Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 TRAF3-208ENST00000560371 7640 ntAPPRIS P1 TSL 1 (best) BASIC9.79□□□□□ -0.84
LINC00643Q86TS7 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC9.79□□□□□ -0.84
LINC00643Q86TS7 AC004754.1-201ENST00000600536 2242 ntAPPRIS P1 TSL 5 BASIC9.79□□□□□ -0.84
LINC00643Q86TS7 SRGAP3-202ENST00000383836 8656 ntAPPRIS P1 TSL 1 (best) BASIC9.79□□□□□ -0.84
LINC00643Q86TS7 MYRIP-203ENST00000425621 2981 ntTSL 2 BASIC9.79□□□□□ -0.84
LINC00643Q86TS7 SIRPA-202ENST00000358771 3996 ntAPPRIS P3 TSL 1 (best) BASIC9.79□□□□□ -0.84
LINC00643Q86TS7 WDR47-204ENST00000369965 4240 ntAPPRIS P3 TSL 1 (best) BASIC9.79□□□□□ -0.84
LINC00643Q86TS7 MCHR1-201ENST00000249016 2851 ntAPPRIS P1 TSL 1 (best) BASIC9.79□□□□□ -0.84
LINC00643Q86TS7 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC9.79□□□□□ -0.84
LINC00643Q86TS7 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC9.79□□□□□ -0.84
LINC00643Q86TS7 CACNA1C-209ENST00000399603 7377 ntAPPRIS ALT2 TSL 5 BASIC9.79□□□□□ -0.84
LINC00643Q86TS7 AC060234.2-201ENST00000428825 1610 ntTSL 5 BASIC9.79□□□□□ -0.84
LINC00643Q86TS7 PML-210ENST00000563500 4502 ntAPPRIS ALT2 TSL 1 (best) BASIC9.79□□□□□ -0.84
LINC00643Q86TS7 PHTF2-206ENST00000422959 3525 ntAPPRIS P4 TSL 5 BASIC9.79□□□□□ -0.84
LINC00643Q86TS7 MTSS1-201ENST00000325064 2777 ntTSL 2 BASIC9.79□□□□□ -0.84
LINC00643Q86TS7 PPCDC-201ENST00000342932 2250 ntAPPRIS P1 TSL 1 (best) BASIC9.79□□□□□ -0.84
LINC00643Q86TS7 ACTG1-206ENST00000573283 2002 ntAPPRIS P1 TSL 5 BASIC9.79□□□□□ -0.84
LINC00643Q86TS7 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC9.79□□□□□ -0.84
LINC00643Q86TS7 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC9.79□□□□□ -0.84
LINC00643Q86TS7 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC9.79□□□□□ -0.84
LINC00643Q86TS7 TMEM63B-202ENST00000323267 3198 ntAPPRIS P1 TSL 5 BASIC9.79□□□□□ -0.84
LINC00643Q86TS7 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC9.79□□□□□ -0.84
LINC00643Q86TS7 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC9.79□□□□□ -0.84
LINC00643Q86TS7 PHF2-203ENST00000610682 2921 ntTSL 5 BASIC9.79□□□□□ -0.84
LINC00643Q86TS7 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC9.79□□□□□ -0.84
LINC00643Q86TS7 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC9.79□□□□□ -0.84
LINC00643Q86TS7 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC9.79□□□□□ -0.84
LINC00643Q86TS7 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC9.79□□□□□ -0.84
LINC00643Q86TS7 CYP2T1P-201ENST00000432607 1285 ntBASIC9.79□□□□□ -0.84
LINC00643Q86TS7 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC9.79□□□□□ -0.84
LINC00643Q86TS7 ISCU-212ENST00000547005 795 ntTSL 3 BASIC9.79□□□□□ -0.84
LINC00643Q86TS7 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC9.79□□□□□ -0.84
LINC00643Q86TS7 MAG-206ENST00000597035 542 ntTSL 4 BASIC9.79□□□□□ -0.84
LINC00643Q86TS7 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC9.79□□□□□ -0.84
LINC00643Q86TS7 ZNF341-202ENST00000375200 3579 ntAPPRIS ALT2 TSL 1 (best) BASIC9.79□□□□□ -0.84
LINC00643Q86TS7 MTUS1-204ENST00000381869 6256 ntTSL 5 BASIC9.79□□□□□ -0.84
LINC00643Q86TS7 AL135999.2-201ENST00000622438 1686 ntBASIC9.79□□□□□ -0.84
LINC00643Q86TS7 FES-202ENST00000394300 2302 ntTSL 1 (best) BASIC9.79□□□□□ -0.84
LINC00643Q86TS7 RSPO1-202ENST00000401068 2320 ntAPPRIS P1 TSL 1 (best) BASIC9.79□□□□□ -0.84
LINC00643Q86TS7 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC9.79□□□□□ -0.84
LINC00643Q86TS7 COL16A1-202ENST00000373668 3643 ntTSL 2 BASIC9.79□□□□□ -0.84
LINC00643Q86TS7 FAM156A-208ENST00000615092 2098 ntAPPRIS P2 TSL 5 BASIC9.79□□□□□ -0.84
LINC00643Q86TS7 ARHGEF2-206ENST00000462460 4438 ntTSL 5 BASIC9.79□□□□□ -0.84
LINC00643Q86TS7 GFAP-201ENST00000253408 3135 ntTSL 5 BASIC9.79□□□□□ -0.84
LINC00643Q86TS7 TNNI1-207ENST00000622580 6142 ntAPPRIS ALT1 TSL 1 (best) BASIC9.79□□□□□ -0.84
LINC00643Q86TS7 TLL1-206ENST00000513213 1829 ntTSL 1 (best) BASIC9.79□□□□□ -0.84
LINC00643Q86TS7 EPN2-205ENST00000395626 2863 ntTSL 2 BASIC9.79□□□□□ -0.84
LINC00643Q86TS7 SLC9A7P1-202ENST00000556476 2239 ntBASIC9.79□□□□□ -0.84
LINC00643Q86TS7 CREB3L4-204ENST00000368603 1557 ntAPPRIS P3 TSL 1 (best) BASIC9.79□□□□□ -0.84
LINC00643Q86TS7 KRT8P24-201ENST00000560290 1559 ntBASIC9.79□□□□□ -0.84
LINC00643Q86TS7 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC9.79□□□□□ -0.84
LINC00643Q86TS7 TP73-203ENST00000357733 4899 ntTSL 5 BASIC9.79□□□□□ -0.84
LINC00643Q86TS7 WNK1-202ENST00000340908 11208 ntTSL 5 BASIC9.79□□□□□ -0.84
LINC00643Q86TS7 OSBPL5-202ENST00000348039 2798 ntTSL 2 BASIC9.79□□□□□ -0.84
LINC00643Q86TS7 TMEM121B-202ENST00000399875 3961 ntAPPRIS ALT2 TSL 2 BASIC9.79□□□□□ -0.84
LINC00643Q86TS7 ITSN1-208ENST00000399349 5191 ntTSL 1 (best) BASIC9.79□□□□□ -0.84
LINC00643Q86TS7 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC9.79□□□□□ -0.84
LINC00643Q86TS7 AC092506.1-201ENST00000634580 2275 ntTSL 5 BASIC9.79□□□□□ -0.84
LINC00643Q86TS7 ZBTB11-201ENST00000312938 6020 ntAPPRIS P1 TSL 1 (best) BASIC9.79□□□□□ -0.84
LINC00643Q86TS7 AC022007.1-201ENST00000383808 1897 ntTSL 2 BASIC9.79□□□□□ -0.84
LINC00643Q86TS7 EGOT-201ENST00000414938 1464 ntTSL 1 (best) BASIC9.79□□□□□ -0.84
LINC00643Q86TS7 DLL4-201ENST00000249749 3372 ntAPPRIS P1 TSL 1 (best) BASIC9.78□□□□□ -0.84
LINC00643Q86TS7 ZNF721-205ENST00000511833 2966 ntAPPRIS P1 TSL 4 BASIC9.78□□□□□ -0.84
LINC00643Q86TS7 CACNA1C-214ENST00000399634 7590 ntAPPRIS ALT2 TSL 5 BASIC9.78□□□□□ -0.84
LINC00643Q86TS7 CACNA1C-222ENST00000406454 7590 ntAPPRIS ALT2 TSL 5 BASIC9.78□□□□□ -0.84
LINC00643Q86TS7 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC9.78□□□□□ -0.84
LINC00643Q86TS7 CMIP-208ENST00000566462 3512 ntTSL 4 BASIC9.78□□□□□ -0.84
LINC00643Q86TS7 CACNA1G-208ENST00000442258 7226 ntAPPRIS ALT2 TSL 1 (best) BASIC9.78□□□□□ -0.84
LINC00643Q86TS7 MLXIPL-201ENST00000313375 3278 ntAPPRIS P3 TSL 1 (best) BASIC9.78□□□□□ -0.84
LINC00643Q86TS7 FAM201A-201ENST00000377680 3437 ntTSL 1 (best) BASIC9.78□□□□□ -0.84
LINC00643Q86TS7 SPATA2-202ENST00000422556 4138 ntAPPRIS P1 TSL 2 BASIC9.78□□□□□ -0.84
LINC00643Q86TS7 LINC00384-201ENST00000437721 6852 ntTSL 1 (best) BASIC9.78□□□□□ -0.84
LINC00643Q86TS7 RNF111-201ENST00000348370 5913 ntAPPRIS P1 TSL 1 (best) BASIC9.78□□□□□ -0.84
LINC00643Q86TS7 TRIM46-205ENST00000392451 3195 ntTSL 2 BASIC9.78□□□□□ -0.84
LINC00643Q86TS7 TFDP1-201ENST00000375370 2648 ntAPPRIS P1 TSL 1 (best) BASIC9.78□□□□□ -0.84
LINC00643Q86TS7 FANCG-201ENST00000378643 2631 ntAPPRIS P2 TSL 1 (best) BASIC9.78□□□□□ -0.84
LINC00643Q86TS7 KCNMA1-285ENST00000640605 3864 ntAPPRIS ALT2 TSL 5 BASIC9.78□□□□□ -0.84
LINC00643Q86TS7 SCOC-210ENST00000608372 5129 ntAPPRIS P2 TSL 1 (best) BASIC9.78□□□□□ -0.84
LINC00643Q86TS7 S100PBP-203ENST00000373476 3320 ntAPPRIS P1 TSL 2 BASIC9.78□□□□□ -0.84
LINC00643Q86TS7 SLC35F2-203ENST00000525071 3331 ntAPPRIS ALT2 TSL 2 BASIC9.78□□□□□ -0.84
LINC00643Q86TS7 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC9.78□□□□□ -0.84
LINC00643Q86TS7 LDB3-202ENST00000361373 5297 ntAPPRIS P3 TSL 1 (best) BASIC9.78□□□□□ -0.84
LINC00643Q86TS7 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC9.78□□□□□ -0.84
LINC00643Q86TS7 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC9.78□□□□□ -0.84
LINC00643Q86TS7 NUP54-201ENST00000264883 2367 ntAPPRIS P1 TSL 1 (best) BASIC9.78□□□□□ -0.84
LINC00643Q86TS7 CLPB-209ENST00000538039 3078 ntAPPRIS ALT1 TSL 2 BASIC9.78□□□□□ -0.84
LINC00643Q86TS7 ELAVL1-201ENST00000407627 6015 ntAPPRIS P1 TSL 1 (best) BASIC9.78□□□□□ -0.84
LINC00643Q86TS7 HSPA1L-201ENST00000375654 2544 ntAPPRIS P1 TSL 1 (best) BASIC9.78□□□□□ -0.84
LINC00643Q86TS7 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC9.78□□□□□ -0.84
LINC00643Q86TS7 TRIM4-203ENST00000355947 3383 ntAPPRIS P4 TSL 1 (best) BASIC9.78□□□□□ -0.84
LINC00643Q86TS7 ABCG8-201ENST00000272286 2665 ntAPPRIS P1 TSL 1 (best) BASIC9.78□□□□□ -0.84
LINC00643Q86TS7 SLC35A4-203ENST00000612662 2657 ntAPPRIS P1 TSL 1 (best) BASIC9.78□□□□□ -0.84
LINC00643Q86TS7 GSE1-203ENST00000405402 4366 ntAPPRIS ALT2 TSL 1 (best) BASIC9.78□□□□□ -0.84
LINC00643Q86TS7 STRA6-222ENST00000616000 2843 ntAPPRIS P1 TSL 2 BASIC9.78□□□□□ -0.84
LINC00643Q86TS7 ACSL1-201ENST00000281455 3832 ntAPPRIS P3 TSL 1 (best) BASIC9.78□□□□□ -0.84
LINC00643Q86TS7 COX5BP2-201ENST00000392354 334 ntBASIC9.78□□□□□ -0.84
LINC00643Q86TS7 KRT18P29-201ENST00000397031 1267 ntBASIC9.78□□□□□ -0.84
LINC00643Q86TS7 AC027612.3-201ENST00000413684 1047 ntBASIC9.78□□□□□ -0.84
LINC00643Q86TS7 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC9.78□□□□□ -0.84
LINC00643Q86TS7 AC012184.2-203ENST00000443119 2110 ntAPPRIS P1 TSL 5 BASIC9.78□□□□□ -0.84
Retrieved 100 of 98,524 protein–RNA pairs in 58.1 ms