Protein–RNA interactions for Protein: P23246

SFPQ, Splicing factor, proline- and glutamine-rich, humanhuman

Known RBP eCLIP

Length 707 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SFPQP23246 SEPT9-230ENST00000590586 572 ntTSL 422.73■■□□□ 1.232e-7■■■□□ 15.7
SFPQP23246 AFF1-205ENST00000504956 1668 ntTSL 217.47■□□□□ 0.392e-6■■■□□ 15.6
SFPQP23246 AFF1-207ENST00000511442 463 ntTSL 32.66□□□□□ -1.982e-6■■■□□ 15.6
SFPQP23246 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC23.98■■□□□ 1.433e-6■■■□□ 15.6
SFPQP23246 REV1-203ENST00000413697 4727 ntTSL 222.43■■□□□ 1.183e-6■■■□□ 15.6
SFPQP23246 REV1-202ENST00000393445 4686 ntAPPRIS ALT1 TSL 1 (best) BASIC16.37■□□□□ 0.213e-6■■■□□ 15.6
SFPQP23246 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC20.87■□□□□ 0.936e-7■■■□□ 15.6
SFPQP23246 FARP1-214ENST00000595437 4926 ntTSL 1 (best) BASIC17.6■□□□□ 0.416e-7■■■□□ 15.6
SFPQP23246 FARP1-201ENST00000319562 10262 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.136e-7■■■□□ 15.6
SFPQP23246 FARP1-219ENST00000596580 13532 ntTSL 5 BASIC9.37□□□□□ -0.916e-7■■■□□ 15.6
SFPQP23246 SLC16A3-210ENST00000580189 872 ntTSL 521.37■■□□□ 1.019e-11■■■□□ 15.6
SFPQP23246 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC30.37■■■□□ 2.458e-7■■■□□ 15.5
SFPQP23246 MACROD1-208ENST00000545464 899 ntTSL 327.59■■■□□ 2.018e-7■■■□□ 15.5
SFPQP23246 MACROD1-206ENST00000542359 459 ntTSL 317.45■□□□□ 0.388e-7■■■□□ 15.5
SFPQP23246 CAPN15-205ENST00000567216 3174 ntTSL 1 (best)22.87■■□□□ 1.257e-7■■■□□ 15.5
SFPQP23246 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC17.18■□□□□ 0.341e-6■■■□□ 15.5
SFPQP23246 PRKCA-203ENST00000578063 1733 ntTSL 1 (best)20.31■□□□□ 0.842e-6■■■□□ 15.5
SFPQP23246 PRKCA-201ENST00000284384 2718 ntTSL 58.9□□□□□ -0.982e-6■■■□□ 15.5
SFPQP23246 PRKCA-202ENST00000413366 8751 ntAPPRIS P1 TSL 1 (best) BASIC8.62□□□□□ -1.032e-6■■■□□ 15.5
SFPQP23246 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC30.7■■■□□ 2.51e-7■■■□□ 15.5
SFPQP23246 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC24.68■■□□□ 1.541e-7■■■□□ 15.5
SFPQP23246 HPN-207ENST00000599363 1828 ntTSL 524.42■■□□□ 1.51e-7■■■□□ 15.5
SFPQP23246 TEAD1-204ENST00000527376 477 ntTSL 324.17■■□□□ 1.461e-7■■■□□ 15.5
SFPQP23246 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.191e-7■■■□□ 15.5
SFPQP23246 HPN-208ENST00000600390 564 ntTSL 421.26■□□□□ 0.991e-7■■■□□ 15.5
SFPQP23246 COQ8A-209ENST00000489044 941 ntTSL 320.67■□□□□ 0.91e-7■■■□□ 15.5
SFPQP23246 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.831e-7■■■□□ 15.5
SFPQP23246 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC19.34■□□□□ 0.691e-7■■■□□ 15.5
SFPQP23246 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.671e-7■■■□□ 15.5
SFPQP23246 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.531e-7■■■□□ 15.5
SFPQP23246 COQ8A-205ENST00000478406 3612 ntTSL 216.81■□□□□ 0.281e-7■■■□□ 15.5
SFPQP23246 TET3-201ENST00000305799 5174 ntTSL 5 BASIC16.42■□□□□ 0.221e-7■■■□□ 15.5
SFPQP23246 COQ8A-203ENST00000366779 5523 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.221e-7■■■□□ 15.5
SFPQP23246 HPN-206ENST00000597419 1212 ntTSL 5 BASIC15.88■□□□□ 0.131e-7■■■□□ 15.5
SFPQP23246 TET3-202ENST00000409262 11388 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.631e-7■■■□□ 15.5
SFPQP23246 TEAD1-205ENST00000527575 3063 ntTSL 5 BASIC7.93□□□□□ -1.141e-7■■■□□ 15.5
SFPQP23246 TEAD1-201ENST00000334310 3075 ntTSL 1 (best) BASIC7.93□□□□□ -1.141e-7■■■□□ 15.5
SFPQP23246 SIAH1-203ENST00000394725 2147 ntAPPRIS P3 TSL 1 (best) BASIC31.83■■■□□ 2.692e-6■■■□□ 15.5
SFPQP23246 GATAD2A-209ENST00000448576 271 ntTSL 331.8■■■□□ 2.682e-6■■■□□ 15.5
SFPQP23246 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC26.89■■□□□ 1.92e-6■■■□□ 15.5
SFPQP23246 GATAD2A-210ENST00000457895 729 ntTSL 224.27■■□□□ 1.482e-6■■■□□ 15.5
SFPQP23246 KIAA0232-205ENST00000508423 700 ntTSL 223.94■■□□□ 1.422e-6■■■□□ 15.5
SFPQP23246 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC22.73■■□□□ 1.232e-6■■■□□ 15.5
SFPQP23246 GATAD2A-212ENST00000494516 640 ntTSL 222.65■■□□□ 1.222e-6■■■□□ 15.5
SFPQP23246 GATAD2A-204ENST00000417582 655 ntTSL 222.22■■□□□ 1.152e-6■■■□□ 15.5
SFPQP23246 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC22.17■■□□□ 1.142e-6■■■□□ 15.5
SFPQP23246 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC22.08■■□□□ 1.132e-6■■■□□ 15.5
SFPQP23246 GATAD2A-213ENST00000609040 1652 ntTSL 221.37■■□□□ 1.012e-6■■■□□ 15.5
SFPQP23246 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC21.33■■□□□ 1.012e-6■■■□□ 15.5
SFPQP23246 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.982e-6■■■□□ 15.5
SFPQP23246 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC20.54■□□□□ 0.882e-6■■■□□ 15.5
SFPQP23246 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC20.44■□□□□ 0.862e-6■■■□□ 15.5
SFPQP23246 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC20.15■□□□□ 0.822e-6■■■□□ 15.5
SFPQP23246 ACSF3-213ENST00000542688 2024 ntTSL 520■□□□□ 0.792e-6■■■□□ 15.5
SFPQP23246 MSI2-210ENST00000579505 577 ntTSL 319.78■□□□□ 0.764e-6■■■□□ 15.5
SFPQP23246 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.662e-6■■■□□ 15.5
SFPQP23246 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.592e-6■■■□□ 15.5
SFPQP23246 CAPZB-207ENST00000459967 579 ntTSL 317.9■□□□□ 0.462e-6■■■□□ 15.5
SFPQP23246 CAPZB-208ENST00000482808 660 ntTSL 217.44■□□□□ 0.382e-6■■■□□ 15.5
SFPQP23246 ZNF562-203ENST00000585350 577 ntTSL 517.06■□□□□ 0.322e-6■■■□□ 15.5
SFPQP23246 AGPAT3-205ENST00000398063 5767 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.212e-6■■■□□ 15.5
SFPQP23246 RTN4-202ENST00000337526 4790 ntTSL 1 (best) BASIC16.13■□□□□ 0.172e-6■■■□□ 15.5
SFPQP23246 CAPZB-201ENST00000264202 858 ntAPPRIS P3 TSL 1 (best) BASIC15.61■□□□□ 0.092e-6■■■□□ 15.5
SFPQP23246 AGPAT3-202ENST00000327505 3589 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.072e-6■■■□□ 15.5
SFPQP23246 AGPAT3-204ENST00000398061 3595 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.072e-6■■■□□ 15.5
SFPQP23246 ACSF3-201ENST00000317447 3664 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.022e-6■■■□□ 15.5
SFPQP23246 RALGDS-203ENST00000372062 3596 ntAPPRIS ALT2 TSL 2 BASIC15.14■□□□□ 0.012e-6■■■□□ 15.5
SFPQP23246 ACSF3-215ENST00000544543 883 ntTSL 514.72□□□□□ -0.052e-6■■■□□ 15.5
SFPQP23246 ACSF3-218ENST00000614302 3751 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.082e-6■■■□□ 15.5
SFPQP23246 ACSF3-206ENST00000537116 2496 ntTSL 214.25□□□□□ -0.132e-6■■■□□ 15.5
SFPQP23246 AGPAT3-207ENST00000445582 582 ntTSL 313.97□□□□□ -0.172e-6■■■□□ 15.5
SFPQP23246 ACSF3-216ENST00000562204 581 ntTSL 313.89□□□□□ -0.192e-6■■■□□ 15.5
SFPQP23246 SIAH1-207ENST00000568007 2683 ntTSL 1 (best)13.75□□□□□ -0.212e-6■■■□□ 15.5
SFPQP23246 YWHAZ-214ENST00000517727 876 ntTSL 313.54□□□□□ -0.242e-6■■■□□ 15.5
SFPQP23246 AGPAT3-208ENST00000448287 454 ntTSL 313.35□□□□□ -0.272e-6■■■□□ 15.5
SFPQP23246 RTN4-211ENST00000438462 656 ntTSL 512.56□□□□□ -0.42e-6■■■□□ 15.5
SFPQP23246 JPX-206ENST00000602737 544 ntTSL 311.64□□□□□ -0.552e-6■■■□□ 15.5
SFPQP23246 FAT1-201ENST00000441802 14786 ntAPPRIS P2 TSL 5 BASIC10.46□□□□□ -0.742e-6■■■□□ 15.5
SFPQP23246 RTN4-206ENST00000394611 4161 ntTSL 1 (best) BASIC10.34□□□□□ -0.752e-6■■■□□ 15.5
SFPQP23246 FAT1-212ENST00000614102 14758 ntAPPRIS ALT1 TSL 5 BASIC9.71□□□□□ -0.852e-6■■■□□ 15.5
SFPQP23246 ZNF562-208ENST00000590155 1712 ntAPPRIS ALT2 TSL 2 BASIC9.39□□□□□ -0.912e-6■■■□□ 15.5
SFPQP23246 SIAH1-204ENST00000563745 589 ntTSL 49.25□□□□□ -0.932e-6■■■□□ 15.5
SFPQP23246 BMPR2-202ENST00000374580 11461 ntAPPRIS P1 TSL 1 (best) BASIC8.89□□□□□ -0.992e-6■■■□□ 15.5
SFPQP23246 JPX-202ENST00000415215 475 ntTSL 58.5□□□□□ -1.052e-6■■■□□ 15.5
SFPQP23246 ZNF562-207ENST00000589542 491 ntTSL 38.42□□□□□ -1.062e-6■■■□□ 15.5
SFPQP23246 KIAA0232-202ENST00000425103 7771 ntAPPRIS P1 TSL 1 (best) BASIC8.38□□□□□ -1.072e-6■■■□□ 15.5
SFPQP23246 ZNF562-202ENST00000453372 2111 ntAPPRIS P3 TSL 3 BASIC8.12□□□□□ -1.112e-6■■■□□ 15.5
SFPQP23246 RTN4-203ENST00000357376 4110 ntTSL 1 (best) BASIC7.99□□□□□ -1.132e-6■■■□□ 15.5
SFPQP23246 ZNF562-206ENST00000588653 585 ntTSL 27.9□□□□□ -1.142e-6■■■□□ 15.5
SFPQP23246 KIAA0232-201ENST00000307659 7841 ntAPPRIS P1 TSL 1 (best) BASIC7.6□□□□□ -1.192e-6■■■□□ 15.5
SFPQP23246 ZNF562-204ENST00000585688 1475 ntTSL 25.84□□□□□ -1.472e-6■■■□□ 15.5
SFPQP23246 ZNF562-201ENST00000293648 12380 ntTSL 2 BASIC5.8□□□□□ -1.482e-6■■■□□ 15.5
SFPQP23246 BMPR2-201ENST00000374574 9683 ntTSL 2 BASIC5.59□□□□□ -1.512e-6■■■□□ 15.5
SFPQP23246 MSI2-216ENST00000582772 398 ntTSL 35.57□□□□□ -1.524e-6■■■□□ 15.5
SFPQP23246 KIAA0232-204ENST00000503278 563 ntTSL 45.18□□□□□ -1.582e-6■■■□□ 15.5
SFPQP23246 RTN4-209ENST00000405240 4061 ntTSL 1 (best) BASIC4.43□□□□□ -1.72e-6■■■□□ 15.5
SFPQP23246 ZNF562-205ENST00000587392 583 ntTSL 2 BASIC4.3□□□□□ -1.722e-6■■■□□ 15.5
SFPQP23246 RTN4-208ENST00000404909 4102 ntTSL 1 (best) BASIC4.06□□□□□ -1.762e-6■■■□□ 15.5
SFPQP23246 CLASP1-201ENST00000263710 8092 ntTSL 5 BASIC11.78□□□□□ -0.522e-6■■■□□ 15.5
SFPQP23246 CLASP1-203ENST00000409078 8002 ntAPPRIS P1 TSL 5 BASIC10.36□□□□□ -0.752e-6■■■□□ 15.5
Retrieved 100 of 4,991 protein–RNA pairs in 146.1 ms