Protein–RNA interactions for Protein: P0CW19

LIMS3, LIM and senescent cell antigen-like-containing domain protein 3, humanhuman

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3P0CW19 AL157400.5-201ENST00000507624 621 ntBASIC20.77■□□□□ 0.92
LIMS3P0CW19 RNF166-209ENST00000567844 633 ntTSL 5 BASIC20.77■□□□□ 0.92
LIMS3P0CW19 CR559946.2-201ENST00000623684 991 ntBASIC20.77■□□□□ 0.92
LIMS3P0CW19 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
LIMS3P0CW19 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC20.77■□□□□ 0.91
LIMS3P0CW19 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
LIMS3P0CW19 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
LIMS3P0CW19 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC20.77■□□□□ 0.91
LIMS3P0CW19 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC20.76■□□□□ 0.91
LIMS3P0CW19 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC20.76■□□□□ 0.91
LIMS3P0CW19 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
LIMS3P0CW19 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
LIMS3P0CW19 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
LIMS3P0CW19 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
LIMS3P0CW19 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC20.76■□□□□ 0.91
LIMS3P0CW19 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC20.76■□□□□ 0.91
LIMS3P0CW19 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC20.76■□□□□ 0.91
LIMS3P0CW19 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC20.76■□□□□ 0.91
LIMS3P0CW19 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
LIMS3P0CW19 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC20.75■□□□□ 0.91
LIMS3P0CW19 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
LIMS3P0CW19 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC20.75■□□□□ 0.91
LIMS3P0CW19 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
LIMS3P0CW19 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC20.75■□□□□ 0.91
LIMS3P0CW19 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
LIMS3P0CW19 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
LIMS3P0CW19 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC20.75■□□□□ 0.91
LIMS3P0CW19 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC20.75■□□□□ 0.91
LIMS3P0CW19 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
LIMS3P0CW19 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC20.74■□□□□ 0.91
LIMS3P0CW19 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
LIMS3P0CW19 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC20.74■□□□□ 0.91
LIMS3P0CW19 RPS2P35-201ENST00000443417 897 ntBASIC20.74■□□□□ 0.91
LIMS3P0CW19 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
LIMS3P0CW19 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
LIMS3P0CW19 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
LIMS3P0CW19 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
LIMS3P0CW19 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
LIMS3P0CW19 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC20.73■□□□□ 0.91
LIMS3P0CW19 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
LIMS3P0CW19 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC20.73■□□□□ 0.91
LIMS3P0CW19 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
LIMS3P0CW19 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
LIMS3P0CW19 ZNRF2P2-203ENST00000454624 420 ntBASIC20.73■□□□□ 0.91
LIMS3P0CW19 MIR3960-201ENST00000583311 91 ntBASIC20.73■□□□□ 0.91
LIMS3P0CW19 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
LIMS3P0CW19 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
LIMS3P0CW19 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
LIMS3P0CW19 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC20.73■□□□□ 0.91
LIMS3P0CW19 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
LIMS3P0CW19 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC20.72■□□□□ 0.91
LIMS3P0CW19 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC20.72■□□□□ 0.91
LIMS3P0CW19 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
LIMS3P0CW19 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
LIMS3P0CW19 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
LIMS3P0CW19 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
LIMS3P0CW19 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
LIMS3P0CW19 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
LIMS3P0CW19 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
LIMS3P0CW19 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
LIMS3P0CW19 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
LIMS3P0CW19 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC20.71■□□□□ 0.91
LIMS3P0CW19 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
LIMS3P0CW19 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
LIMS3P0CW19 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
LIMS3P0CW19 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.91
LIMS3P0CW19 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
LIMS3P0CW19 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC20.7■□□□□ 0.9
LIMS3P0CW19 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
LIMS3P0CW19 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
LIMS3P0CW19 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC20.7■□□□□ 0.9
LIMS3P0CW19 MOB2-207ENST00000614710 705 ntTSL 5 BASIC20.7■□□□□ 0.9
LIMS3P0CW19 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
LIMS3P0CW19 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
LIMS3P0CW19 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
LIMS3P0CW19 CLDN5-201ENST00000403084 2357 ntBASIC20.7■□□□□ 0.9
LIMS3P0CW19 GALC-202ENST00000393568 2054 ntTSL 2 BASIC20.69■□□□□ 0.9
LIMS3P0CW19 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
LIMS3P0CW19 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
LIMS3P0CW19 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
LIMS3P0CW19 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
LIMS3P0CW19 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
LIMS3P0CW19 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
LIMS3P0CW19 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC20.69■□□□□ 0.9
LIMS3P0CW19 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC20.69■□□□□ 0.9
LIMS3P0CW19 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
LIMS3P0CW19 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC20.69■□□□□ 0.9
LIMS3P0CW19 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
LIMS3P0CW19 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
LIMS3P0CW19 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
LIMS3P0CW19 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
LIMS3P0CW19 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
LIMS3P0CW19 MLEC-202ENST00000412616 841 ntTSL 3 BASIC20.68■□□□□ 0.9
LIMS3P0CW19 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC20.68■□□□□ 0.9
LIMS3P0CW19 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
LIMS3P0CW19 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
LIMS3P0CW19 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
LIMS3P0CW19 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
LIMS3P0CW19 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC20.68■□□□□ 0.9
LIMS3P0CW19 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 64 ms