.38■□□□□ 0.05
SIX3O95343 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC15.38■□□□□ 0.05
SIX3O95343 AC112482.1-201ENST00000492080 688 ntBASIC15.38■□□□□ 0.05
SIX3O95343 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC15.38■□□□□ 0.05
SIX3O95343 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC15.38■□□□□ 0.05
SIX3O95343 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
SIX3O95343 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC15.38■□□□□ 0.05
SIX3O95343 SUOX-214ENST00000551841 906 ntTSL 3 BASIC15.38■□□□□ 0.05
SIX3O95343 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC15.38■□□□□ 0.05
SIX3O95343 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
SIX3O95343 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
SIX3O95343 AL133215.2-201ENST00000609242 977 ntBASIC15.38■□□□□ 0.05
SIX3O95343 RAB34-224ENST00000636513 888 ntTSL 5 BASIC15.38■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 56.3 ms