Protein–RNA interactions for Protein: Q9NTJ3

SMC4, Structural maintenance of chromosomes protein 4, humanhuman

Predictions only

Length 1,288 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4Q9NTJ3 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC20.19■□□□□ 0.82
SMC4Q9NTJ3 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC20.19■□□□□ 0.82
SMC4Q9NTJ3 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SMC4Q9NTJ3 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
SMC4Q9NTJ3 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
SMC4Q9NTJ3 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC20.18■□□□□ 0.82
SMC4Q9NTJ3 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC20.18■□□□□ 0.82
SMC4Q9NTJ3 CARD11-203ENST00000396946 4366 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
SMC4Q9NTJ3 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
SMC4Q9NTJ3 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC20.18■□□□□ 0.82
SMC4Q9NTJ3 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC20.18■□□□□ 0.82
SMC4Q9NTJ3 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC20.18■□□□□ 0.82
SMC4Q9NTJ3 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC20.18■□□□□ 0.82
SMC4Q9NTJ3 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC20.18■□□□□ 0.82
SMC4Q9NTJ3 AC022144.1-201ENST00000602255 1580 ntBASIC20.18■□□□□ 0.82
SMC4Q9NTJ3 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
SMC4Q9NTJ3 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
SMC4Q9NTJ3 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC20.18■□□□□ 0.82
SMC4Q9NTJ3 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
SMC4Q9NTJ3 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
SMC4Q9NTJ3 BASP1P1-201ENST00000430708 665 ntBASIC20.18■□□□□ 0.82
SMC4Q9NTJ3 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC20.18■□□□□ 0.82
SMC4Q9NTJ3 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC20.18■□□□□ 0.82
SMC4Q9NTJ3 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC20.18■□□□□ 0.82
SMC4Q9NTJ3 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC20.18■□□□□ 0.82
SMC4Q9NTJ3 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC20.18■□□□□ 0.82
SMC4Q9NTJ3 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
SMC4Q9NTJ3 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC20.18■□□□□ 0.82
SMC4Q9NTJ3 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
SMC4Q9NTJ3 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
SMC4Q9NTJ3 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
SMC4Q9NTJ3 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC20.18■□□□□ 0.82
SMC4Q9NTJ3 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC20.18■□□□□ 0.82
SMC4Q9NTJ3 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC20.18■□□□□ 0.82
SMC4Q9NTJ3 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
SMC4Q9NTJ3 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
SMC4Q9NTJ3 SLC30A4-201ENST00000261867 7157 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
SMC4Q9NTJ3 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC20.18■□□□□ 0.82
SMC4Q9NTJ3 NAA30-204ENST00000556492 7644 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
SMC4Q9NTJ3 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
SMC4Q9NTJ3 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
SMC4Q9NTJ3 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
SMC4Q9NTJ3 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
SMC4Q9NTJ3 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC20.18■□□□□ 0.82
SMC4Q9NTJ3 MAPK7-201ENST00000299612 2715 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
SMC4Q9NTJ3 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC20.18■□□□□ 0.82
SMC4Q9NTJ3 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC20.18■□□□□ 0.82
SMC4Q9NTJ3 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC20.17■□□□□ 0.82
SMC4Q9NTJ3 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC20.17■□□□□ 0.82
SMC4Q9NTJ3 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC20.17■□□□□ 0.82
SMC4Q9NTJ3 ZC3H7B-201ENST00000352645 5909 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
SMC4Q9NTJ3 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
SMC4Q9NTJ3 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
SMC4Q9NTJ3 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
SMC4Q9NTJ3 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
SMC4Q9NTJ3 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
SMC4Q9NTJ3 TNFRSF14-AS1-202ENST00000432521 3608 ntTSL 2 BASIC20.17■□□□□ 0.82
SMC4Q9NTJ3 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
SMC4Q9NTJ3 AC126177.1-201ENST00000547829 2218 ntBASIC20.17■□□□□ 0.82
SMC4Q9NTJ3 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
SMC4Q9NTJ3 SYT1-201ENST00000261205 4808 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
SMC4Q9NTJ3 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
SMC4Q9NTJ3 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC20.17■□□□□ 0.82
SMC4Q9NTJ3 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC20.17■□□□□ 0.82
SMC4Q9NTJ3 AL512638.1-201ENST00000457493 794 ntBASIC20.17■□□□□ 0.82
SMC4Q9NTJ3 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
SMC4Q9NTJ3 SPDYE18-201ENST00000510091 1050 ntBASIC20.17■□□□□ 0.82
SMC4Q9NTJ3 STOM-203ENST00000538954 1257 ntTSL 5 BASIC20.17■□□□□ 0.82
SMC4Q9NTJ3 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC20.17■□□□□ 0.82
SMC4Q9NTJ3 AC004461.2-201ENST00000629517 803 ntBASIC20.17■□□□□ 0.82
SMC4Q9NTJ3 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC20.17■□□□□ 0.82
SMC4Q9NTJ3 AC004840.1-201ENST00000636359 365 ntBASIC20.17■□□□□ 0.82
SMC4Q9NTJ3 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
SMC4Q9NTJ3 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC20.17■□□□□ 0.82
SMC4Q9NTJ3 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
SMC4Q9NTJ3 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
SMC4Q9NTJ3 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
SMC4Q9NTJ3 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC20.17■□□□□ 0.82
SMC4Q9NTJ3 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC20.17■□□□□ 0.82
SMC4Q9NTJ3 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
SMC4Q9NTJ3 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
SMC4Q9NTJ3 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC20.17■□□□□ 0.82
SMC4Q9NTJ3 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
SMC4Q9NTJ3 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
SMC4Q9NTJ3 KIF5C-201ENST00000435030 6931 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
SMC4Q9NTJ3 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
SMC4Q9NTJ3 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
SMC4Q9NTJ3 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC20.17■□□□□ 0.82
SMC4Q9NTJ3 MYB-242ENST00000618728 3545 ntTSL 5 BASIC20.16■□□□□ 0.82
SMC4Q9NTJ3 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC20.16■□□□□ 0.82
SMC4Q9NTJ3 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
SMC4Q9NTJ3 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
SMC4Q9NTJ3 AC022532.1-201ENST00000624563 1728 ntBASIC20.16■□□□□ 0.82
SMC4Q9NTJ3 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC20.16■□□□□ 0.82
SMC4Q9NTJ3 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC20.16■□□□□ 0.82
SMC4Q9NTJ3 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
SMC4Q9NTJ3 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
SMC4Q9NTJ3 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC20.16■□□□□ 0.82
SMC4Q9NTJ3 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
SMC4Q9NTJ3 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC20.16■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms