Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 RNPEP-213ENST00000492849 958 ntTSL 513.16□□□□□ -0.32e-7■□□□□ 10.5
YBX3P16989 CBFB-206ENST00000565389 846 ntTSL 1 (best)12.47□□□□□ -0.412e-6■□□□□ 10.5
YBX3P16989 RNPEP-211ENST00000487116 851 ntTSL 312.34□□□□□ -0.432e-7■□□□□ 10.5
YBX3P16989 NEDD1-203ENST00000429527 3366 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.493e-8■□□□□ 10.5
YBX3P16989 NXF1-211ENST00000531709 4128 ntTSL 1 (best) BASIC11.55□□□□□ -0.563e-8■□□□□ 10.5
YBX3P16989 PCYT1A-201ENST00000292823 5597 ntAPPRIS P1 TSL 1 (best) BASIC10.09□□□□□ -0.793e-8■□□□□ 10.5
YBX3P16989 PCYT1A-203ENST00000412869 499 ntTSL 39.54□□□□□ -0.883e-8■□□□□ 10.5
YBX3P16989 NEDD1-201ENST00000266742 4046 ntAPPRIS P1 TSL 2 BASIC8.37□□□□□ -1.073e-8■□□□□ 10.5
YBX3P16989 PCYT1A-204ENST00000419333 1325 ntTSL 5 BASIC8.14□□□□□ -1.113e-8■□□□□ 10.5
YBX3P16989 RNPEP-204ENST00000449524 505 ntTSL 36.82□□□□□ -1.322e-7■□□□□ 10.5
YBX3P16989 PCYT1A-208ENST00000438634 555 ntTSL 45.99□□□□□ -1.453e-8■□□□□ 10.5
YBX3P16989 TCF12-228ENST00000569880 311 ntTSL 55.95□□□□□ -1.463e-8■□□□□ 10.5
YBX3P16989 PTBP1-208ENST00000585956 767 ntTSL 327.33■■□□□ 1.972e-18■□□□□ 10.5
YBX3P16989 PTBP1-212ENST00000587136 583 ntTSL 327.29■■□□□ 1.962e-18■□□□□ 10.5
YBX3P16989 PTBP1-219ENST00000621737 1125 ntTSL 526.18■■□□□ 1.782e-18■□□□□ 10.5
YBX3P16989 SLC25A39-211ENST00000588767 807 ntTSL 520.46■□□□□ 0.871e-13■□□□□ 10.4
YBX3P16989 AP2A1-206ENST00000600199 2381 ntTSL 517.08■□□□□ 0.332e-8■□□□□ 10.4
YBX3P16989 FURIN-207ENST00000618099 4345 ntAPPRIS P1 TSL 5 BASIC15.84■□□□□ 0.136e-7■□□□□ 10.4
YBX3P16989 FURIN-206ENST00000610579 4191 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.226e-7■□□□□ 10.4
YBX3P16989 FURIN-201ENST00000268171 4244 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.36e-7■□□□□ 10.4
YBX3P16989 FN1-227ENST00000498719 2433 ntTSL 28.99□□□□□ -0.971e-57■□□□□ 10.4
YBX3P16989 EPHB4-207ENST00000489808 921 ntTSL 1 (best)24.97■■□□□ 1.596e-7■□□□□ 10.4
YBX3P16989 EPHB4-209ENST00000492878 769 ntTSL 521.94■■□□□ 1.16e-7■□□□□ 10.4
YBX3P16989 EPHB4-204ENST00000477446 1551 ntTSL 1 (best)20.89■□□□□ 0.936e-7■□□□□ 10.4
YBX3P16989 GATA2-205ENST00000492608 844 ntTSL 326.36■■□□□ 1.813e-9■□□□□ 10.4
YBX3P16989 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC23.63■■□□□ 1.372e-8■□□□□ 10.4
YBX3P16989 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.322e-8■□□□□ 10.4
YBX3P16989 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC25.37■■□□□ 1.654e-9■□□□□ 10.4
YBX3P16989 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.84e-9■□□□□ 10.4
YBX3P16989 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC18.48■□□□□ 0.554e-9■□□□□ 10.4
YBX3P16989 NGLY1-205ENST00000417874 2062 ntTSL 2 BASIC16■□□□□ 0.154e-9■□□□□ 10.4
YBX3P16989 NGLY1-214ENST00000493324 3058 ntTSL 213.33□□□□□ -0.284e-9■□□□□ 10.4
YBX3P16989 NGLY1-203ENST00000308710 2086 ntTSL 1 (best)10.18□□□□□ -0.784e-9■□□□□ 10.4
YBX3P16989 NGLY1-201ENST00000280699 1897 ntTSL 59.05□□□□□ -0.964e-9■□□□□ 10.4
YBX3P16989 NGLY1-206ENST00000427041 579 ntTSL 44.71□□□□□ -1.664e-9■□□□□ 10.4
YBX3P16989 RPL37-201ENST00000274242 7686 ntAPPRIS P2 TSL 1 (best) BASIC6.63□□□□□ -1.354e-9■□□□□ 10.4
YBX3P16989 FANCI-201ENST00000300027 4713 ntAPPRIS P3 TSL 5 BASIC6.04□□□□□ -1.442e-6■□□□□ 10.4
YBX3P16989 FANCI-202ENST00000310775 4743 ntAPPRIS ALT2 TSL 1 (best) BASIC4.62□□□□□ -1.672e-6■□□□□ 10.4
YBX3P16989 CCT8-205ENST00000475205 431 ntTSL 28.16□□□□□ -1.13e-12■□□□□ 10.4
YBX3P16989 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.361e-8■□□□□ 10.4
YBX3P16989 STIP1-204ENST00000536973 738 ntTSL 517.04■□□□□ 0.321e-8■□□□□ 10.4
YBX3P16989 STIP1-207ENST00000538945 1900 ntTSL 2 BASIC15.53■□□□□ 0.081e-8■□□□□ 10.4
YBX3P16989 STIP1-203ENST00000358794 2743 ntTSL 1 (best) BASIC14.72□□□□□ -0.051e-8■□□□□ 10.4
YBX3P16989 ADIPOR1-203ENST00000417068 1058 ntTSL 316.57■□□□□ 0.243e-7■□□□□ 10.4
YBX3P16989 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.688e-7■□□□□ 10.4
YBX3P16989 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.648e-7■□□□□ 10.4
YBX3P16989 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.368e-7■□□□□ 10.4
YBX3P16989 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC16.91■□□□□ 0.38e-7■□□□□ 10.4
YBX3P16989 SUPT20H-222ENST00000495071 3669 ntTSL 513.63□□□□□ -0.238e-7■□□□□ 10.4
YBX3P16989 SUPT20H-220ENST00000490716 3811 ntTSL 512.15□□□□□ -0.468e-7■□□□□ 10.4
YBX3P16989 SUPT20H-205ENST00000464744 2625 ntAPPRIS P3 TSL 2 BASIC10.57□□□□□ -0.728e-7■□□□□ 10.4
YBX3P16989 SUPT20H-224ENST00000542180 2478 ntAPPRIS ALT2 TSL 5 BASIC7.29□□□□□ -1.248e-7■□□□□ 10.4
YBX3P16989 GAPVD1-220ENST00000497580 3720 ntTSL 213.06□□□□□ -0.326e-10■□□□□ 10.4
YBX3P16989 GAPVD1-219ENST00000495955 5309 ntTSL 1 (best) BASIC10.69□□□□□ -0.76e-10■□□□□ 10.4
YBX3P16989 GAPVD1-204ENST00000394083 4747 ntTSL 5 BASIC9.51□□□□□ -0.896e-10■□□□□ 10.4
YBX3P16989 GAPVD1-207ENST00000394105 5207 ntAPPRIS P3 TSL 5 BASIC8.23□□□□□ -1.096e-10■□□□□ 10.4
YBX3P16989 GAPVD1-209ENST00000436712 2490 ntTSL 58.19□□□□□ -1.16e-10■□□□□ 10.4
YBX3P16989 GAPVD1-212ENST00000467750 3163 ntTSL 57.78□□□□□ -1.166e-10■□□□□ 10.4
YBX3P16989 GAPVD1-201ENST00000265956 2667 ntTSL 5 BASIC7.68□□□□□ -1.186e-10■□□□□ 10.4
YBX3P16989 GAPVD1-208ENST00000431329 2512 ntTSL 27.47□□□□□ -1.216e-10■□□□□ 10.4
YBX3P16989 GAPVD1-215ENST00000470056 8923 ntTSL 5 BASIC7.43□□□□□ -1.226e-10■□□□□ 10.4
YBX3P16989 GAPVD1-203ENST00000312123 4320 ntAPPRIS ALT1 TSL 1 (best) BASIC7.26□□□□□ -1.256e-10■□□□□ 10.4
YBX3P16989 GAPVD1-202ENST00000297933 6003 ntAPPRIS ALT2 TSL 1 (best) BASIC7.1□□□□□ -1.276e-10■□□□□ 10.4
YBX3P16989 GAPVD1-206ENST00000394104 6737 ntTSL 2 BASIC5.74□□□□□ -1.496e-10■□□□□ 10.4
YBX3P16989 LYL1-202ENST00000590120 1547 nt24.92■■□□□ 1.581e-8■□□□□ 10.4
YBX3P16989 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC22.59■■□□□ 1.212e-6■□□□□ 10.4
YBX3P16989 STAU2-204ENST00000518767 1146 ntTSL 1 (best)20.34■□□□□ 0.852e-6■□□□□ 10.4
YBX3P16989 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC17.97■□□□□ 0.472e-6■□□□□ 10.4
YBX3P16989 STAU2-203ENST00000518502 687 ntTSL 317.44■□□□□ 0.382e-6■□□□□ 10.4
YBX3P16989 STAU2-202ENST00000517542 1695 ntTSL 2 BASIC15.33■□□□□ 0.042e-6■□□□□ 10.4
YBX3P16989 STAU2-214ENST00000521451 2712 ntTSL 1 (best) BASIC15.01□□□□□ -0.012e-6■□□□□ 10.4
YBX3P16989 STAU2-215ENST00000521727 3953 ntTSL 5 BASIC10.38□□□□□ -0.752e-6■□□□□ 10.4
YBX3P16989 STAU2-205ENST00000518981 1746 ntTSL 28□□□□□ -1.132e-6■□□□□ 10.4
YBX3P16989 STAU2-210ENST00000521210 1950 ntTSL 2 BASIC7.43□□□□□ -1.222e-6■□□□□ 10.4
YBX3P16989 STAU2-220ENST00000522695 2646 ntAPPRIS ALT1 TSL 1 (best) BASIC5.86□□□□□ -1.472e-6■□□□□ 10.4
YBX3P16989 STAU2-225ENST00000523558 1603 ntTSL 2 BASIC4.68□□□□□ -1.662e-6■□□□□ 10.4
YBX3P16989 STAU2-201ENST00000355780 4061 ntTSL 1 (best) BASIC3.71□□□□□ -1.822e-6■□□□□ 10.4
YBX3P16989 STAU2-207ENST00000519961 3928 ntTSL 1 (best) BASIC3.67□□□□□ -1.822e-6■□□□□ 10.4
YBX3P16989 UBE2E1-208ENST00000481622 432 ntTSL 526.14■■□□□ 1.782e-15■□□□□ 10.4
YBX3P16989 UBE2E1-209ENST00000484048 786 ntTSL 321.05■□□□□ 0.962e-15■□□□□ 10.4
YBX3P16989 KIFC1-214ENST00000494554 631 ntTSL 222.91■■□□□ 1.261e-7■□□□□ 10.4
YBX3P16989 PRMT5-207ENST00000476175 682 ntTSL 28.94□□□□□ -0.982e-8■□□□□ 10.4
YBX3P16989 PRMT5-226ENST00000557443 337 ntTSL 37.7□□□□□ -1.182e-8■□□□□ 10.4
YBX3P16989 LZTR1-211ENST00000479606 3442 ntTSL 215.23■□□□□ 0.032e-7■□□□□ 10.4
YBX3P16989 VPS35-209ENST00000568642 447 ntTSL 33.88□□□□□ -1.799e-7■□□□□ 10.4
YBX3P16989 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC19.57■□□□□ 0.723e-6■□□□□ 10.4
YBX3P16989 UBTF-201ENST00000302904 4997 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.033e-6■□□□□ 10.4
YBX3P16989 CLPTM1-207ENST00000587537 737 ntTSL 212.46□□□□□ -0.413e-8■□□□□ 10.4
YBX3P16989 CHD8-210ENST00000555962 1232 ntTSL 511.39□□□□□ -0.592e-6■□□□□ 10.4
YBX3P16989 SLC37A4-211ENST00000529510 850 ntTSL 523.67■■□□□ 1.382e-15■□□□□ 10.4
YBX3P16989 SLC37A4-206ENST00000525372 1388 ntTSL 1 (best)22.43■■□□□ 1.182e-15■□□□□ 10.4
YBX3P16989 SLC37A4-212ENST00000530407 1472 ntTSL 219.39■□□□□ 0.692e-15■□□□□ 10.4
YBX3P16989 SLC37A4-215ENST00000534384 554 ntTSL 418.51■□□□□ 0.552e-15■□□□□ 10.4
YBX3P16989 SLC37A4-204ENST00000525039 1780 ntTSL 1 (best)18.35■□□□□ 0.532e-15■□□□□ 10.4
YBX3P16989 SLC37A4-209ENST00000526626 730 ntTSL 517.52■□□□□ 0.42e-15■□□□□ 10.4
YBX3P16989 PABPC4-216ENST00000492468 2257 ntTSL 215.11■□□□□ 0.013e-11■□□□□ 10.4
YBX3P16989 PABPC4-213ENST00000482028 633 ntTSL 214.37□□□□□ -0.113e-11■□□□□ 10.4
YBX3P16989 SLC37A4-203ENST00000524428 1526 ntTSL 1 (best)13.59□□□□□ -0.232e-15■□□□□ 10.4
YBX3P16989 SLC37A4-207ENST00000525787 1058 ntTSL 212.47□□□□□ -0.412e-15■□□□□ 10.4
YBX3P16989 SLC37A4-214ENST00000532888 1351 ntTSL 512.41□□□□□ -0.422e-15■□□□□ 10.4
Retrieved 100 of 29,075 protein–RNA pairs in 174.7 ms