Protein–RNA interactions for Protein: P49238

CX3CR1, CX3C chemokine receptor 1, humanhuman

Predictions only

Length 355 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CR1P49238 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC20.44■□□□□ 0.86
CX3CR1P49238 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC20.44■□□□□ 0.86
CX3CR1P49238 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
CX3CR1P49238 AC141586.4-201ENST00000624558 1573 ntBASIC20.43■□□□□ 0.86
CX3CR1P49238 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC20.43■□□□□ 0.86
CX3CR1P49238 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CX3CR1P49238 RPS2P7-201ENST00000447334 885 ntBASIC20.43■□□□□ 0.86
CX3CR1P49238 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC20.43■□□□□ 0.86
CX3CR1P49238 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CX3CR1P49238 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
CX3CR1P49238 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC20.43■□□□□ 0.86
CX3CR1P49238 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
CX3CR1P49238 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CX3CR1P49238 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
CX3CR1P49238 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC20.42■□□□□ 0.86
CX3CR1P49238 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC20.42■□□□□ 0.86
CX3CR1P49238 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CX3CR1P49238 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CX3CR1P49238 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CX3CR1P49238 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC20.42■□□□□ 0.86
CX3CR1P49238 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC20.42■□□□□ 0.86
CX3CR1P49238 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CX3CR1P49238 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
CX3CR1P49238 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC20.41■□□□□ 0.86
CX3CR1P49238 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CX3CR1P49238 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
CX3CR1P49238 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CX3CR1P49238 TMEM202-AS1-202ENST00000565181 2325 ntBASIC20.41■□□□□ 0.86
CX3CR1P49238 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CX3CR1P49238 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CX3CR1P49238 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
CX3CR1P49238 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CX3CR1P49238 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CX3CR1P49238 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
CX3CR1P49238 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC20.4■□□□□ 0.86
CX3CR1P49238 MIR6765-201ENST00000614092 87 ntBASIC20.4■□□□□ 0.86
CX3CR1P49238 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC20.4■□□□□ 0.86
CX3CR1P49238 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
CX3CR1P49238 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.86
CX3CR1P49238 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC20.39■□□□□ 0.86
CX3CR1P49238 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC20.39■□□□□ 0.86
CX3CR1P49238 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.85
CX3CR1P49238 DUX4L9-201ENST00000449051 1259 ntBASIC20.39■□□□□ 0.85
CX3CR1P49238 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.85
CX3CR1P49238 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC20.39■□□□□ 0.85
CX3CR1P49238 U85056.1-201ENST00000616429 682 ntBASIC20.39■□□□□ 0.85
CX3CR1P49238 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CX3CR1P49238 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
CX3CR1P49238 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CX3CR1P49238 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
CX3CR1P49238 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC20.38■□□□□ 0.85
CX3CR1P49238 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC20.38■□□□□ 0.85
CX3CR1P49238 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC20.38■□□□□ 0.85
CX3CR1P49238 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CX3CR1P49238 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC20.38■□□□□ 0.85
CX3CR1P49238 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC20.38■□□□□ 0.85
CX3CR1P49238 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
CX3CR1P49238 HLA-L-211ENST00000482052 1765 ntBASIC20.38■□□□□ 0.85
CX3CR1P49238 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC20.37■□□□□ 0.85
CX3CR1P49238 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC20.37■□□□□ 0.85
CX3CR1P49238 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
CX3CR1P49238 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC20.37■□□□□ 0.85
CX3CR1P49238 IDNK-203ENST00000405990 629 ntTSL 2 BASIC20.37■□□□□ 0.85
CX3CR1P49238 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC20.37■□□□□ 0.85
CX3CR1P49238 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC20.37■□□□□ 0.85
CX3CR1P49238 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
CX3CR1P49238 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
CX3CR1P49238 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CX3CR1P49238 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CX3CR1P49238 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CX3CR1P49238 AC087393.1-201ENST00000582896 145 ntBASIC20.36■□□□□ 0.85
CX3CR1P49238 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
CX3CR1P49238 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
CX3CR1P49238 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
CX3CR1P49238 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
CX3CR1P49238 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
CX3CR1P49238 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CX3CR1P49238 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC20.35■□□□□ 0.85
CX3CR1P49238 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CX3CR1P49238 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
CX3CR1P49238 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
CX3CR1P49238 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC20.35■□□□□ 0.85
CX3CR1P49238 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CX3CR1P49238 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
CX3CR1P49238 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC20.35■□□□□ 0.85
CX3CR1P49238 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
CX3CR1P49238 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CX3CR1P49238 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CX3CR1P49238 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
CX3CR1P49238 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC20.34■□□□□ 0.85
CX3CR1P49238 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CX3CR1P49238 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CX3CR1P49238 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CX3CR1P49238 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC20.34■□□□□ 0.85
CX3CR1P49238 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC20.34■□□□□ 0.85
CX3CR1P49238 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC20.34■□□□□ 0.85
CX3CR1P49238 BRD4-212ENST00000630599 726 ntTSL 2 BASIC20.34■□□□□ 0.85
CX3CR1P49238 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
CX3CR1P49238 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CX3CR1P49238 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 20.6 ms