Protein–RNA interactions for Protein: P30531

SLC6A1, Sodium- and chloride-dependent GABA transporter 1, humanhuman

Predictions only

Length 599 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC6A1P30531 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SLC6A1P30531 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC20.1■□□□□ 0.81
SLC6A1P30531 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC20.1■□□□□ 0.81
SLC6A1P30531 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SLC6A1P30531 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SLC6A1P30531 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
SLC6A1P30531 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SLC6A1P30531 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
SLC6A1P30531 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
SLC6A1P30531 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
SLC6A1P30531 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
SLC6A1P30531 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC20.09■□□□□ 0.81
SLC6A1P30531 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
SLC6A1P30531 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
SLC6A1P30531 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC20.09■□□□□ 0.81
SLC6A1P30531 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
SLC6A1P30531 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC20.09■□□□□ 0.81
SLC6A1P30531 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC20.09■□□□□ 0.81
SLC6A1P30531 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
SLC6A1P30531 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
SLC6A1P30531 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC20.09■□□□□ 0.81
SLC6A1P30531 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
SLC6A1P30531 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC20.08■□□□□ 0.81
SLC6A1P30531 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
SLC6A1P30531 SHD-204ENST00000599689 1729 ntTSL 5 BASIC20.08■□□□□ 0.81
SLC6A1P30531 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
SLC6A1P30531 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
SLC6A1P30531 RPS2-202ENST00000526522 924 ntTSL 2 BASIC20.08■□□□□ 0.81
SLC6A1P30531 EFS-203ENST00000429593 2610 ntTSL 2 BASIC20.08■□□□□ 0.8
SLC6A1P30531 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
SLC6A1P30531 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC20.08■□□□□ 0.8
SLC6A1P30531 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
SLC6A1P30531 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
SLC6A1P30531 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
SLC6A1P30531 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC20.07■□□□□ 0.8
SLC6A1P30531 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SLC6A1P30531 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC20.07■□□□□ 0.8
SLC6A1P30531 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SLC6A1P30531 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC20.07■□□□□ 0.8
SLC6A1P30531 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
SLC6A1P30531 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SLC6A1P30531 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SLC6A1P30531 CHML-204ENST00000638121 920 ntTSL 2 BASIC20.07■□□□□ 0.8
SLC6A1P30531 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SLC6A1P30531 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
SLC6A1P30531 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SLC6A1P30531 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SLC6A1P30531 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC20.07■□□□□ 0.8
SLC6A1P30531 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
SLC6A1P30531 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
SLC6A1P30531 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
SLC6A1P30531 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SLC6A1P30531 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SLC6A1P30531 USP48-205ENST00000421625 2818 ntTSL 2 BASIC20.06■□□□□ 0.8
SLC6A1P30531 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
SLC6A1P30531 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SLC6A1P30531 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
SLC6A1P30531 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SLC6A1P30531 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SLC6A1P30531 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC20.05■□□□□ 0.8
SLC6A1P30531 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
SLC6A1P30531 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
SLC6A1P30531 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SLC6A1P30531 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC20.05■□□□□ 0.8
SLC6A1P30531 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
SLC6A1P30531 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SLC6A1P30531 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC20.05■□□□□ 0.8
SLC6A1P30531 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC20.05■□□□□ 0.8
SLC6A1P30531 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
SLC6A1P30531 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC20.05■□□□□ 0.8
SLC6A1P30531 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
SLC6A1P30531 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
SLC6A1P30531 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SLC6A1P30531 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC20.04■□□□□ 0.8
SLC6A1P30531 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
SLC6A1P30531 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
SLC6A1P30531 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC20.04■□□□□ 0.8
SLC6A1P30531 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
SLC6A1P30531 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
SLC6A1P30531 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SLC6A1P30531 HES6-205ENST00000409356 528 ntTSL 2 BASIC20.03■□□□□ 0.8
SLC6A1P30531 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC20.03■□□□□ 0.8
SLC6A1P30531 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
SLC6A1P30531 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC20.03■□□□□ 0.8
SLC6A1P30531 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC20.03■□□□□ 0.8
SLC6A1P30531 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SLC6A1P30531 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
SLC6A1P30531 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
SLC6A1P30531 AC137767.1-201ENST00000602918 1920 ntBASIC20.02■□□□□ 0.8
SLC6A1P30531 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC20.02■□□□□ 0.8
SLC6A1P30531 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC20.02■□□□□ 0.8
SLC6A1P30531 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
SLC6A1P30531 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
SLC6A1P30531 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
SLC6A1P30531 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.79
SLC6A1P30531 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC20.01■□□□□ 0.79
SLC6A1P30531 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
SLC6A1P30531 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
SLC6A1P30531 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC20.01■□□□□ 0.79
SLC6A1P30531 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 19.5 ms