RNA–Protein interactions for RNA: ENST00000567654.1

SF3B3-210, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 3

Gene SF3B3, Length 334 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-210ENST00000567654 AEBP2Q6ZN18 517 aaPredicted RBP19.97■□□□□ 0.79
SF3B3-210ENST00000567654 CHIC1Q5VXU3 224 aa19.48■□□□□ 0.71
SF3B3-210ENST00000567654 PHF23Q9BUL5 403 aaPredicted RBP17.21■□□□□ 0.35
SF3B3-210ENST00000567654 SENP3Q9H4L4 574 aaPredicted RBP16.8■□□□□ 0.28
SF3B3-210ENST00000567654 PLPPR3Q6T4P5 718 aa15.81■□□□□ 0.12
SF3B3-210ENST00000567654 FOXD1Q16676 465 aa15.68■□□□□ 0.1
SF3B3-210ENST00000567654 ADRA2BP18089 450 aa15.19■□□□□ 0.02
SF3B3-210ENST00000567654 PPP6R1Q9UPN7 881 aa15.19■□□□□ 0.02
SF3B3-210ENST00000567654 PIAS4Q8N2W9 510 aaPredicted RBP14.79□□□□□ -0.04
SF3B3-210ENST00000567654 POTEDQ86YR6 584 aa14.64□□□□□ -0.07
SF3B3-210ENST00000567654 MSH5O43196 834 aa14.31□□□□□ -0.12
SF3B3-210ENST00000567654 PPP4R3CPQ6ZMV5 832 aa14□□□□□ -0.17
SF3B3-210ENST00000567654 KCNA4P22459 653 aa13.82□□□□□ -0.2
SF3B3-210ENST00000567654 MAPK8IP2Q13387 824 aaPredicted RBP13.79□□□□□ -0.2
SF3B3-210ENST00000567654 SCAF1Q9H7N4 1312 aaKnown RBP13.71□□□□□ -0.21
SF3B3-210ENST00000567654 NCBP3Q53F19 620 aaKnown RBP13.56□□□□□ -0.24
SF3B3-210ENST00000567654 CNKSR2Q8WXI2 1034 aa13.54□□□□□ -0.24
SF3B3-210ENST00000567654 NPM3O75607 178 aaKnown RBP13.47□□□□□ -0.25
SF3B3-210ENST00000567654 DMRT2Q9Y5R5 561 aa13.44□□□□□ -0.26
SF3B3-210ENST00000567654 RNF216Q9NWF9 866 aaPredicted RBP13.24□□□□□ -0.29
SF3B3-210ENST00000567654 HOXD11P31277 338 aaPredicted RBP13.17□□□□□ -0.3
SF3B3-210ENST00000567654 SLC4A1APQ9BWU0 796 aaKnown RBP13.12□□□□□ -0.31
SF3B3-210ENST00000567654 NISCHQ9Y2I1 1504 aa13.06□□□□□ -0.32
SF3B3-210ENST00000567654 DCAF8L1A6NGE4 600 aa12.97□□□□□ -0.33
SF3B3-210ENST00000567654 EHMT2Q96KQ7 1210 aa12.93□□□□□ -0.34
SF3B3-210ENST00000567654 DNAJC5BQ9UF47 199 aa12.88□□□□□ -0.35
SF3B3-210ENST00000567654 ZBTB22O15209 634 aa12.74□□□□□ -0.37
SF3B3-210ENST00000567654 SLC4A2P04920 1241 aa12.72□□□□□ -0.37
SF3B3-210ENST00000567654 CSRNP3Q8WYN3 585 aa12.69□□□□□ -0.38
SF3B3-210ENST00000567654 FOXD4L1Q9NU39 408 aa12.62□□□□□ -0.39
SF3B3-210ENST00000567654 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.61□□□□□ -0.393e-11■□□□□ 8.8
SF3B3-210ENST00000567654 U3KPZ7 1027 aaPredicted RBP12.43□□□□□ -0.42
SF3B3-210ENST00000567654 MYCNP04198 464 aaPredicted RBP12.38□□□□□ -0.43
SF3B3-210ENST00000567654 RNF39Q9H2S5 420 aa12.33□□□□□ -0.44
SF3B3-210ENST00000567654 CACNB1Q02641 598 aaPredicted RBP12.21□□□□□ -0.45
SF3B3-210ENST00000567654 ATF5Q9Y2D1 282 aaPredicted RBP12.19□□□□□ -0.46
SF3B3-210ENST00000567654 SAMD1Q6SPF0 538 aaPredicted RBP12.16□□□□□ -0.46
SF3B3-210ENST00000567654 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.15□□□□□ -0.46
SF3B3-210ENST00000567654 HNRNPUL2Q1KMD3 747 aaKnown RBP12.15□□□□□ -0.46
SF3B3-210ENST00000567654 C1QBPQ07021 282 aaKnown RBP12.12□□□□□ -0.47
SF3B3-210ENST00000567654 SPINK5Q9NQ38 1064 aaPredicted RBP12.12□□□□□ -0.47
SF3B3-210ENST00000567654 ATXN8OSP0DMR3 200 aa12.08□□□□□ -0.48
SF3B3-210ENST00000567654 CAPN15O75808 1086 aa12.03□□□□□ -0.48
SF3B3-210ENST00000567654 TRHP20396 242 aaPredicted RBP12.01□□□□□ -0.49
SF3B3-210ENST00000567654 APLP2Q06481 763 aa11.99□□□□□ -0.49
SF3B3-210ENST00000567654 ZNF219Q9P2Y4 722 aaPredicted RBP11.89□□□□□ -0.51
SF3B3-210ENST00000567654 ABCB7O75027 752 aa11.86□□□□□ -0.51
SF3B3-210ENST00000567654 POLA2Q14181 598 aa11.8□□□□□ -0.52
SF3B3-210ENST00000567654 DSG3P32926 999 aa11.78□□□□□ -0.52
SF3B3-210ENST00000567654 MKRN4PQ13434 485 aaPredicted RBP11.62□□□□□ -0.55
SF3B3-210ENST00000567654 FBLN2P98095 1184 aa11.52□□□□□ -0.57
SF3B3-210ENST00000567654 FKBP8Q14318 412 aa11.48□□□□□ -0.57
SF3B3-210ENST00000567654 ZBTB12Q9Y330 459 aaPredicted RBP11.47□□□□□ -0.57
SF3B3-210ENST00000567654 CCDC180Q9P1Z9 1646 aa11.45□□□□□ -0.58
SF3B3-210ENST00000567654 OSCARQ8IYS5 282 aa11.43□□□□□ -0.58
SF3B3-210ENST00000567654 SPDYE4A6NLX3 237 aa11.34□□□□□ -0.59
SF3B3-210ENST00000567654 POTEHQ6S545 545 aa11.34□□□□□ -0.59
SF3B3-210ENST00000567654 ZNF692Q9BU19 519 aaPredicted RBP11.25□□□□□ -0.61
SF3B3-210ENST00000567654 SPDYE2BA6NHP3 402 aa11.21□□□□□ -0.61
SF3B3-210ENST00000567654 SPDYE6P0CI01 402 aa11.21□□□□□ -0.61
SF3B3-210ENST00000567654 SPDYE2Q495Y8 402 aa11.21□□□□□ -0.61
SF3B3-210ENST00000567654 SSUH2Q9Y2M2 353 aa11.17□□□□□ -0.62
SF3B3-210ENST00000567654 PABPN1Q86U42 306 aaKnown RBP eCLIP11.13□□□□□ -0.63
SF3B3-210ENST00000567654 RBM42Q9BTD8 480 aaKnown RBP11.12□□□□□ -0.63
SF3B3-210ENST00000567654 PROM2Q8N271 834 aa11.11□□□□□ -0.63
SF3B3-210ENST00000567654 AKT1S1Q96B36 256 aa11.03□□□□□ -0.64
SF3B3-210ENST00000567654 ZCCHC6Q5VYS8 1495 aaKnown RBP11□□□□□ -0.65
SF3B3-210ENST00000567654 REM2Q8IYK8 340 aaPredicted RBP10.99□□□□□ -0.65
SF3B3-210ENST00000567654 CLEC11AQ9Y240 323 aa10.93□□□□□ -0.66
SF3B3-210ENST00000567654 FBXO3Q9UK99 471 aa10.91□□□□□ -0.66
SF3B3-210ENST00000567654 PITPNM1O00562 1244 aa10.89□□□□□ -0.67
SF3B3-210ENST00000567654 SPDYE1Q8NFV5 336 aaPredicted RBP10.88□□□□□ -0.67
SF3B3-210ENST00000567654 VASPP50552 380 aaPredicted RBP10.84□□□□□ -0.67
SF3B3-210ENST00000567654 STAG3Q9UJ98 1225 aa10.83□□□□□ -0.68
SF3B3-210ENST00000567654 PRR29P0C7W0 189 aa10.78□□□□□ -0.68
SF3B3-210ENST00000567654 DCAF1Q9Y4B6 1507 aa10.77□□□□□ -0.69
SF3B3-210ENST00000567654 MIER1Q8N108 512 aa10.76□□□□□ -0.69
SF3B3-210ENST00000567654 IFNLR1Q8IU57 520 aaPredicted RBP10.75□□□□□ -0.69
SF3B3-210ENST00000567654 PLCD3Q8N3E9 789 aa10.75□□□□□ -0.69
SF3B3-210ENST00000567654 ABCC9O60706 1549 aa10.74□□□□□ -0.69
SF3B3-210ENST00000567654 CHRDL2Q6WN34 429 aa10.71□□□□□ -0.69
SF3B3-210ENST00000567654 CHADLQ6NUI6 762 aa10.7□□□□□ -0.7
SF3B3-210ENST00000567654 CREBZFQ9NS37 354 aa10.7□□□□□ -0.7
SF3B3-210ENST00000567654 SHROOM4Q9ULL8 1493 aa10.68□□□□□ -0.7
SF3B3-210ENST00000567654 KLHL34Q8N239 644 aa10.67□□□□□ -0.7
SF3B3-210ENST00000567654 DCAF8L2P0C7V8 631 aa10.66□□□□□ -0.7
SF3B3-210ENST00000567654 FXR2P51116 673 aaKnown RBP eCLIP10.62□□□□□ -0.711e-6■■■□□ 18.5
SF3B3-210ENST00000567654 PIP4P2Q8N4L2 257 aa10.62□□□□□ -0.71
SF3B3-210ENST00000567654 PRKAR2AP13861 404 aaKnown RBP10.61□□□□□ -0.71
SF3B3-210ENST00000567654 MYO15BQ96JP2 1530 aa10.6□□□□□ -0.71
SF3B3-210ENST00000567654 PLEKHG5O94827 1062 aa10.6□□□□□ -0.71
SF3B3-210ENST00000567654 RTN4Q9NQC3 1192 aaKnown RBP10.59□□□□□ -0.71
SF3B3-210ENST00000567654 MNX1P50219 401 aaPredicted RBP10.58□□□□□ -0.72
SF3B3-210ENST00000567654 NACADO15069 1562 aa10.56□□□□□ -0.72
SF3B3-210ENST00000567654 SCRIBQ14160 1630 aa10.55□□□□□ -0.72
SF3B3-210ENST00000567654 SPOCK2Q92563 424 aa10.54□□□□□ -0.72
SF3B3-210ENST00000567654 UNC13AQ9UPW8 1703 aa10.53□□□□□ -0.72
SF3B3-210ENST00000567654 ZBTB47Q9UFB7 747 aaPredicted RBP10.51□□□□□ -0.73
SF3B3-210ENST00000567654 FARP1Q9Y4F1 1045 aaPredicted RBP10.51□□□□□ -0.73
SF3B3-210ENST00000567654 AMER1Q5JTC6 1135 aaPredicted RBP10.49□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms