RNA–Protein interactions for RNA: ENST00000343017.11

SNX18-202, Transcript of sorting nexin 18, humanhuman

BASIC

Gene SNX18, Length 3,140 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX18-202ENST00000343017 NISCHQ9Y2I1 1504 aa29.35■■■□□ 2.29
SNX18-202ENST00000343017 SHROOM4Q9ULL8 1493 aa25.88■■□□□ 1.73
SNX18-202ENST00000343017 HRCP23327 699 aa25.81■■□□□ 1.72
SNX18-202ENST00000343017 SUPT5HO00267 1087 aaKnown RBP25.77■■□□□ 1.72
SNX18-202ENST00000343017 PPARGC1BQ86YN6 1023 aaKnown RBP25.54■■□□□ 1.68
SNX18-202ENST00000343017 PCGF6Q9BYE7 350 aa25.49■■□□□ 1.67
SNX18-202ENST00000343017 MYO15BQ96JP2 1530 aa25.34■■□□□ 1.65
SNX18-202ENST00000343017 DCAF8L2P0C7V8 631 aa25.31■■□□□ 1.64
SNX18-202ENST00000343017 CHIC1Q5VXU3 224 aa25.19■■□□□ 1.62
SNX18-202ENST00000343017 CCDC180Q9P1Z9 1646 aa24.91■■□□□ 1.58
SNX18-202ENST00000343017 LOC105371045A0A1W2PR82 267 aa24.78■■□□□ 1.56
SNX18-202ENST00000343017 ZCCHC6Q5VYS8 1495 aaKnown RBP24.65■■□□□ 1.54
SNX18-202ENST00000343017 PELP1Q8IZL8 1130 aaKnown RBP24.55■■□□□ 1.52
SNX18-202ENST00000343017 DCAF1Q9Y4B6 1507 aa24.54■■□□□ 1.52
SNX18-202ENST00000343017 TRIM26Q12899 539 aaPredicted RBP24.49■■□□□ 1.51
SNX18-202ENST00000343017 SCAF1Q9H7N4 1312 aaKnown RBP24.49■■□□□ 1.51
SNX18-202ENST00000343017 ZEB1P37275 1124 aaPredicted RBP24.14■■□□□ 1.45
SNX18-202ENST00000343017 ABCC9O60706 1549 aa24.13■■□□□ 1.45
SNX18-202ENST00000343017 EHMT2Q96KQ7 1210 aa23.95■■□□□ 1.42
SNX18-202ENST00000343017 FAM9AQ8IZU1 332 aaPredicted RBP23.9■■□□□ 1.42
SNX18-202ENST00000343017 NEUROD1Q13562 356 aa23.86■■□□□ 1.41
SNX18-202ENST00000343017 ACIN1Q9UKV3 1341 aaKnown RBP23.82■■□□□ 1.4
SNX18-202ENST00000343017 GTF3C3Q9Y5Q9 886 aa23.72■■□□□ 1.39
SNX18-202ENST00000343017 SCRIBQ14160 1630 aa23.7■■□□□ 1.38
SNX18-202ENST00000343017 TRIM41Q8WV44 630 aa23.7■■□□□ 1.38
SNX18-202ENST00000343017 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.66■■□□□ 1.38
SNX18-202ENST00000343017 CCER1Q8TC90 406 aaPredicted RBP23.53■■□□□ 1.36
SNX18-202ENST00000343017 DIEXFQ68CQ4 756 aaKnown RBP23.49■■□□□ 1.35
SNX18-202ENST00000343017 MYT1Q01538 1121 aa23.46■■□□□ 1.35
SNX18-202ENST00000343017 CENPBP07199 599 aaPredicted RBP23.44■■□□□ 1.34
SNX18-202ENST00000343017 TTBK1Q5TCY1 1321 aaPredicted RBP23.32■■□□□ 1.32
SNX18-202ENST00000343017 NACADO15069 1562 aa23.31■■□□□ 1.32
SNX18-202ENST00000343017 YTHDC1Q96MU7 727 aaKnown RBP23.28■■□□□ 1.32
SNX18-202ENST00000343017 RSF1Q96T23 1441 aaPredicted RBP23.28■■□□□ 1.32
SNX18-202ENST00000343017 RB1CC1Q8TDY2 1594 aa23.18■■□□□ 1.3
SNX18-202ENST00000343017 PABPN1Q86U42 306 aaKnown RBP eCLIP23.17■■□□□ 1.3
SNX18-202ENST00000343017 CECR2Q9BXF3 1484 aa23.12■■□□□ 1.29
SNX18-202ENST00000343017 ZNF316A6NFI3 1004 aaPredicted RBP23■■□□□ 1.27
SNX18-202ENST00000343017 MIER1Q8N108 512 aa22.97■■□□□ 1.27
SNX18-202ENST00000343017 MROH2BQ7Z745 1585 aa22.9■■□□□ 1.26
SNX18-202ENST00000343017 WIZO95785 1651 aa22.72■■□□□ 1.23
SNX18-202ENST00000343017 HNRNPUL2Q1KMD3 747 aaKnown RBP22.67■■□□□ 1.22
SNX18-202ENST00000343017 CEP162Q5TB80 1403 aa22.62■■□□□ 1.21
SNX18-202ENST00000343017 UNC13AQ9UPW8 1703 aa22.61■■□□□ 1.21
SNX18-202ENST00000343017 WRNQ14191 1432 aaPredicted RBP eCLIP22.59■■□□□ 1.21
SNX18-202ENST00000343017 BAZ1AQ9NRL2 1556 aaPredicted RBP22.56■■□□□ 1.2
SNX18-202ENST00000343017 UBTFP17480 764 aaKnown RBP22.55■■□□□ 1.2
SNX18-202ENST00000343017 SUPT16HQ9Y5B9 1047 aaKnown RBP22.53■■□□□ 1.2
SNX18-202ENST00000343017 CCDC88BA6NC98 1476 aa22.5■■□□□ 1.19
SNX18-202ENST00000343017 SOGA1O94964 1423 aa22.47■■□□□ 1.19
SNX18-202ENST00000343017 ABCC8Q09428 1581 aa22.46■■□□□ 1.19
SNX18-202ENST00000343017 BICRAQ9NZM4 1560 aa22.46■■□□□ 1.19
SNX18-202ENST00000343017 TSHZ2Q9NRE2 1034 aa22.43■■□□□ 1.18
SNX18-202ENST00000343017 SMARCA4P51532 1647 aa22.42■■□□□ 1.18
SNX18-202ENST00000343017 TNIKQ9UKE5 1360 aa22.41■■□□□ 1.18
SNX18-202ENST00000343017 ANP32EQ9BTT0 268 aa22.37■■□□□ 1.17
SNX18-202ENST00000343017 RUSC2Q8N2Y8 1516 aa22.36■■□□□ 1.17
SNX18-202ENST00000343017 CSRNP3Q8WYN3 585 aa22.36■■□□□ 1.17
SNX18-202ENST00000343017 BCL11AQ9H165 835 aa22.33■■□□□ 1.16
SNX18-202ENST00000343017 EIF4G1Q04637 1599 aaKnown RBP22.31■■□□□ 1.16
SNX18-202ENST00000343017 RANGAP1P46060 587 aaPredicted RBP22.25■■□□□ 1.15
SNX18-202ENST00000343017 BCANQ96GW7 911 aa22.24■■□□□ 1.15
SNX18-202ENST00000343017 TOP2AP11388 1531 aaKnown RBP22.23■■□□□ 1.15
SNX18-202ENST00000343017 KCNH8Q96L42 1107 aa22.19■■□□□ 1.14
SNX18-202ENST00000343017 CLSPNQ9HAW4 1339 aa22.15■■□□□ 1.14
SNX18-202ENST00000343017 SMARCA2P51531 1590 aa22.13■■□□□ 1.13
SNX18-202ENST00000343017 GOLGA3Q08378 1498 aa22.1■■□□□ 1.13
SNX18-202ENST00000343017 APLP2Q06481 763 aa22.1■■□□□ 1.13
SNX18-202ENST00000343017 ATAD2BQ9ULI0 1458 aa22.08■■□□□ 1.12
SNX18-202ENST00000343017 BAZ1BQ9UIG0 1483 aaKnown RBP22.06■■□□□ 1.12
SNX18-202ENST00000343017 CLIP1P30622 1438 aa22.02■■□□□ 1.12
SNX18-202ENST00000343017 FKBP8Q14318 412 aa22.02■■□□□ 1.11
SNX18-202ENST00000343017 EEA1Q15075 1411 aa22.01■■□□□ 1.11
SNX18-202ENST00000343017 DHX57Q6P158 1386 aaKnown RBP22.01■■□□□ 1.11
SNX18-202ENST00000343017 VPS8Q8N3P4 1428 aa21.93■■□□□ 1.1
SNX18-202ENST00000343017 ITGAEP38570 1179 aa21.91■■□□□ 1.1
SNX18-202ENST00000343017 RBM19Q9Y4C8 960 aaKnown RBP21.91■■□□□ 1.1
SNX18-202ENST00000343017 CEP164Q9UPV0 1460 aa21.86■■□□□ 1.09
SNX18-202ENST00000343017 KANK4Q5T7N3 995 aaPredicted RBP21.83■■□□□ 1.08
SNX18-202ENST00000343017 PEG3Q9GZU2 1588 aa21.81■■□□□ 1.08
SNX18-202ENST00000343017 DDX10Q13206 875 aaKnown RBP21.8■■□□□ 1.08
SNX18-202ENST00000343017 RAPGEF2Q9Y4G8 1499 aa21.79■■□□□ 1.08
SNX18-202ENST00000343017 TRIM52Q96A61 297 aa21.76■■□□□ 1.07
SNX18-202ENST00000343017 MSH5O43196 834 aa21.75■■□□□ 1.07
SNX18-202ENST00000343017 KIF21BO75037 1637 aa21.74■■□□□ 1.07
SNX18-202ENST00000343017 HIRIP3Q9BW71 556 aaPredicted RBP21.71■■□□□ 1.07
SNX18-202ENST00000343017 NEFLP07196 543 aa21.71■■□□□ 1.07
SNX18-202ENST00000343017 SYNJ1O43426 1573 aa21.68■■□□□ 1.06
SNX18-202ENST00000343017 NCAPD3P42695 1498 aa21.65■■□□□ 1.06
SNX18-202ENST00000343017 SIN3AQ96ST3 1273 aa21.6■■□□□ 1.05
SNX18-202ENST00000343017 IRX6P78412 446 aaPredicted RBP21.57■■□□□ 1.04
SNX18-202ENST00000343017 PPP1R15AO75807 674 aaPredicted RBP21.52■■□□□ 1.04
SNX18-202ENST00000343017 RAB3GAP2Q9H2M9 1393 aa21.51■■□□□ 1.03
SNX18-202ENST00000343017 ARAP1Q96P48 1450 aa21.51■■□□□ 1.03
SNX18-202ENST00000343017 CCNB3Q8WWL7 1395 aa21.5■■□□□ 1.03
SNX18-202ENST00000343017 RRBP1Q9P2E9 1410 aaKnown RBP21.49■■□□□ 1.03
SNX18-202ENST00000343017 HMGXB3Q12766 1538 aa21.49■■□□□ 1.03
SNX18-202ENST00000343017 DNAJC5BQ9UF47 199 aa21.49■■□□□ 1.03
SNX18-202ENST00000343017 ERICH6Q7L0X2 663 aa21.47■■□□□ 1.03
SNX18-202ENST00000343017 WDR97A6NE52 1622 aa21.47■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 72.8 ms