RNA–Protein interactions for RNA: ENST00000462324.2

PHGDH-203, Transcript of phosphoglycerate dehydrogenase, humanhuman

TSL 5

Gene PHGDH, Length 767 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHGDH-203ENST00000462324 NISCHQ9Y2I1 1504 aa31.17■■■□□ 2.58
PHGDH-203ENST00000462324 CCDC180Q9P1Z9 1646 aa27.52■■■□□ 2
PHGDH-203ENST00000462324 ABCC9O60706 1549 aa26.7■■□□□ 1.86
PHGDH-203ENST00000462324 DCAF8L2P0C7V8 631 aa26.04■■□□□ 1.76
PHGDH-203ENST00000462324 ZCCHC6Q5VYS8 1495 aaKnown RBP25.99■■□□□ 1.75
PHGDH-203ENST00000462324 NACADO15069 1562 aa25.88■■□□□ 1.73
PHGDH-203ENST00000462324 MYO15BQ96JP2 1530 aa25.85■■□□□ 1.73
PHGDH-203ENST00000462324 RB1CC1Q8TDY2 1594 aa25.83■■□□□ 1.73
PHGDH-203ENST00000462324 DCAF1Q9Y4B6 1507 aa25.83■■□□□ 1.72
PHGDH-203ENST00000462324 SCRIBQ14160 1630 aa25.12■■□□□ 1.61
PHGDH-203ENST00000462324 UNC13AQ9UPW8 1703 aa25.06■■□□□ 1.6
PHGDH-203ENST00000462324 PABPN1Q86U42 306 aaKnown RBP eCLIP25.05■■□□□ 1.6
PHGDH-203ENST00000462324 BICRAQ9NZM4 1560 aa24.96■■□□□ 1.59
PHGDH-203ENST00000462324 SHROOM4Q9ULL8 1493 aa24.83■■□□□ 1.57
PHGDH-203ENST00000462324 DNAJC5BQ9UF47 199 aa24.53■■□□□ 1.52
PHGDH-203ENST00000462324 EIF4G1Q04637 1599 aaKnown RBP24.31■■□□□ 1.48
PHGDH-203ENST00000462324 CECR2Q9BXF3 1484 aa24.22■■□□□ 1.47
PHGDH-203ENST00000462324 BAZ1AQ9NRL2 1556 aaPredicted RBP24.15■■□□□ 1.46
PHGDH-203ENST00000462324 CC2D2AQ9P2K1 1620 aa24.13■■□□□ 1.45
PHGDH-203ENST00000462324 SMARCA4P51532 1647 aa24.07■■□□□ 1.44
PHGDH-203ENST00000462324 MROH2BQ7Z745 1585 aa23.99■■□□□ 1.43
PHGDH-203ENST00000462324 ATAD2BQ9ULI0 1458 aa23.93■■□□□ 1.42
PHGDH-203ENST00000462324 SMARCA2P51531 1590 aa23.92■■□□□ 1.42
PHGDH-203ENST00000462324 NCAPD3P42695 1498 aa23.91■■□□□ 1.42
PHGDH-203ENST00000462324 RSF1Q96T23 1441 aaPredicted RBP23.87■■□□□ 1.41
PHGDH-203ENST00000462324 PEG3Q9GZU2 1588 aa23.86■■□□□ 1.41
PHGDH-203ENST00000462324 HMGXB3Q12766 1538 aa23.76■■□□□ 1.39
PHGDH-203ENST00000462324 BAZ1BQ9UIG0 1483 aaKnown RBP23.75■■□□□ 1.39
PHGDH-203ENST00000462324 WIZO95785 1651 aa23.7■■□□□ 1.39
PHGDH-203ENST00000462324 SUPT5HO00267 1087 aaKnown RBP23.54■■□□□ 1.36
PHGDH-203ENST00000462324 TOP2AP11388 1531 aaKnown RBP23.53■■□□□ 1.36
PHGDH-203ENST00000462324 CCDC88BA6NC98 1476 aa23.28■■□□□ 1.32
PHGDH-203ENST00000462324 CADPSQ9ULU8 1353 aa23.26■■□□□ 1.31
PHGDH-203ENST00000462324 LAMC3Q9Y6N6 1575 aa23.19■■□□□ 1.3
PHGDH-203ENST00000462324 NESP48681 1621 aa23.15■■□□□ 1.3
PHGDH-203ENST00000462324 CFTRP13569 1480 aa23.13■■□□□ 1.29
PHGDH-203ENST00000462324 PDS5BQ9NTI5 1447 aa23.1■■□□□ 1.29
PHGDH-203ENST00000462324 ERCC6Q03468 1493 aa23.04■■□□□ 1.28
PHGDH-203ENST00000462324 FANCD2Q9BXW9 1451 aa22.93■■□□□ 1.26
PHGDH-203ENST00000462324 CEP164Q9UPV0 1460 aa22.87■■□□□ 1.25
PHGDH-203ENST00000462324 PRDM2Q13029 1718 aa22.82■■□□□ 1.24
PHGDH-203ENST00000462324 KIF21AQ7Z4S6 1674 aa22.81■■□□□ 1.24
PHGDH-203ENST00000462324 MRC2Q9UBG0 1479 aa22.78■■□□□ 1.24
PHGDH-203ENST00000462324 ABCC8Q09428 1581 aa22.69■■□□□ 1.22
PHGDH-203ENST00000462324 THOC2Q8NI27 1593 aaKnown RBP22.69■■□□□ 1.22
PHGDH-203ENST00000462324 CUX2O14529 1486 aa22.69■■□□□ 1.22
PHGDH-203ENST00000462324 WDR62O43379 1518 aa22.66■■□□□ 1.22
PHGDH-203ENST00000462324 URB2Q14146 1524 aaKnown RBP22.64■■□□□ 1.21
PHGDH-203ENST00000462324 TOPBP1Q92547 1522 aa22.57■■□□□ 1.2
PHGDH-203ENST00000462324 DNMBPQ6XZF7 1577 aa22.57■■□□□ 1.2
PHGDH-203ENST00000462324 WRNQ14191 1432 aaPredicted RBP eCLIP22.52■■□□□ 1.2
PHGDH-203ENST00000462324 CUX1P39880 1505 aa22.48■■□□□ 1.19
PHGDH-203ENST00000462324 IFT140Q96RY7 1462 aa22.41■■□□□ 1.18
PHGDH-203ENST00000462324 DNAJC5Q9H3Z4 198 aa22.4■■□□□ 1.18
PHGDH-203ENST00000462324 POLA1P09884 1462 aaPredicted RBP22.4■■□□□ 1.18
PHGDH-203ENST00000462324 SOGA1O94964 1423 aa22.4■■□□□ 1.18
PHGDH-203ENST00000462324 FGD5Q6ZNL6 1462 aa22.39■■□□□ 1.17
PHGDH-203ENST00000462324 TOP2BQ02880 1626 aa22.38■■□□□ 1.17
PHGDH-203ENST00000462324 SYNJ1O43426 1573 aa22.34■■□□□ 1.17
PHGDH-203ENST00000462324 BIVM-ERCC5R4GMW8 1640 aa22.34■■□□□ 1.17
PHGDH-203ENST00000462324 RAD54L2Q9Y4B4 1467 aa22.3■■□□□ 1.16
PHGDH-203ENST00000462324 TRIM41Q8WV44 630 aa22.27■■□□□ 1.16
PHGDH-203ENST00000462324 TARBP1Q13395 1621 aaKnown RBP22.26■■□□□ 1.15
PHGDH-203ENST00000462324 ABCA10Q8WWZ4 1543 aa22.21■■□□□ 1.15
PHGDH-203ENST00000462324 ZNF608Q9ULD9 1512 aaPredicted RBP22.21■■□□□ 1.15
PHGDH-203ENST00000462324 TDRD9Q8NDG6 1382 aaKnown RBP22.2■■□□□ 1.14
PHGDH-203ENST00000462324 AQRO60306 1485 aaKnown RBP eCLIP22.17■■□□□ 1.142e-7■□□□□ 9.8
PHGDH-203ENST00000462324 WDR97A6NE52 1622 aa22.17■■□□□ 1.14
PHGDH-203ENST00000462324 CHIC1Q5VXU3 224 aa22.15■■□□□ 1.14
PHGDH-203ENST00000462324 GAPVD1Q14C86 1478 aa22.1■■□□□ 1.13
PHGDH-203ENST00000462324 EIF4G3O43432 1585 aaKnown RBP22.09■■□□□ 1.13
PHGDH-203ENST00000462324 GRIN2BQ13224 1484 aa22.07■■□□□ 1.12
PHGDH-203ENST00000462324 KIF27Q86VH2 1401 aa22.06■■□□□ 1.12
PHGDH-203ENST00000462324 ABCA5Q8WWZ7 1642 aa22.02■■□□□ 1.11
PHGDH-203ENST00000462324 MAGI1Q96QZ7 1491 aaPredicted RBP21.97■■□□□ 1.11
PHGDH-203ENST00000462324 ERICH3Q5RHP9 1530 aa21.96■■□□□ 1.11
PHGDH-203ENST00000462324 SNAPC4Q5SXM2 1469 aa21.95■■□□□ 1.1
PHGDH-203ENST00000462324 CHMP7Q8WUX9 453 aaPredicted RBP21.94■■□□□ 1.1
PHGDH-203ENST00000462324 IGF1RP08069 1367 aa21.93■■□□□ 1.1
PHGDH-203ENST00000462324 FBLN2P98095 1184 aa21.93■■□□□ 1.1
PHGDH-203ENST00000462324 OSCARQ8IYS5 282 aa21.9■■□□□ 1.1
PHGDH-203ENST00000462324 PBRM1Q86U86 1689 aa21.9■■□□□ 1.1
PHGDH-203ENST00000462324 FHAD1B1AJZ9 1412 aa21.89■■□□□ 1.09
PHGDH-203ENST00000462324 SYNJ2O15056 1496 aa21.88■■□□□ 1.09
PHGDH-203ENST00000462324 EEA1Q15075 1411 aa21.86■■□□□ 1.09
PHGDH-203ENST00000462324 RUSC2Q8N2Y8 1516 aa21.85■■□□□ 1.09
PHGDH-203ENST00000462324 CARMIL1Q5VZK9 1371 aa21.82■■□□□ 1.08
PHGDH-203ENST00000462324 CSRNP3Q8WYN3 585 aa21.81■■□□□ 1.08
PHGDH-203ENST00000462324 ADAMTS12P58397 1594 aa21.79■■□□□ 1.08
PHGDH-203ENST00000462324 CUL7Q14999 1698 aa21.77■■□□□ 1.08
PHGDH-203ENST00000462324 GRIN2AQ12879 1464 aa21.75■■□□□ 1.07
PHGDH-203ENST00000462324 FAM9AQ8IZU1 332 aaPredicted RBP21.74■■□□□ 1.07
PHGDH-203ENST00000462324 CHD1O14646 1710 aa21.72■■□□□ 1.07
PHGDH-203ENST00000462324 RAPGEF2Q9Y4G8 1499 aa21.7■■□□□ 1.06
PHGDH-203ENST00000462324 PRXQ9BXM0 1461 aa21.66■■□□□ 1.06
PHGDH-203ENST00000462324 NUP160Q12769 1436 aa21.65■■□□□ 1.06
PHGDH-203ENST00000462324 CEP170Q5SW79 1584 aa21.57■■□□□ 1.04
PHGDH-203ENST00000462324 CLASP1Q7Z460 1538 aa21.56■■□□□ 1.04
PHGDH-203ENST00000462324 KIAA0586Q9BVV6 1533 aa21.55■■□□□ 1.04
PHGDH-203ENST00000462324 JPH4Q96JJ6 628 aa21.53■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms