Protein–RNA interactions for Protein: P35523

CLCN1, Chloride channel protein 1, humanhuman

Predictions only

Length 988 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN1P35523 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC18.02■□□□□ 0.48
CLCN1P35523 PCDHA6-203ENST00000529310 5374 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CLCN1P35523 SF1-201ENST00000227503 2850 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
CLCN1P35523 ARFGAP1-212ENST00000519604 3191 ntTSL 2 BASIC18.02■□□□□ 0.48
CLCN1P35523 NEDD4L-202ENST00000356462 3335 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CLCN1P35523 ZNF79-201ENST00000342483 2078 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CLCN1P35523 PIK3R5-216ENST00000584803 2653 ntAPPRIS ALT1 TSL 5 BASIC18.02■□□□□ 0.48
CLCN1P35523 INIP-202ENST00000374236 874 ntTSL 2 BASIC18.02■□□□□ 0.48
CLCN1P35523 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CLCN1P35523 CLEC16A-202ENST00000409552 3365 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CLCN1P35523 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC18.02■□□□□ 0.48
CLCN1P35523 AL023775.1-201ENST00000454907 1746 ntBASIC18.02■□□□□ 0.48
CLCN1P35523 RNA5SP419-201ENST00000515908 135 ntBASIC18.02■□□□□ 0.48
CLCN1P35523 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC18.02■□□□□ 0.48
CLCN1P35523 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC18.02■□□□□ 0.48
CLCN1P35523 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC18.02■□□□□ 0.48
CLCN1P35523 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC18.02■□□□□ 0.48
CLCN1P35523 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC18.02■□□□□ 0.48
CLCN1P35523 MCC-202ENST00000408903 3476 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.48
CLCN1P35523 IRF8-201ENST00000268638 3030 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CLCN1P35523 NRG1-202ENST00000356819 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.47
CLCN1P35523 MARK4-201ENST00000262891 3573 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
CLCN1P35523 TBL3-205ENST00000568546 6803 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.47
CLCN1P35523 ZNF362-201ENST00000373428 2936 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
CLCN1P35523 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.47
CLCN1P35523 TIFA-201ENST00000361717 4157 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CLCN1P35523 SPOCD1-201ENST00000257100 2472 ntAPPRIS ALT2 TSL 2 BASIC18.01■□□□□ 0.47
CLCN1P35523 PSMG3-AS1-201ENST00000437621 5701 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CLCN1P35523 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC18.01■□□□□ 0.47
CLCN1P35523 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CLCN1P35523 SEZ6L-202ENST00000343706 2898 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CLCN1P35523 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CLCN1P35523 LENG8-208ENST00000610347 5789 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
CLCN1P35523 CAPN7-201ENST00000253693 4353 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CLCN1P35523 SLC26A1-201ENST00000361661 3660 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CLCN1P35523 CHRNA3-201ENST00000326828 3202 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CLCN1P35523 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
CLCN1P35523 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CLCN1P35523 RNASEH2C-201ENST00000308418 2794 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CLCN1P35523 CAP2-209ENST00000616440 2776 ntTSL 2 BASIC18.01■□□□□ 0.47
CLCN1P35523 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CLCN1P35523 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CLCN1P35523 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC18.01■□□□□ 0.47
CLCN1P35523 MRPL3P1-201ENST00000400109 1033 ntBASIC18.01■□□□□ 0.47
CLCN1P35523 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC18.01■□□□□ 0.47
CLCN1P35523 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC18.01■□□□□ 0.47
CLCN1P35523 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC18.01■□□□□ 0.47
CLCN1P35523 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC18.01■□□□□ 0.47
CLCN1P35523 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CLCN1P35523 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC18.01■□□□□ 0.47
CLCN1P35523 PMS2P1-201ENST00000431037 1228 ntBASIC18.01■□□□□ 0.47
CLCN1P35523 AL035078.1-201ENST00000531962 820 ntTSL 5 BASIC18.01■□□□□ 0.47
CLCN1P35523 RPS29-206ENST00000557111 488 ntTSL 2 BASIC18.01■□□□□ 0.47
CLCN1P35523 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CLCN1P35523 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC18.01■□□□□ 0.47
CLCN1P35523 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC18.01■□□□□ 0.47
CLCN1P35523 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC18.01■□□□□ 0.47
CLCN1P35523 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
CLCN1P35523 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC18.01■□□□□ 0.47
CLCN1P35523 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
CLCN1P35523 RPL15-201ENST00000307839 2730 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CLCN1P35523 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC18.01■□□□□ 0.47
CLCN1P35523 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
CLCN1P35523 TMEM184B-202ENST00000361906 3611 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CLCN1P35523 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC18.01■□□□□ 0.47
CLCN1P35523 RB1CC1-202ENST00000435644 6614 ntAPPRIS ALT1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CLCN1P35523 GTF2IRD1-202ENST00000424337 3077 ntAPPRIS ALT1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CLCN1P35523 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC18.01■□□□□ 0.47
CLCN1P35523 GOLGA7B-201ENST00000370602 6447 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CLCN1P35523 KCNT1-208ENST00000488444 3696 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
CLCN1P35523 SEMA4B-201ENST00000332496 3781 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CLCN1P35523 MTF2-202ENST00000370303 1951 ntTSL 1 (best) BASIC18■□□□□ 0.47
CLCN1P35523 SCFD2-201ENST00000388940 2221 ntTSL 2 BASIC18■□□□□ 0.47
CLCN1P35523 GOPC-203ENST00000535237 4460 ntTSL 1 (best) BASIC18■□□□□ 0.47
CLCN1P35523 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC18■□□□□ 0.47
CLCN1P35523 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CLCN1P35523 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CLCN1P35523 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC18■□□□□ 0.47
CLCN1P35523 SCUBE2-201ENST00000309263 3727 ntTSL 5 BASIC18■□□□□ 0.47
CLCN1P35523 GLIS2-202ENST00000433375 3705 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CLCN1P35523 MLXIPL-203ENST00000354613 3215 ntTSL 1 (best) BASIC18■□□□□ 0.47
CLCN1P35523 RPS2P28-201ENST00000314255 741 ntBASIC18■□□□□ 0.47
CLCN1P35523 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC18■□□□□ 0.47
CLCN1P35523 CDK11B-203ENST00000341832 2998 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CLCN1P35523 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CLCN1P35523 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
CLCN1P35523 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC18■□□□□ 0.47
CLCN1P35523 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CLCN1P35523 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC18■□□□□ 0.47
CLCN1P35523 AC132872.1-201ENST00000566986 1195 ntBASIC18■□□□□ 0.47
CLCN1P35523 OR7E47P-204ENST00000575924 449 ntBASIC18■□□□□ 0.47
CLCN1P35523 MIR7706-201ENST00000613747 67 ntBASIC18■□□□□ 0.47
CLCN1P35523 AL773604.1-201ENST00000617417 272 ntBASIC18■□□□□ 0.47
CLCN1P35523 MIR1199-201ENST00000621445 119 ntBASIC18■□□□□ 0.47
CLCN1P35523 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
CLCN1P35523 SGK2-204ENST00000373100 2225 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
CLCN1P35523 KRT8P44-201ENST00000441609 1350 ntBASIC18■□□□□ 0.47
CLCN1P35523 APLP2-203ENST00000338167 3270 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
CLCN1P35523 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC18■□□□□ 0.47
CLCN1P35523 PKM-220ENST00000568459 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC18■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 59.8 ms