RNA–Protein interactions for RNA: ENST00000540434.1

TMEM258-205, Transcript of transmembrane protein 258, humanhuman

TSL 2

Gene TMEM258, Length 553 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM258-205ENST00000540434 NISCHQ9Y2I1 1504 aa28.18■■■□□ 2.1
TMEM258-205ENST00000540434 ABCC9O60706 1549 aa26.43■■□□□ 1.82
TMEM258-205ENST00000540434 DNAJC5BQ9UF47 199 aa25.64■■□□□ 1.7
TMEM258-205ENST00000540434 CCDC180Q9P1Z9 1646 aa25.52■■□□□ 1.68
TMEM258-205ENST00000540434 RB1CC1Q8TDY2 1594 aa24.61■■□□□ 1.53
TMEM258-205ENST00000540434 PABPN1Q86U42 306 aaKnown RBP eCLIP24.54■■□□□ 1.52
TMEM258-205ENST00000540434 NACADO15069 1562 aa24.25■■□□□ 1.47
TMEM258-205ENST00000540434 DCAF8L2P0C7V8 631 aa24.17■■□□□ 1.46
TMEM258-205ENST00000540434 UNC13AQ9UPW8 1703 aa24.15■■□□□ 1.46
TMEM258-205ENST00000540434 BICRAQ9NZM4 1560 aa24.03■■□□□ 1.44
TMEM258-205ENST00000540434 DNAJC5Q9H3Z4 198 aa24.01■■□□□ 1.43
TMEM258-205ENST00000540434 CECR2Q9BXF3 1484 aa23.82■■□□□ 1.4
TMEM258-205ENST00000540434 CC2D2AQ9P2K1 1620 aa23.76■■□□□ 1.39
TMEM258-205ENST00000540434 MYO15BQ96JP2 1530 aa23.75■■□□□ 1.39
TMEM258-205ENST00000540434 EIF4G1Q04637 1599 aaKnown RBP23.48■■□□□ 1.35
TMEM258-205ENST00000540434 SHROOM4Q9ULL8 1493 aa23.45■■□□□ 1.34
TMEM258-205ENST00000540434 SCRIBQ14160 1630 aa23.26■■□□□ 1.31
TMEM258-205ENST00000540434 DCAF1Q9Y4B6 1507 aa23.24■■□□□ 1.31
TMEM258-205ENST00000540434 ZCCHC6Q5VYS8 1495 aaKnown RBP23.22■■□□□ 1.31
TMEM258-205ENST00000540434 CUX2O14529 1486 aa22.96■■□□□ 1.27
TMEM258-205ENST00000540434 ERCC6Q03468 1493 aa22.79■■□□□ 1.24
TMEM258-205ENST00000540434 TRIM41Q8WV44 630 aa22.72■■□□□ 1.23
TMEM258-205ENST00000540434 NESP48681 1621 aa22.49■■□□□ 1.19
TMEM258-205ENST00000540434 NCAPD3P42695 1498 aa22.42■■□□□ 1.18
TMEM258-205ENST00000540434 THOC2Q8NI27 1593 aaKnown RBP22.33■■□□□ 1.16
TMEM258-205ENST00000540434 ATAD2BQ9ULI0 1458 aa22.28■■□□□ 1.16
TMEM258-205ENST00000540434 SMARCA2P51531 1590 aa22.2■■□□□ 1.14
TMEM258-205ENST00000540434 HMGXB3Q12766 1538 aa22.17■■□□□ 1.14
TMEM258-205ENST00000540434 KIF21AQ7Z4S6 1674 aa22.1■■□□□ 1.13
TMEM258-205ENST00000540434 SMARCA4P51532 1647 aa22.09■■□□□ 1.13
TMEM258-205ENST00000540434 LAMC3Q9Y6N6 1575 aa22.01■■□□□ 1.11
TMEM258-205ENST00000540434 BAZ1BQ9UIG0 1483 aaKnown RBP21.99■■□□□ 1.11
TMEM258-205ENST00000540434 PDS5BQ9NTI5 1447 aa21.92■■□□□ 1.1
TMEM258-205ENST00000540434 PEG3Q9GZU2 1588 aa21.91■■□□□ 1.1
TMEM258-205ENST00000540434 BAZ1AQ9NRL2 1556 aaPredicted RBP21.9■■□□□ 1.1
TMEM258-205ENST00000540434 OSCARQ8IYS5 282 aa21.84■■□□□ 1.09
TMEM258-205ENST00000540434 MRC2Q9UBG0 1479 aa21.83■■□□□ 1.08
TMEM258-205ENST00000540434 WDR62O43379 1518 aa21.79■■□□□ 1.08
TMEM258-205ENST00000540434 MROH2BQ7Z745 1585 aa21.72■■□□□ 1.07
TMEM258-205ENST00000540434 CADPSQ9ULU8 1353 aa21.72■■□□□ 1.07
TMEM258-205ENST00000540434 RIMBP3CA6NJZ7 1639 aa21.69■■□□□ 1.06
TMEM258-205ENST00000540434 RIMBP3BA6NNM3 1639 aa21.69■■□□□ 1.06
TMEM258-205ENST00000540434 RIMBP3Q9UFD9 1639 aa21.69■■□□□ 1.06
TMEM258-205ENST00000540434 CEP164Q9UPV0 1460 aa21.56■■□□□ 1.04
TMEM258-205ENST00000540434 ARHGEF11O15085 1522 aa21.51■■□□□ 1.03
TMEM258-205ENST00000540434 TRHP20396 242 aaPredicted RBP21.51■■□□□ 1.03
TMEM258-205ENST00000540434 FANCD2Q9BXW9 1451 aa21.5■■□□□ 1.03
TMEM258-205ENST00000540434 CYB5RLQ6IPT4 315 aa21.48■■□□□ 1.03
TMEM258-205ENST00000540434 AEBP2Q6ZN18 517 aaPredicted RBP21.46■■□□□ 1.03
TMEM258-205ENST00000540434 WIZO95785 1651 aa21.44■■□□□ 1.02
TMEM258-205ENST00000540434 URB2Q14146 1524 aaKnown RBP21.42■■□□□ 1.02
TMEM258-205ENST00000540434 CFTRP13569 1480 aa21.33■■□□□ 1.01
TMEM258-205ENST00000540434 ZNF608Q9ULD9 1512 aaPredicted RBP21.33■■□□□ 1
TMEM258-205ENST00000540434 ARAP1Q96P48 1450 aa21.27■■□□□ 1
TMEM258-205ENST00000540434 RSF1Q96T23 1441 aaPredicted RBP21.19■□□□□ 0.98
TMEM258-205ENST00000540434 IFT140Q96RY7 1462 aa21.15■□□□□ 0.98
TMEM258-205ENST00000540434 CHD1O14646 1710 aa21.11■□□□□ 0.97
TMEM258-205ENST00000540434 PRDM2Q13029 1718 aa21.11■□□□□ 0.97
TMEM258-205ENST00000540434 EIF4G3O43432 1585 aaKnown RBP21.09■□□□□ 0.97
TMEM258-205ENST00000540434 FBLN2P98095 1184 aa21.08■□□□□ 0.97
TMEM258-205ENST00000540434 TOP2AP11388 1531 aaKnown RBP21.08■□□□□ 0.96
TMEM258-205ENST00000540434 AQRO60306 1485 aaKnown RBP eCLIP21.02■□□□□ 0.961e-6■■■■□ 24.7
TMEM258-205ENST00000540434 TOPBP1Q92547 1522 aa21■□□□□ 0.95
TMEM258-205ENST00000540434 CCDC88BA6NC98 1476 aa20.88■□□□□ 0.93
TMEM258-205ENST00000540434 TARBP1Q13395 1621 aaKnown RBP20.88■□□□□ 0.93
TMEM258-205ENST00000540434 ABCC8Q09428 1581 aa20.87■□□□□ 0.93
TMEM258-205ENST00000540434 DNMBPQ6XZF7 1577 aa20.84■□□□□ 0.93
TMEM258-205ENST00000540434 CLASP1Q7Z460 1538 aa20.82■□□□□ 0.92
TMEM258-205ENST00000540434 TDRD9Q8NDG6 1382 aaKnown RBP20.77■□□□□ 0.92
TMEM258-205ENST00000540434 RAD54L2Q9Y4B4 1467 aa20.76■□□□□ 0.91
TMEM258-205ENST00000540434 SNAPC4Q5SXM2 1469 aa20.75■□□□□ 0.91
TMEM258-205ENST00000540434 POLA1P09884 1462 aaPredicted RBP20.74■□□□□ 0.91
TMEM258-205ENST00000540434 ILDR1Q86SU0 546 aaPredicted RBP20.73■□□□□ 0.91
TMEM258-205ENST00000540434 CHMP7Q8WUX9 453 aaPredicted RBP20.71■□□□□ 0.91
TMEM258-205ENST00000540434 SUPT5HO00267 1087 aaKnown RBP20.7■□□□□ 0.9
TMEM258-205ENST00000540434 GAPVD1Q14C86 1478 aa20.69■□□□□ 0.9
TMEM258-205ENST00000540434 SYNJ1O43426 1573 aa20.68■□□□□ 0.9
TMEM258-205ENST00000540434 SOGA1O94964 1423 aa20.63■□□□□ 0.89
TMEM258-205ENST00000540434 WDR97A6NE52 1622 aa20.56■□□□□ 0.88
TMEM258-205ENST00000540434 ERCC6L2Q5T890 1561 aa20.56■□□□□ 0.88
TMEM258-205ENST00000540434 MAGI1Q96QZ7 1491 aaPredicted RBP20.55■□□□□ 0.88
TMEM258-205ENST00000540434 SYNJ2O15056 1496 aa20.53■□□□□ 0.88
TMEM258-205ENST00000540434 FGD5Q6ZNL6 1462 aa20.51■□□□□ 0.87
TMEM258-205ENST00000540434 GRIN2BQ13224 1484 aa20.5■□□□□ 0.87
TMEM258-205ENST00000540434 KDM4FA0A1W2PPD8 638 aa20.47■□□□□ 0.87
TMEM258-205ENST00000540434 KIF13AQ9H1H9 1805 aa20.46■□□□□ 0.87
TMEM258-205ENST00000540434 CUX1P39880 1505 aa20.43■□□□□ 0.86
TMEM258-205ENST00000540434 PBRM1Q86U86 1689 aa20.41■□□□□ 0.86
TMEM258-205ENST00000540434 CEP170Q5SW79 1584 aa20.34■□□□□ 0.85
TMEM258-205ENST00000540434 FAM69CQ0P6D2 419 aa20.31■□□□□ 0.84
TMEM258-205ENST00000540434 ABCA5Q8WWZ7 1642 aa20.29■□□□□ 0.84
TMEM258-205ENST00000540434 GRIN2AQ12879 1464 aa20.25■□□□□ 0.83
TMEM258-205ENST00000540434 ABCA10Q8WWZ4 1543 aa20.25■□□□□ 0.83
TMEM258-205ENST00000540434 NUP160Q12769 1436 aa20.21■□□□□ 0.83
TMEM258-205ENST00000540434 SHROOM2Q13796 1616 aa20.2■□□□□ 0.82
TMEM258-205ENST00000540434 ABCC10Q5T3U5 1492 aa20.2■□□□□ 0.82
TMEM258-205ENST00000540434 KDM6BO15054 1643 aa20.19■□□□□ 0.82
TMEM258-205ENST00000540434 ADAMTS12P58397 1594 aa20.15■□□□□ 0.82
TMEM258-205ENST00000540434 DIP2BQ9P265 1576 aa20.14■□□□□ 0.81
TMEM258-205ENST00000540434 PRG4Q92954 1404 aaPredicted RBP20.14■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms