Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC15.26■□□□□ 0.03
FOXA1P55317 TM4SF4-201ENST00000305354 2101 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
FOXA1P55317 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC15.26■□□□□ 0.03
FOXA1P55317 AHRR-201ENST00000316418 5661 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
FOXA1P55317 C6orf120-201ENST00000332290 2667 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
FOXA1P55317 FMR1-203ENST00000370470 1774 ntTSL 5 BASIC15.26■□□□□ 0.03
FOXA1P55317 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC15.26■□□□□ 0.03
FOXA1P55317 BRF1-211ENST00000547530 3358 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
FOXA1P55317 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
FOXA1P55317 NUMBL-201ENST00000252891 3561 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
FOXA1P55317 FMNL1-206ENST00000587489 2487 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
FOXA1P55317 AL009178.2-201ENST00000597278 2719 ntBASIC15.25■□□□□ 0.03
FOXA1P55317 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
FOXA1P55317 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
FOXA1P55317 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
FOXA1P55317 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC15.25■□□□□ 0.03
FOXA1P55317 CLUH-202ENST00000570628 5244 ntAPPRIS P2 TSL 2 BASIC15.25■□□□□ 0.03
FOXA1P55317 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC15.25■□□□□ 0.03
FOXA1P55317 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC15.25■□□□□ 0.03
FOXA1P55317 SLC4A2-202ENST00000413384 4142 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
FOXA1P55317 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
FOXA1P55317 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
FOXA1P55317 FABP5-202ENST00000396359 986 ntTSL 5 BASIC15.25■□□□□ 0.03
FOXA1P55317 HIST3H2BA-201ENST00000436555 524 ntBASIC15.25■□□□□ 0.03
FOXA1P55317 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC15.25■□□□□ 0.03
FOXA1P55317 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC15.25■□□□□ 0.03
FOXA1P55317 CEND1P1-201ENST00000451006 455 ntBASIC15.25■□□□□ 0.03
FOXA1P55317 AC093520.2-201ENST00000561830 333 ntBASIC15.25■□□□□ 0.03
FOXA1P55317 AC105021.1-202ENST00000570572 669 ntBASIC15.25■□□□□ 0.03
FOXA1P55317 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC15.25■□□□□ 0.03
FOXA1P55317 MTDHP5-201ENST00000598980 586 ntBASIC15.25■□□□□ 0.03
FOXA1P55317 GPI-205ENST00000586425 1799 ntTSL 5 BASIC15.25■□□□□ 0.03
FOXA1P55317 RPTOR-203ENST00000570891 2286 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
FOXA1P55317 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
FOXA1P55317 ST14-201ENST00000278742 3539 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
FOXA1P55317 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
FOXA1P55317 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC15.25■□□□□ 0.03
FOXA1P55317 ARHGEF16-201ENST00000378371 2219 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
FOXA1P55317 SYNGR2-207ENST00000590201 2239 ntTSL 5 BASIC15.25■□□□□ 0.03
FOXA1P55317 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC15.25■□□□□ 0.03
FOXA1P55317 C4orf19-201ENST00000284437 1949 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
FOXA1P55317 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
FOXA1P55317 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
FOXA1P55317 DHCR7-202ENST00000407721 2601 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
FOXA1P55317 PRKD2-201ENST00000291281 3070 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
FOXA1P55317 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
FOXA1P55317 AC007686.3-201ENST00000619017 3487 ntBASIC15.25■□□□□ 0.03
FOXA1P55317 SEC24D-202ENST00000419654 2786 ntTSL 5 BASIC15.24■□□□□ 0.03
FOXA1P55317 AL139082.1-201ENST00000613982 3433 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
FOXA1P55317 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
FOXA1P55317 KIF5B-201ENST00000302418 5877 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
FOXA1P55317 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
FOXA1P55317 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
FOXA1P55317 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC15.24■□□□□ 0.03
FOXA1P55317 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC15.24■□□□□ 0.03
FOXA1P55317 NEK7-202ENST00000367385 4149 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
FOXA1P55317 KIAA0319L-201ENST00000325722 4789 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
FOXA1P55317 UBE2D3-207ENST00000394801 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC15.24■□□□□ 0.03
FOXA1P55317 EML1-201ENST00000262233 4535 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
FOXA1P55317 E2F6-202ENST00000381525 3218 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
FOXA1P55317 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC15.24■□□□□ 0.03
FOXA1P55317 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
FOXA1P55317 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
FOXA1P55317 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
FOXA1P55317 RBM39-205ENST00000397370 612 ntTSL 2 BASIC15.24■□□□□ 0.03
FOXA1P55317 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
FOXA1P55317 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC15.24■□□□□ 0.03
FOXA1P55317 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC15.24■□□□□ 0.03
FOXA1P55317 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
FOXA1P55317 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
FOXA1P55317 FXR1-221ENST00000491674 365 ntTSL 2 BASIC15.24■□□□□ 0.03
FOXA1P55317 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC15.24■□□□□ 0.03
FOXA1P55317 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC15.24■□□□□ 0.03
FOXA1P55317 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC15.24■□□□□ 0.03
FOXA1P55317 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC15.24■□□□□ 0.03
FOXA1P55317 ALG1L8P-201ENST00000533887 760 ntBASIC15.24■□□□□ 0.03
FOXA1P55317 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC15.24■□□□□ 0.03
FOXA1P55317 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC15.24■□□□□ 0.03
FOXA1P55317 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
FOXA1P55317 AC055717.3-201ENST00000622967 595 ntBASIC15.24■□□□□ 0.03
FOXA1P55317 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
FOXA1P55317 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
FOXA1P55317 USP25-201ENST00000285679 3973 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
FOXA1P55317 SNX18-202ENST00000343017 3140 ntBASIC15.24■□□□□ 0.03
FOXA1P55317 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC15.24■□□□□ 0.03
FOXA1P55317 LINC01101-201ENST00000622953 1884 ntBASIC15.24■□□□□ 0.03
FOXA1P55317 LAMC1-201ENST00000258341 7889 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
FOXA1P55317 USH1C-207ENST00000527720 2278 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
FOXA1P55317 SESN1-202ENST00000356644 2676 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
FOXA1P55317 SYTL3-205ENST00000611299 2896 ntAPPRIS ALT1 TSL 5 BASIC15.24■□□□□ 0.03
FOXA1P55317 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
FOXA1P55317 FAM45BP-202ENST00000592932 1624 ntBASIC15.24■□□□□ 0.03
FOXA1P55317 SYNE3-203ENST00000554873 2826 ntTSL 5 BASIC15.24■□□□□ 0.03
FOXA1P55317 GRB2-201ENST00000316615 3181 ntTSL 5 BASIC15.24■□□□□ 0.03
FOXA1P55317 ZMYND11-208ENST00000397962 2150 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
FOXA1P55317 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
FOXA1P55317 NUP93-201ENST00000308159 2741 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
FOXA1P55317 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC15.23■□□□□ 0.03
FOXA1P55317 IPPK-201ENST00000287996 4401 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
FOXA1P55317 INPP4A-202ENST00000409016 9996 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 38.9 ms