Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 AL513523.2-202ENST00000427283 2040 ntBASIC12.21□□□□□ -0.46
HOXD3P31249 AL365209.1-201ENST00000624418 6473 ntBASIC12.21□□□□□ -0.46
HOXD3P31249 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
HOXD3P31249 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
HOXD3P31249 KMT2E-201ENST00000257745 6714 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
HOXD3P31249 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC12.21□□□□□ -0.46
HOXD3P31249 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC12.21□□□□□ -0.46
HOXD3P31249 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC12.21□□□□□ -0.46
HOXD3P31249 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC12.21□□□□□ -0.46
HOXD3P31249 PHLDA1-201ENST00000266671 8069 ntAPPRIS P2 TSL 1 (best) BASIC12.21□□□□□ -0.46
HOXD3P31249 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC12.2□□□□□ -0.46
HOXD3P31249 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC12.2□□□□□ -0.46
HOXD3P31249 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC12.2□□□□□ -0.46
HOXD3P31249 ATG2A-201ENST00000377264 6357 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
HOXD3P31249 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC12.2□□□□□ -0.46
HOXD3P31249 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
HOXD3P31249 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC12.2□□□□□ -0.46
HOXD3P31249 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC12.2□□□□□ -0.46
HOXD3P31249 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC12.2□□□□□ -0.46
HOXD3P31249 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC12.2□□□□□ -0.46
HOXD3P31249 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
HOXD3P31249 ZSWIM8-221ENST00000604729 6075 ntAPPRIS ALT1 TSL 5 BASIC12.2□□□□□ -0.46
HOXD3P31249 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC12.2□□□□□ -0.46
HOXD3P31249 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC12.2□□□□□ -0.46
HOXD3P31249 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC12.2□□□□□ -0.46
HOXD3P31249 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC12.2□□□□□ -0.46
HOXD3P31249 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC12.2□□□□□ -0.46
HOXD3P31249 LSS-202ENST00000397728 4936 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
HOXD3P31249 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
HOXD3P31249 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
HOXD3P31249 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC12.2□□□□□ -0.46
HOXD3P31249 GRN-214ENST00000589265 1632 ntTSL 5 BASIC12.2□□□□□ -0.46
HOXD3P31249 AC024909.3-201ENST00000611513 2257 ntBASIC12.2□□□□□ -0.46
HOXD3P31249 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC12.2□□□□□ -0.46
HOXD3P31249 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC12.2□□□□□ -0.46
HOXD3P31249 POM121-202ENST00000395270 7011 ntAPPRIS ALT2 TSL 1 (best) BASIC12.2□□□□□ -0.46
HOXD3P31249 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC12.2□□□□□ -0.46
HOXD3P31249 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC12.2□□□□□ -0.46
HOXD3P31249 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC12.2□□□□□ -0.46
HOXD3P31249 ZFAND2B-203ENST00000409206 1159 ntTSL 2 BASIC12.2□□□□□ -0.46
HOXD3P31249 PTPA-213ENST00000419582 952 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
HOXD3P31249 AC114501.2-201ENST00000439631 535 ntBASIC12.2□□□□□ -0.46
HOXD3P31249 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC12.2□□□□□ -0.46
HOXD3P31249 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC12.2□□□□□ -0.46
HOXD3P31249 RN7SL837P-201ENST00000463010 287 ntBASIC12.2□□□□□ -0.46
HOXD3P31249 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC12.2□□□□□ -0.46
HOXD3P31249 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC12.2□□□□□ -0.46
HOXD3P31249 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC12.2□□□□□ -0.46
HOXD3P31249 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC12.2□□□□□ -0.46
HOXD3P31249 AC123567.1-201ENST00000548294 1261 ntBASIC12.2□□□□□ -0.46
HOXD3P31249 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC12.2□□□□□ -0.46
HOXD3P31249 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC12.2□□□□□ -0.46
HOXD3P31249 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC12.2□□□□□ -0.46
HOXD3P31249 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC12.2□□□□□ -0.46
HOXD3P31249 5S_rRNA.22-201ENST00000614916 106 ntBASIC12.2□□□□□ -0.46
HOXD3P31249 MIR6805-201ENST00000615055 62 ntBASIC12.2□□□□□ -0.46
HOXD3P31249 AL162274.1-201ENST00000617191 1098 ntBASIC12.2□□□□□ -0.46
HOXD3P31249 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC12.2□□□□□ -0.46
HOXD3P31249 DOC2GP-204ENST00000639052 2548 ntBASIC12.2□□□□□ -0.46
HOXD3P31249 PDPK1-202ENST00000342085 7241 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
HOXD3P31249 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC12.2□□□□□ -0.46
HOXD3P31249 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
HOXD3P31249 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC12.2□□□□□ -0.46
HOXD3P31249 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
HOXD3P31249 STK17B-201ENST00000263955 5287 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
HOXD3P31249 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
HOXD3P31249 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
HOXD3P31249 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
HOXD3P31249 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
HOXD3P31249 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC12.2□□□□□ -0.46
HOXD3P31249 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC12.2□□□□□ -0.46
HOXD3P31249 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC12.2□□□□□ -0.46
HOXD3P31249 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC12.2□□□□□ -0.46
HOXD3P31249 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC12.2□□□□□ -0.46
HOXD3P31249 SMAD2-202ENST00000356825 10445 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
HOXD3P31249 AP003680.1-201ENST00000598970 3660 ntBASIC12.19□□□□□ -0.46
HOXD3P31249 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
HOXD3P31249 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC12.19□□□□□ -0.46
HOXD3P31249 ITPKB-201ENST00000272117 5822 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
HOXD3P31249 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
HOXD3P31249 AC018892.3-201ENST00000623986 2499 ntBASIC12.19□□□□□ -0.46
HOXD3P31249 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
HOXD3P31249 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
HOXD3P31249 ITSN1-205ENST00000381291 5437 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
HOXD3P31249 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC12.19□□□□□ -0.46
HOXD3P31249 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC12.19□□□□□ -0.46
HOXD3P31249 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC12.19□□□□□ -0.46
HOXD3P31249 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC12.19□□□□□ -0.46
HOXD3P31249 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
HOXD3P31249 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
HOXD3P31249 AL603832.2-201ENST00000566195 2125 ntBASIC12.19□□□□□ -0.46
HOXD3P31249 RBFOX1-212ENST00000550418 4775 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
HOXD3P31249 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
HOXD3P31249 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
HOXD3P31249 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC12.19□□□□□ -0.46
HOXD3P31249 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC12.19□□□□□ -0.46
HOXD3P31249 SSFA2-205ENST00000431877 5150 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
HOXD3P31249 CAMKK2-211ENST00000538733 5175 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
HOXD3P31249 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
HOXD3P31249 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC12.19□□□□□ -0.46
Retrieved 100 of 98,524 protein–RNA pairs in 76.9 ms