RNA–Protein interactions for RNA: ENST00000578063.5

PRKCA-203, Transcript of protein kinase C alpha, humanhuman

TSL 1 (best)

Gene PRKCA, Length 1,733 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKCA-203ENST00000578063 NISCHQ9Y2I1 1504 aa42.61■■■■■ 4.41
PRKCA-203ENST00000578063 CCDC180Q9P1Z9 1646 aa37.31■■■■□ 3.56
PRKCA-203ENST00000578063 ZCCHC6Q5VYS8 1495 aaKnown RBP35.77■■■■□ 3.32
PRKCA-203ENST00000578063 ABCC9O60706 1549 aa35.37■■■■□ 3.25
PRKCA-203ENST00000578063 DCAF1Q9Y4B6 1507 aa35.3■■■■□ 3.24
PRKCA-203ENST00000578063 DCAF8L2P0C7V8 631 aa35.11■■■■□ 3.21
PRKCA-203ENST00000578063 MYO15BQ96JP2 1530 aa35■■■■□ 3.19
PRKCA-203ENST00000578063 NACADO15069 1562 aa34.8■■■■□ 3.16
PRKCA-203ENST00000578063 RB1CC1Q8TDY2 1594 aa34.54■■■■□ 3.12
PRKCA-203ENST00000578063 SHROOM4Q9ULL8 1493 aa34.46■■■■□ 3.11
PRKCA-203ENST00000578063 SCRIBQ14160 1630 aa34.19■■■■□ 3.06
PRKCA-203ENST00000578063 UNC13AQ9UPW8 1703 aa33.73■■■□□ 2.99
PRKCA-203ENST00000578063 BICRAQ9NZM4 1560 aa33.44■■■□□ 2.94
PRKCA-203ENST00000578063 PABPN1Q86U42 306 aaKnown RBP eCLIP33.25■■■□□ 2.91
PRKCA-203ENST00000578063 CECR2Q9BXF3 1484 aa33.06■■■□□ 2.88
PRKCA-203ENST00000578063 SUPT5HO00267 1087 aaKnown RBP33.05■■■□□ 2.88
PRKCA-203ENST00000578063 BAZ1AQ9NRL2 1556 aaPredicted RBP32.95■■■□□ 2.87
PRKCA-203ENST00000578063 RSF1Q96T23 1441 aaPredicted RBP32.93■■■□□ 2.86
PRKCA-203ENST00000578063 MROH2BQ7Z745 1585 aa32.86■■■□□ 2.85
PRKCA-203ENST00000578063 SMARCA4P51532 1647 aa32.8■■■□□ 2.84
PRKCA-203ENST00000578063 WIZO95785 1651 aa32.56■■■□□ 2.8
PRKCA-203ENST00000578063 EIF4G1Q04637 1599 aaKnown RBP32.48■■■□□ 2.79
PRKCA-203ENST00000578063 PEG3Q9GZU2 1588 aa32.45■■■□□ 2.79
PRKCA-203ENST00000578063 SMARCA2P51531 1590 aa32.33■■■□□ 2.77
PRKCA-203ENST00000578063 ATAD2BQ9ULI0 1458 aa32.32■■■□□ 2.76
PRKCA-203ENST00000578063 TOP2AP11388 1531 aaKnown RBP32.31■■■□□ 2.76
PRKCA-203ENST00000578063 BAZ1BQ9UIG0 1483 aaKnown RBP32.13■■■□□ 2.73
PRKCA-203ENST00000578063 NCAPD3P42695 1498 aa32.1■■■□□ 2.73
PRKCA-203ENST00000578063 HMGXB3Q12766 1538 aa32.07■■■□□ 2.72
PRKCA-203ENST00000578063 CC2D2AQ9P2K1 1620 aa32.03■■■□□ 2.72
PRKCA-203ENST00000578063 CCDC88BA6NC98 1476 aa31.91■■■□□ 2.7
PRKCA-203ENST00000578063 CHIC1Q5VXU3 224 aa31.56■■■□□ 2.64
PRKCA-203ENST00000578063 DNAJC5BQ9UF47 199 aa31.38■■■□□ 2.61
PRKCA-203ENST00000578063 CFTRP13569 1480 aa31.32■■■□□ 2.6
PRKCA-203ENST00000578063 CADPSQ9ULU8 1353 aa31.24■■■□□ 2.59
PRKCA-203ENST00000578063 TRIM41Q8WV44 630 aa31.15■■■□□ 2.58
PRKCA-203ENST00000578063 ABCC8Q09428 1581 aa31.14■■■□□ 2.58
PRKCA-203ENST00000578063 PRDM2Q13029 1718 aa31.13■■■□□ 2.57
PRKCA-203ENST00000578063 LAMC3Q9Y6N6 1575 aa31.06■■■□□ 2.56
PRKCA-203ENST00000578063 WRNQ14191 1432 aaPredicted RBP eCLIP31.04■■■□□ 2.56
PRKCA-203ENST00000578063 NESP48681 1621 aa30.96■■■□□ 2.55
PRKCA-203ENST00000578063 FANCD2Q9BXW9 1451 aa30.89■■■□□ 2.54
PRKCA-203ENST00000578063 SYNJ1O43426 1573 aa30.89■■■□□ 2.53
PRKCA-203ENST00000578063 PDS5BQ9NTI5 1447 aa30.82■■■□□ 2.52
PRKCA-203ENST00000578063 TOP2BQ02880 1626 aa30.82■■■□□ 2.52
PRKCA-203ENST00000578063 BIVM-ERCC5R4GMW8 1640 aa30.79■■■□□ 2.52
PRKCA-203ENST00000578063 CUX1P39880 1505 aa30.76■■■□□ 2.51
PRKCA-203ENST00000578063 CEP164Q9UPV0 1460 aa30.74■■■□□ 2.51
PRKCA-203ENST00000578063 KIF21AQ7Z4S6 1674 aa30.61■■■□□ 2.49
PRKCA-203ENST00000578063 DNMBPQ6XZF7 1577 aa30.6■■■□□ 2.49
PRKCA-203ENST00000578063 EEA1Q15075 1411 aa30.54■■■□□ 2.48
PRKCA-203ENST00000578063 TOPBP1Q92547 1522 aa30.53■■■□□ 2.48
PRKCA-203ENST00000578063 SOGA1O94964 1423 aa30.51■■■□□ 2.48
PRKCA-203ENST00000578063 URB2Q14146 1524 aaKnown RBP30.5■■■□□ 2.47
PRKCA-203ENST00000578063 FAM9AQ8IZU1 332 aaPredicted RBP30.49■■■□□ 2.47
PRKCA-203ENST00000578063 FGD5Q6ZNL6 1462 aa30.47■■■□□ 2.47
PRKCA-203ENST00000578063 MRC2Q9UBG0 1479 aa30.43■■■□□ 2.46
PRKCA-203ENST00000578063 ERCC6Q03468 1493 aa30.4■■■□□ 2.46
PRKCA-203ENST00000578063 RUSC2Q8N2Y8 1516 aa30.37■■■□□ 2.45
PRKCA-203ENST00000578063 POLA1P09884 1462 aaPredicted RBP30.37■■■□□ 2.45
PRKCA-203ENST00000578063 CSRNP3Q8WYN3 585 aa30.29■■■□□ 2.44
PRKCA-203ENST00000578063 KIF27Q86VH2 1401 aa30.29■■■□□ 2.44
PRKCA-203ENST00000578063 WDR62O43379 1518 aa30.29■■■□□ 2.44
PRKCA-203ENST00000578063 LOC105371045A0A1W2PR82 267 aa30.26■■■□□ 2.43
PRKCA-203ENST00000578063 ABCA10Q8WWZ4 1543 aa30.24■■■□□ 2.43
PRKCA-203ENST00000578063 CUX2O14529 1486 aa30.23■■■□□ 2.43
PRKCA-203ENST00000578063 THOC2Q8NI27 1593 aaKnown RBP30.22■■■□□ 2.43
PRKCA-203ENST00000578063 RAD54L2Q9Y4B4 1467 aa30.21■■■□□ 2.43
PRKCA-203ENST00000578063 WDR97A6NE52 1622 aa30.13■■■□□ 2.41
PRKCA-203ENST00000578063 KIF21BO75037 1637 aa30.11■■■□□ 2.41
PRKCA-203ENST00000578063 TARBP1Q13395 1621 aaKnown RBP30.09■■■□□ 2.41
PRKCA-203ENST00000578063 GOLGA3Q08378 1498 aa30.06■■■□□ 2.4
PRKCA-203ENST00000578063 IFT140Q96RY7 1462 aa30.04■■■□□ 2.4
PRKCA-203ENST00000578063 PRXQ9BXM0 1461 aa30.02■■■□□ 2.4
PRKCA-203ENST00000578063 EHMT2Q96KQ7 1210 aa30■■■□□ 2.39
PRKCA-203ENST00000578063 ABCA5Q8WWZ7 1642 aa29.99■■■□□ 2.39
PRKCA-203ENST00000578063 IGF1RP08069 1367 aa29.99■■■□□ 2.39
PRKCA-203ENST00000578063 ERICH3Q5RHP9 1530 aa29.98■■■□□ 2.39
PRKCA-203ENST00000578063 TDRD9Q8NDG6 1382 aaKnown RBP29.93■■■□□ 2.38
PRKCA-203ENST00000578063 GAPVD1Q14C86 1478 aa29.93■■■□□ 2.38
PRKCA-203ENST00000578063 RAPGEF2Q9Y4G8 1499 aa29.93■■■□□ 2.38
PRKCA-203ENST00000578063 TNIKQ9UKE5 1360 aa29.91■■■□□ 2.38
PRKCA-203ENST00000578063 CARMIL1Q5VZK9 1371 aa29.86■■■□□ 2.37
PRKCA-203ENST00000578063 UBTFP17480 764 aaKnown RBP29.85■■■□□ 2.37
PRKCA-203ENST00000578063 CUL7Q14999 1698 aa29.85■■■□□ 2.37
PRKCA-203ENST00000578063 ZNF608Q9ULD9 1512 aaPredicted RBP29.79■■■□□ 2.36
PRKCA-203ENST00000578063 AQRO60306 1485 aaKnown RBP eCLIP29.79■■■□□ 2.36
PRKCA-203ENST00000578063 PBRM1Q86U86 1689 aa29.76■■■□□ 2.35
PRKCA-203ENST00000578063 GRIN2BQ13224 1484 aa29.75■■■□□ 2.35
PRKCA-203ENST00000578063 EIF4G3O43432 1585 aaKnown RBP29.74■■■□□ 2.35
PRKCA-203ENST00000578063 CEP162Q5TB80 1403 aa29.71■■■□□ 2.35
PRKCA-203ENST00000578063 ADAMTS12P58397 1594 aa29.63■■■□□ 2.33
PRKCA-203ENST00000578063 FHAD1B1AJZ9 1412 aa29.63■■■□□ 2.33
PRKCA-203ENST00000578063 SNAPC4Q5SXM2 1469 aa29.56■■■□□ 2.32
PRKCA-203ENST00000578063 MAGI1Q96QZ7 1491 aaPredicted RBP29.55■■■□□ 2.32
PRKCA-203ENST00000578063 CLIP1P30622 1438 aa29.55■■■□□ 2.32
PRKCA-203ENST00000578063 CTTNBP2Q8WZ74 1663 aa29.44■■■□□ 2.3
PRKCA-203ENST00000578063 SYNJ2O15056 1496 aa29.42■■■□□ 2.3
PRKCA-203ENST00000578063 GRIN2AQ12879 1464 aa29.38■■■□□ 2.29
PRKCA-203ENST00000578063 RANGAP1P46060 587 aaPredicted RBP29.35■■■□□ 2.29
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms