Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 PSMB7-204ENST00000474081 546 ntTSL 57.21□□□□□ -1.262e-13■□□□□ 10.4
YBX3P16989 PSMB7-205ENST00000478817 388 ntTSL 56.13□□□□□ -1.432e-13■□□□□ 10.4
YBX3P16989 EIF3L-213ENST00000482600 1294 ntTSL 512.67□□□□□ -0.382e-9■□□□□ 10.4
YBX3P16989 VARS-228ENST00000495010 1007 ntTSL 519.93■□□□□ 0.787e-8■□□□□ 10.4
YBX3P16989 CSNK1D-206ENST00000577578 928 ntTSL 216.59■□□□□ 0.252e-7■□□□□ 10.4
YBX3P16989 CCT8-202ENST00000431234 968 ntTSL 57.7□□□□□ -1.184e-13■□□□□ 10.4
YBX3P16989 RPLP2-205ENST00000527517 646 ntTSL 213.57□□□□□ -0.242e-77■□□□□ 10.4
YBX3P16989 CTSC-202ENST00000393301 598 ntTSL 216.87■□□□□ 0.292e-8■□□□□ 10.4
YBX3P16989 CTSC-207ENST00000533865 542 ntTSL 415.3■□□□□ 0.042e-8■□□□□ 10.4
YBX3P16989 CTSC-206ENST00000529974 747 ntTSL 1 (best) BASIC15.03■□□□□ -02e-8■□□□□ 10.4
YBX3P16989 CTSC-209ENST00000534131 583 ntTSL 214.65□□□□□ -0.062e-8■□□□□ 10.4
YBX3P16989 CTSC-203ENST00000524463 6125 ntTSL 1 (best) BASIC10.73□□□□□ -0.692e-8■□□□□ 10.4
YBX3P16989 NUDT5-209ENST00000537776 1201 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.133e-6■□□□□ 10.4
YBX3P16989 NUDT5-202ENST00000378937 919 ntTSL 3 BASIC9.96□□□□□ -0.823e-6■□□□□ 10.4
YBX3P16989 NUDT5-207ENST00000491614 3433 ntAPPRIS P1 TSL 1 (best) BASIC9.67□□□□□ -0.863e-6■□□□□ 10.4
YBX3P16989 NUDT5-204ENST00000378952 917 ntTSL 58.17□□□□□ -1.13e-6■□□□□ 10.4
YBX3P16989 HBE1-201ENST00000292896 827 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.499e-59■□□□□ 10.4
YBX3P16989 CDK16-220ENST00000523344 1266 ntTSL 516.1■□□□□ 0.179e-7■□□□□ 10.4
YBX3P16989 SERPINB1-202ENST00000460260 580 ntTSL 227.65■■■□□ 2.021e-8■□□□□ 10.4
YBX3P16989 AC073861.1-201ENST00000496294 459 ntBASIC13.81□□□□□ -0.23e-14■□□□□ 10.4
YBX3P16989 CCL20-203ENST00000473642 680 ntTSL 28.37□□□□□ -1.072e-10■□□□□ 10.4
YBX3P16989 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC17.46■□□□□ 0.394e-8■□□□□ 10.4
YBX3P16989 TNKS-213ENST00000522110 2900 ntBASIC13.41□□□□□ -0.264e-8■□□□□ 10.4
YBX3P16989 UHRF1BP1L-201ENST00000279907 5168 ntAPPRIS P4 TSL 1 (best) BASIC15.11■□□□□ 0.016e-6■□□□□ 10.4
YBX3P16989 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC2.37□□□□□ -2.036e-6■□□□□ 10.4
YBX3P16989 CLPX-203ENST00000558958 1493 ntTSL 1 (best)21.87■■□□□ 1.093e-7■□□□□ 10.4
YBX3P16989 CLPX-201ENST00000300107 4695 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.323e-7■□□□□ 10.4
YBX3P16989 PRRC2B-202ENST00000357304 11042 ntAPPRIS P1 TSL 5 BASIC11.05□□□□□ -0.644e-8■□□□□ 10.4
YBX3P16989 PRRC2B-203ENST00000405995 9157 ntTSL 5 BASIC9.94□□□□□ -0.824e-8■□□□□ 10.4
YBX3P16989 RACK1-234ENST00000515417 873 ntTSL 312.86□□□□□ -0.357e-61■□□□□ 10.4
YBX3P16989 MAZ-209ENST00000565777 1313 ntTSL 220.74■□□□□ 0.911e-9■□□□□ 10.4
YBX3P16989 AC144548.2-201ENST00000550231 946 ntTSL 3 BASIC7.07□□□□□ -1.286e-8■□□□□ 10.4
YBX3P16989 ARPC3-207ENST00000547365 308 ntTSL 26.07□□□□□ -1.446e-8■□□□□ 10.4
YBX3P16989 POLE3-203ENST00000475080 455 ntTSL 219.78■□□□□ 0.764e-13■□□□□ 10.4
YBX3P16989 HNRNPL-204ENST00000595443 2122 ntTSL 212.45□□□□□ -0.423e-12■□□□□ 10.4
YBX3P16989 SNRNP25-206ENST00000481947 1260 ntTSL 514.34□□□□□ -0.115e-7■□□□□ 10.4
YBX3P16989 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.873e-9■□□□□ 10.4
YBX3P16989 ALDOC-202ENST00000395319 1519 ntTSL 5 BASIC15.21■□□□□ 0.033e-9■□□□□ 10.4
YBX3P16989 ALDOC-203ENST00000395321 1722 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.23e-9■□□□□ 10.4
YBX3P16989 C1orf43-209ENST00000493814 441 ntTSL 212.1□□□□□ -0.471e-8■□□□□ 10.4
YBX3P16989 RACK1-206ENST00000503081 587 ntTSL 312.96□□□□□ -0.337e-61■□□□□ 10.4
YBX3P16989 RACK1-213ENST00000506312 559 ntTSL 512.27□□□□□ -0.457e-61■□□□□ 10.4
YBX3P16989 TFG-207ENST00000487505 913 ntTSL 322.13■■□□□ 1.132e-9■□□□□ 10.4
YBX3P16989 TFG-209ENST00000615993 1244 ntTSL 1 (best) BASIC8.44□□□□□ -1.062e-9■□□□□ 10.4
YBX3P16989 TMEM258-205ENST00000540434 553 ntTSL 216.12■□□□□ 0.172e-36■□□□□ 10.4
YBX3P16989 SS18L2-203ENST00000474941 567 ntTSL 29.84□□□□□ -0.835e-7■□□□□ 10.4
YBX3P16989 PHGDH-234ENST00000642041 943 nt23.23■■□□□ 1.312e-7■□□□□ 10.4
YBX3P16989 PHGDH-213ENST00000641272 758 nt22.92■■□□□ 1.262e-7■□□□□ 10.4
YBX3P16989 PHGDH-207ENST00000496756 508 ntTSL 218.23■□□□□ 0.512e-7■□□□□ 10.4
YBX3P16989 PHGDH-221ENST00000641573 1180 nt16.74■□□□□ 0.272e-7■□□□□ 10.4
YBX3P16989 PHGDH-203ENST00000462324 767 ntTSL 516.39■□□□□ 0.212e-7■□□□□ 10.4
YBX3P16989 PHGDH-218ENST00000641491 986 nt16.12■□□□□ 0.172e-7■□□□□ 10.4
YBX3P16989 PHGDH-220ENST00000641570 1036 nt15.72■□□□□ 0.112e-7■□□□□ 10.4
YBX3P16989 PHGDH-212ENST00000641247 710 nt14.25□□□□□ -0.132e-7■□□□□ 10.4
YBX3P16989 PHGDH-222ENST00000641587 566 nt14.08□□□□□ -0.162e-7■□□□□ 10.4
YBX3P16989 PHGDH-215ENST00000641371 725 nt10.97□□□□□ -0.652e-7■□□□□ 10.4
YBX3P16989 PHGDH-225ENST00000641720 548 nt10.65□□□□□ -0.72e-7■□□□□ 10.4
YBX3P16989 PHGDH-219ENST00000641513 735 nt10.16□□□□□ -0.782e-7■□□□□ 10.4
YBX3P16989 PHGDH-206ENST00000493622 742 ntTSL 59.97□□□□□ -0.812e-7■□□□□ 10.4
YBX3P16989 CCT8-207ENST00000481059 879 ntTSL 57.08□□□□□ -1.282e-13■□□□□ 10.4
YBX3P16989 AC092073.1-201ENST00000592740 625 ntAPPRIS P1 TSL 322.11■■□□□ 1.133e-14■□□□□ 10.4
YBX3P16989 SF3B3-210ENST00000567654 334 ntTSL 36.54□□□□□ -1.366e-9■□□□□ 10.4
YBX3P16989 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC31.81■■■□□ 2.686e-9■□□□□ 10.4
YBX3P16989 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC31.35■■■□□ 2.616e-9■□□□□ 10.4
YBX3P16989 PDCD6IP-208ENST00000465122 894 ntTSL 37.76□□□□□ -1.172e-7■□□□□ 10.4
YBX3P16989 TRAP1-209ENST00000574175 535 ntTSL 521.79■■□□□ 1.085e-9■□□□□ 10.4
YBX3P16989 TRAP1-208ENST00000573872 656 ntTSL 316.7■□□□□ 0.265e-9■□□□□ 10.4
YBX3P16989 TRAP1-214ENST00000575854 595 ntTSL 315.58■□□□□ 0.085e-9■□□□□ 10.4
YBX3P16989 TRAP1-204ENST00000570514 412 ntTSL 211.5□□□□□ -0.575e-9■□□□□ 10.4
YBX3P16989 GNAS-256ENST00000603546 573 ntTSL 536.89■■■■□ 3.52e-7■□□□□ 10.4
YBX3P16989 GNAS-244ENST00000485673 715 ntTSL 535.98■■■■□ 3.352e-7■□□□□ 10.4
YBX3P16989 GNAS-235ENST00000478585 543 ntTSL 235.09■■■■□ 3.212e-7■□□□□ 10.4
YBX3P16989 GNAS-249ENST00000490374 675 ntTSL 318.6■□□□□ 0.572e-7■□□□□ 10.4
YBX3P16989 GNAS-206ENST00000349036 581 ntTSL 518.38■□□□□ 0.532e-7■□□□□ 10.4
YBX3P16989 GNAS-216ENST00000419558 729 ntTSL 314.18□□□□□ -0.142e-7■□□□□ 10.4
YBX3P16989 GNAS-218ENST00000450130 595 ntTSL 513.91□□□□□ -0.182e-7■□□□□ 10.4
YBX3P16989 ECI2-208ENST00000478266 1133 ntTSL 522.59■■□□□ 1.211e-8■□□□□ 10.4
YBX3P16989 ECI2-201ENST00000361538 1380 ntTSL 1 (best) BASIC17.19■□□□□ 0.341e-8■□□□□ 10.4
YBX3P16989 ECI2-202ENST00000380118 1407 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.271e-8■□□□□ 10.4
YBX3P16989 ECI2-207ENST00000465828 1548 ntTSL 5 BASIC16.5■□□□□ 0.231e-8■□□□□ 10.4
YBX3P16989 ECI2-203ENST00000380120 1469 ntTSL 215.04■□□□□ -01e-8■□□□□ 10.4
YBX3P16989 ECI2-211ENST00000496241 1451 ntTSL 1 (best)14.94□□□□□ -0.021e-8■□□□□ 10.4
YBX3P16989 ECI2-205ENST00000464057 2122 ntTSL 214□□□□□ -0.171e-8■□□□□ 10.4
YBX3P16989 ECI2-204ENST00000380125 1405 ntTSL 1 (best) BASIC9.25□□□□□ -0.931e-8■□□□□ 10.4
YBX3P16989 ECI2-206ENST00000464583 3870 ntTSL 26.44□□□□□ -1.381e-8■□□□□ 10.4
YBX3P16989 FURIN-202ENST00000558794 844 ntTSL 524.45■■□□□ 1.53e-7■□□□□ 10.4
YBX3P16989 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC23.97■■□□□ 1.432e-12■□□□□ 10.4
YBX3P16989 CYCS-203ENST00000409764 799 ntAPPRIS P1 TSL 3 BASIC17.4■□□□□ 0.382e-12■□□□□ 10.4
YBX3P16989 CYCS-204ENST00000413447 498 ntTSL 317.4■□□□□ 0.382e-12■□□□□ 10.4
YBX3P16989 CYCS-201ENST00000305786 4098 ntAPPRIS P1 TSL 1 (best) BASIC9.7□□□□□ -0.862e-12■□□□□ 10.4
YBX3P16989 MRPL28-204ENST00000441883 800 ntTSL 536.48■■■■□ 3.439e-6■□□□□ 10.4
YBX3P16989 MRPL28-205ENST00000447696 722 ntTSL 332.02■■■□□ 2.729e-6■□□□□ 10.4
YBX3P16989 UBTF-214ENST00000537550 1085 ntTSL 231.24■■■□□ 2.599e-6■□□□□ 10.4
YBX3P16989 ASL-210ENST00000496336 996 ntTSL 1 (best)30.23■■■□□ 2.439e-6■□□□□ 10.4
YBX3P16989 ASL-203ENST00000380839 1765 ntTSL 5 BASIC27.08■■□□□ 1.939e-6■□□□□ 10.4
YBX3P16989 ASL-202ENST00000362000 928 ntTSL 226.96■■□□□ 1.919e-6■□□□□ 10.4
YBX3P16989 ASL-207ENST00000487982 1007 ntTSL 225.92■■□□□ 1.749e-6■□□□□ 10.4
YBX3P16989 ATG4D-208ENST00000588667 1619 ntTSL 1 (best)25.54■■□□□ 1.689e-6■□□□□ 10.4
YBX3P16989 DSN1-206ENST00000447406 1146 ntTSL 525.32■■□□□ 1.649e-6■□□□□ 10.4
YBX3P16989 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.529e-6■□□□□ 10.4
Retrieved 100 of 29,075 protein–RNA pairs in 175.5 ms