Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 C19orf24-204ENST00000585716 558 ntTSL 515.47■□□□□ 0.075e-9■■■■□ 23
DDX55Q8NHQ9 SELENBP1-206ENST00000427977 1611 ntTSL 515.24■□□□□ 0.035e-9■■■■□ 23
DDX55Q8NHQ9 SELENBP1-218ENST00000493560 1963 ntTSL 515.06■□□□□ 05e-9■■■■□ 23
DDX55Q8NHQ9 AC132872.1-201ENST00000566986 1195 ntBASIC13.97□□□□□ -0.175e-9■■■■□ 23
DDX55Q8NHQ9 SELENBP1-214ENST00000470345 2128 ntTSL 213.52□□□□□ -0.245e-9■■■■□ 23
DDX55Q8NHQ9 SELENBP1-209ENST00000455397 1521 ntTSL 513.11□□□□□ -0.315e-9■■■■□ 23
DDX55Q8NHQ9 SELENBP1-216ENST00000474352 2840 ntTSL 212.97□□□□□ -0.335e-9■■■■□ 23
DDX55Q8NHQ9 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC22.78■■□□□ 1.248e-9■■■■□ 22.9
DDX55Q8NHQ9 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.688e-9■■■■□ 22.9
DDX55Q8NHQ9 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC21.77■■□□□ 1.074e-6■■■■□ 22.9
DDX55Q8NHQ9 SMIM24-203ENST00000587847 820 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.444e-6■■■■□ 22.9
DDX55Q8NHQ9 SMIM24-204ENST00000591708 660 ntAPPRIS ALT2 TSL 2 BASIC6.45□□□□□ -1.384e-6■■■■□ 22.9
DDX55Q8NHQ9 SCAMP2-203ENST00000563663 1787 ntTSL 517.75■□□□□ 0.439e-8■■■■□ 22.8
DDX55Q8NHQ9 SCAMP2-201ENST00000268099 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.189e-8■■■■□ 22.8
DDX55Q8NHQ9 SCAMP2-207ENST00000566480 2476 ntTSL 513.23□□□□□ -0.299e-8■■■■□ 22.8
DDX55Q8NHQ9 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC22.81■■□□□ 1.242e-11■■■■□ 22.7
DDX55Q8NHQ9 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.772e-11■■■■□ 22.7
DDX55Q8NHQ9 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC26.89■■□□□ 1.93e-11■■■■□ 22.7
DDX55Q8NHQ9 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC23.68■■□□□ 1.383e-11■■■■□ 22.7
DDX55Q8NHQ9 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC23.63■■□□□ 1.373e-11■■■■□ 22.7
DDX55Q8NHQ9 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC23.18■■□□□ 1.33e-11■■■■□ 22.7
DDX55Q8NHQ9 PKMYT1-219ENST00000575981 910 ntTSL 223.16■■□□□ 1.35e-32■■■■□ 22.7
DDX55Q8NHQ9 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC21.87■■□□□ 1.093e-11■■■■□ 22.7
DDX55Q8NHQ9 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC20.72■□□□□ 0.913e-11■■■■□ 22.7
DDX55Q8NHQ9 PKMYT1-212ENST00000574333 479 ntTSL 318.08■□□□□ 0.485e-32■■■■□ 22.7
DDX55Q8NHQ9 NDUFC2-KCTD14-202ENST00000530054 656 ntAPPRIS P3 TSL 2 BASIC17.53■□□□□ 0.41e-23■■■■□ 22.7
DDX55Q8NHQ9 JPT1-210ENST00000580380 411 ntTSL 517.46■□□□□ 0.391e-10■■■■□ 22.7
DDX55Q8NHQ9 PKMYT1-217ENST00000575040 605 ntTSL 316.61■□□□□ 0.255e-32■■■■□ 22.7
DDX55Q8NHQ9 NDUFC2-201ENST00000281031 2518 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.111e-23■■■■□ 22.7
DDX55Q8NHQ9 PKMYT1-215ENST00000574680 717 ntTSL 215.22■□□□□ 0.035e-32■■■■□ 22.7
DDX55Q8NHQ9 NDUFC2-KCTD14-201ENST00000528251 566 ntTSL 4 BASIC14.26□□□□□ -0.131e-23■■■■□ 22.7
DDX55Q8NHQ9 NDUFC2-KCTD14-204ENST00000614236 386 ntTSL 5 BASIC13.22□□□□□ -0.291e-23■■■■□ 22.7
DDX55Q8NHQ9 NDUFC2-203ENST00000527806 1888 ntTSL 2 BASIC12.08□□□□□ -0.481e-23■■■■□ 22.7
DDX55Q8NHQ9 NDUFC2-KCTD14-203ENST00000612612 530 ntAPPRIS ALT2 TSL 2 BASIC11.85□□□□□ -0.511e-23■■■■□ 22.7
DDX55Q8NHQ9 NDUFC2-202ENST00000525085 495 ntTSL 3 BASIC11.76□□□□□ -0.531e-23■■■■□ 22.7
DDX55Q8NHQ9 NDUFC2-205ENST00000534029 422 ntTSL 2 BASIC11.76□□□□□ -0.531e-23■■■■□ 22.7
DDX55Q8NHQ9 JPT1-211ENST00000581874 517 ntTSL 5 BASIC10.21□□□□□ -0.771e-10■■■■□ 22.7
DDX55Q8NHQ9 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.253e-7■■■■□ 22.6
DDX55Q8NHQ9 EPHB4-206ENST00000487222 5058 ntTSL 1 (best)16.18■□□□□ 0.183e-7■■■■□ 22.6
DDX55Q8NHQ9 EPHB4-210ENST00000616502 3737 ntTSL 5 BASIC15.1■□□□□ 0.013e-7■■■■□ 22.6
DDX55Q8NHQ9 EPHB4-202ENST00000360620 3789 ntTSL 1 (best) BASIC12.79□□□□□ -0.363e-7■■■■□ 22.6
DDX55Q8NHQ9 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC21.45■■□□□ 1.028e-10■■■■□ 22.6
DDX55Q8NHQ9 BLCAP-213ENST00000467603 439 ntTSL 319.56■□□□□ 0.728e-10■■■■□ 22.6
DDX55Q8NHQ9 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.538e-10■■■■□ 22.6
DDX55Q8NHQ9 BLCAP-205ENST00000397137 2036 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.268e-10■■■■□ 22.6
DDX55Q8NHQ9 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.215e-12■■■■□ 22.6
DDX55Q8NHQ9 HMGA2-204ENST00000403681 4473 ntAPPRIS P3 TSL 1 (best) BASIC15.06■□□□□ 03e-10■■■■□ 22.6
DDX55Q8NHQ9 CEP250-204ENST00000422671 2648 ntTSL 515.59■□□□□ 0.093e-7■■■■□ 22.5
DDX55Q8NHQ9 CEP250-202ENST00000397527 15703 ntAPPRIS P1 TSL 5 BASIC8.56□□□□□ -1.043e-7■■■■□ 22.5
DDX55Q8NHQ9 MCM5-209ENST00000493076 4599 ntTSL 213.17□□□□□ -0.34e-7■■■■□ 22.5
DDX55Q8NHQ9 MCM5-202ENST00000382011 2402 ntTSL 2 BASIC12.79□□□□□ -0.364e-7■■■■□ 22.5
DDX55Q8NHQ9 MCM5-201ENST00000216122 3534 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.624e-7■■■■□ 22.5
DDX55Q8NHQ9 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC21.24■□□□□ 0.992e-21■■■■□ 22.5
DDX55Q8NHQ9 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.792e-21■■■■□ 22.5
DDX55Q8NHQ9 UBE2I-206ENST00000403747 1217 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.272e-21■■■■□ 22.5
DDX55Q8NHQ9 UBE2I-201ENST00000325437 2832 ntAPPRIS P1 TSL 3 BASIC15.77■□□□□ 0.122e-21■■■■□ 22.5
DDX55Q8NHQ9 UBE2I-204ENST00000397515 3109 ntAPPRIS P1 TSL 3 BASIC14.1□□□□□ -0.152e-21■■■■□ 22.5
DDX55Q8NHQ9 UBE2I-202ENST00000355803 3253 ntAPPRIS P1 TSL 2 BASIC13.66□□□□□ -0.222e-21■■■■□ 22.5
DDX55Q8NHQ9 EFNA1-202ENST00000368407 1926 ntAPPRIS P1 TSL 1 (best) BASIC29.97■■■□□ 2.394e-16■■■■□ 22.4
DDX55Q8NHQ9 EFNA1-201ENST00000368406 1444 ntTSL 1 (best) BASIC15.14■□□□□ 0.014e-16■■■■□ 22.4
DDX55Q8NHQ9 TPRG1L-201ENST00000344579 2189 ntTSL 1 (best) BASIC33.23■■■□□ 2.915e-7■■■■□ 22.4
DDX55Q8NHQ9 TPRG1L-202ENST00000378344 2414 ntAPPRIS P1 TSL 2 BASIC28.66■■■□□ 2.185e-7■■■■□ 22.4
DDX55Q8NHQ9 AL020996.2-201ENST00000559265 568 ntTSL 424.18■■□□□ 1.461e-14■■■■□ 22.4
DDX55Q8NHQ9 SELENON-203ENST00000374315 4212 ntAPPRIS ALT2 TSL 5 BASIC15.56■□□□□ 0.081e-14■■■■□ 22.4
DDX55Q8NHQ9 SELENON-202ENST00000361547 4334 ntAPPRIS P4 TSL 1 (best) BASIC15.17■□□□□ 0.021e-14■■■■□ 22.4
DDX55Q8NHQ9 SELENON-201ENST00000354177 4227 ntAPPRIS ALT2 TSL 5 BASIC14.73□□□□□ -0.051e-14■■■■□ 22.4
DDX55Q8NHQ9 AL020996.2-202ENST00000527604 334 ntAPPRIS P1 TSL 5 BASIC9.92□□□□□ -0.821e-14■■■■□ 22.4
DDX55Q8NHQ9 SELENON-205ENST00000630065 2994 ntTSL 1 (best) BASIC9.77□□□□□ -0.851e-14■■■■□ 22.4
DDX55Q8NHQ9 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC18.73■□□□□ 0.592e-7■■■■□ 22.4
DDX55Q8NHQ9 NPTN-201ENST00000345330 2444 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.022e-7■■■■□ 22.4
DDX55Q8NHQ9 ORM2-201ENST00000431067 760 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.344e-12■■■■□ 22.3
DDX55Q8NHQ9 FUS-212ENST00000569760 639 ntTSL 228.99■■■□□ 2.234e-17■■■■□ 22.3
DDX55Q8NHQ9 FUS-209ENST00000566605 1787 ntTSL 1 (best)28.77■■■□□ 2.24e-17■■■■□ 22.3
DDX55Q8NHQ9 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC28.11■■■□□ 2.094e-17■■■■□ 22.3
DDX55Q8NHQ9 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC26.79■■□□□ 1.884e-17■■■■□ 22.3
DDX55Q8NHQ9 FUS-204ENST00000483853 778 ntTSL 226.41■■□□□ 1.824e-17■■■■□ 22.3
DDX55Q8NHQ9 FUS-201ENST00000254108 5119 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.374e-17■■■■□ 22.3
DDX55Q8NHQ9 FUS-206ENST00000487509 4920 ntTSL 215.34■□□□□ 0.054e-17■■■■□ 22.3
DDX55Q8NHQ9 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC26.28■■□□□ 1.83e-6■■■■□ 22.3
DDX55Q8NHQ9 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC25.48■■□□□ 1.673e-6■■■■□ 22.3
DDX55Q8NHQ9 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC23.38■■□□□ 1.333e-6■■■■□ 22.3
DDX55Q8NHQ9 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.223e-6■■■■□ 22.3
DDX55Q8NHQ9 NAE1-210ENST00000563221 532 ntTSL 29.74□□□□□ -0.853e-6■■■■□ 22.3
DDX55Q8NHQ9 NAE1-219ENST00000568672 523 ntTSL 29.74□□□□□ -0.853e-6■■■■□ 22.3
DDX55Q8NHQ9 NAE1-207ENST00000562428 473 ntTSL 56.35□□□□□ -1.393e-6■■■■□ 22.3
DDX55Q8NHQ9 NAE1-216ENST00000566663 576 ntTSL 35.66□□□□□ -1.53e-6■■■■□ 22.3
DDX55Q8NHQ9 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC23.99■■□□□ 1.431e-7■■■■□ 22.3
DDX55Q8NHQ9 VPS4B-201ENST00000238497 3324 ntAPPRIS P1 TSL 1 (best) BASIC10.13□□□□□ -0.793e-7■■■■□ 22.2
DDX55Q8NHQ9 TFDP1-201ENST00000375370 2648 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.072e-6■■■■□ 22.2
DDX55Q8NHQ9 CNOT1-221ENST00000569924 493 ntTSL 23.64□□□□□ -1.833e-12■■■■□ 22.2
DDX55Q8NHQ9 THOC6-210ENST00000576143 960 ntTSL 327.08■■□□□ 1.932e-12■■■■□ 22.2
DDX55Q8NHQ9 THOC6-205ENST00000573704 991 ntTSL 527.08■■□□□ 1.932e-12■■■■□ 22.2
DDX55Q8NHQ9 THOC6-208ENST00000574957 1143 ntTSL 1 (best)26.57■■□□□ 1.842e-12■■■■□ 22.2
DDX55Q8NHQ9 THOC6-206ENST00000574498 788 ntTSL 322.49■■□□□ 1.192e-12■■■■□ 22.2
DDX55Q8NHQ9 THOC6-204ENST00000571057 988 ntTSL 1 (best)21.18■□□□□ 0.982e-12■■■■□ 22.2
DDX55Q8NHQ9 THOC6-203ENST00000571046 614 ntTSL 219.37■□□□□ 0.692e-12■■■■□ 22.2
DDX55Q8NHQ9 C17orf99-203ENST00000586029 694 ntAPPRIS ALT2 TSL 316.33■□□□□ 0.22e-12■■■■□ 22.2
DDX55Q8NHQ9 C17orf99-202ENST00000451352 2404 ntTSL 215.38■□□□□ 0.052e-12■■■■□ 22.2
DDX55Q8NHQ9 C17orf99-204ENST00000586246 371 ntTSL 515.01□□□□□ -0.012e-12■■■■□ 22.2
DDX55Q8NHQ9 C17orf99-201ENST00000340363 984 ntAPPRIS P2 TSL 1 (best) BASIC13.65□□□□□ -0.222e-12■■■■□ 22.2
Retrieved 100 of 15,504 protein–RNA pairs in 87 ms