RNA–Protein interactions for RNA: ENST00000531709.6

NXF1-211, Transcript of nuclear RNA export factor 1, humanhuman

TSL 1 (best) BASIC

Gene NXF1, Length 4,128 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NXF1-211ENST00000531709 NISCHQ9Y2I1 1504 aa21.55■■□□□ 1.04
NXF1-211ENST00000531709 SHROOM4Q9ULL8 1493 aa19.63■□□□□ 0.73
NXF1-211ENST00000531709 SUPT5HO00267 1087 aaKnown RBP19.55■□□□□ 0.72
NXF1-211ENST00000531709 DCAF8L2P0C7V8 631 aa19.47■□□□□ 0.71
NXF1-211ENST00000531709 PCGF6Q9BYE7 350 aa18.67■□□□□ 0.58
NXF1-211ENST00000531709 CHIC1Q5VXU3 224 aa18.5■□□□□ 0.55
NXF1-211ENST00000531709 EHMT2Q96KQ7 1210 aa18.39■□□□□ 0.54
NXF1-211ENST00000531709 HRCP23327 699 aa18.36■□□□□ 0.53
NXF1-211ENST00000531709 LOC105371045A0A1W2PR82 267 aa18.29■□□□□ 0.52
NXF1-211ENST00000531709 PPARGC1BQ86YN6 1023 aaKnown RBP18.23■□□□□ 0.51
NXF1-211ENST00000531709 FAM9AQ8IZU1 332 aaPredicted RBP18.22■□□□□ 0.51
NXF1-211ENST00000531709 ZCCHC6Q5VYS8 1495 aaKnown RBP18.12■□□□□ 0.49
NXF1-211ENST00000531709 MYO15BQ96JP2 1530 aa18.07■□□□□ 0.48
NXF1-211ENST00000531709 TRIM41Q8WV44 630 aa18.01■□□□□ 0.47
NXF1-211ENST00000531709 TRIM26Q12899 539 aaPredicted RBP17.93■□□□□ 0.46
NXF1-211ENST00000531709 TTBK1Q5TCY1 1321 aaPredicted RBP17.8■□□□□ 0.44
NXF1-211ENST00000531709 CCDC180Q9P1Z9 1646 aa17.75■□□□□ 0.43
NXF1-211ENST00000531709 ZEB1P37275 1124 aaPredicted RBP17.7■□□□□ 0.42
NXF1-211ENST00000531709 CCER1Q8TC90 406 aaPredicted RBP17.58■□□□□ 0.4
NXF1-211ENST00000531709 DCAF1Q9Y4B6 1507 aa17.58■□□□□ 0.4
NXF1-211ENST00000531709 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.45■□□□□ 0.38
NXF1-211ENST00000531709 SCRIBQ14160 1630 aa17.39■□□□□ 0.37
NXF1-211ENST00000531709 UBTFP17480 764 aaKnown RBP17.35■□□□□ 0.37
NXF1-211ENST00000531709 ABCC9O60706 1549 aa17.33■□□□□ 0.36
NXF1-211ENST00000531709 RANGAP1P46060 587 aaPredicted RBP17.33■□□□□ 0.36
NXF1-211ENST00000531709 RSF1Q96T23 1441 aaPredicted RBP17.32■□□□□ 0.36
NXF1-211ENST00000531709 CENPBP07199 599 aaPredicted RBP17.2■□□□□ 0.34
NXF1-211ENST00000531709 YTHDC1Q96MU7 727 aaKnown RBP17.19■□□□□ 0.34
NXF1-211ENST00000531709 APLP2Q06481 763 aa17.19■□□□□ 0.34
NXF1-211ENST00000531709 PELP1Q8IZL8 1130 aaKnown RBP17.17■□□□□ 0.34
NXF1-211ENST00000531709 DIEXFQ68CQ4 756 aaKnown RBP17.13■□□□□ 0.33
NXF1-211ENST00000531709 SCAF1Q9H7N4 1312 aaKnown RBP17.09■□□□□ 0.33
NXF1-211ENST00000531709 HNRNPUL2Q1KMD3 747 aaKnown RBP17.09■□□□□ 0.33
NXF1-211ENST00000531709 RB1CC1Q8TDY2 1594 aa17.06■□□□□ 0.32
NXF1-211ENST00000531709 CECR2Q9BXF3 1484 aa17.03■□□□□ 0.32
NXF1-211ENST00000531709 PABPN1Q86U42 306 aaKnown RBP eCLIP16.98■□□□□ 0.319e-7■□□□□ 8.8
NXF1-211ENST00000531709 GTF3C3Q9Y5Q9 886 aa16.98■□□□□ 0.31
NXF1-211ENST00000531709 ACIN1Q9UKV3 1341 aaKnown RBP16.96■□□□□ 0.3
NXF1-211ENST00000531709 NEUROD1Q13562 356 aa16.94■□□□□ 0.3
NXF1-211ENST00000531709 CSRNP3Q8WYN3 585 aa16.9■□□□□ 0.3
NXF1-211ENST00000531709 MROH2BQ7Z745 1585 aa16.86■□□□□ 0.29
NXF1-211ENST00000531709 ZNF316A6NFI3 1004 aaPredicted RBP16.81■□□□□ 0.28
NXF1-211ENST00000531709 ITGAEP38570 1179 aa16.77■□□□□ 0.28
NXF1-211ENST00000531709 CEP162Q5TB80 1403 aa16.73■□□□□ 0.27
NXF1-211ENST00000531709 WIZO95785 1651 aa16.72■□□□□ 0.27
NXF1-211ENST00000531709 NACADO15069 1562 aa16.71■□□□□ 0.27
NXF1-211ENST00000531709 ATP1B4Q9UN42 357 aaPredicted RBP16.69■□□□□ 0.26
NXF1-211ENST00000531709 SOGA1O94964 1423 aa16.68■□□□□ 0.26
NXF1-211ENST00000531709 ABCC8Q09428 1581 aa16.67■□□□□ 0.26
NXF1-211ENST00000531709 CCDC88BA6NC98 1476 aa16.66■□□□□ 0.26
NXF1-211ENST00000531709 MIER1Q8N108 512 aa16.62■□□□□ 0.25
NXF1-211ENST00000531709 BAZ1AQ9NRL2 1556 aaPredicted RBP16.58■□□□□ 0.25
NXF1-211ENST00000531709 TNIKQ9UKE5 1360 aa16.58■□□□□ 0.25
NXF1-211ENST00000531709 CLIP1P30622 1438 aa16.49■□□□□ 0.23
NXF1-211ENST00000531709 RUSC2Q8N2Y8 1516 aa16.49■□□□□ 0.23
NXF1-211ENST00000531709 GOLGA3Q08378 1498 aa16.48■□□□□ 0.23
NXF1-211ENST00000531709 WRNQ14191 1432 aaPredicted RBP eCLIP16.48■□□□□ 0.23
NXF1-211ENST00000531709 EEA1Q15075 1411 aa16.45■□□□□ 0.22
NXF1-211ENST00000531709 MYT1Q01538 1121 aa16.39■□□□□ 0.21
NXF1-211ENST00000531709 FAM50AQ14320 339 aaKnown RBP16.38■□□□□ 0.21
NXF1-211ENST00000531709 TOP2AP11388 1531 aaKnown RBP16.37■□□□□ 0.21
NXF1-211ENST00000531709 BCANQ96GW7 911 aa16.34■□□□□ 0.21
NXF1-211ENST00000531709 CEP164Q9UPV0 1460 aa16.33■□□□□ 0.21
NXF1-211ENST00000531709 P3H3Q8IVL6 736 aa16.32■□□□□ 0.2
NXF1-211ENST00000531709 SMARCA4P51532 1647 aa16.28■□□□□ 0.2
NXF1-211ENST00000531709 NEFLP07196 543 aa16.28■□□□□ 0.2
NXF1-211ENST00000531709 SMARCA2P51531 1590 aa16.26■□□□□ 0.19
NXF1-211ENST00000531709 KANK4Q5T7N3 995 aaPredicted RBP16.24■□□□□ 0.19
NXF1-211ENST00000531709 VPS8Q8N3P4 1428 aa16.23■□□□□ 0.19
NXF1-211ENST00000531709 BAZ1BQ9UIG0 1483 aaKnown RBP16.21■□□□□ 0.19
NXF1-211ENST00000531709 DDX10Q13206 875 aaKnown RBP16.2■□□□□ 0.18
NXF1-211ENST00000531709 HIRIP3Q9BW71 556 aaPredicted RBP16.19■□□□□ 0.18
NXF1-211ENST00000531709 RAPGEF2Q9Y4G8 1499 aa16.19■□□□□ 0.18
NXF1-211ENST00000531709 FKBP8Q14318 412 aa16.09■□□□□ 0.17
NXF1-211ENST00000531709 CNGB1Q14028 1251 aaPredicted RBP16.09■□□□□ 0.17
NXF1-211ENST00000531709 SUPT16HQ9Y5B9 1047 aaKnown RBP16.08■□□□□ 0.16
NXF1-211ENST00000531709 SIN3AQ96ST3 1273 aa16.07■□□□□ 0.16
NXF1-211ENST00000531709 ANP32CO43423 234 aa16.07■□□□□ 0.16
NXF1-211ENST00000531709 TRIM52Q96A61 297 aa16.07■□□□□ 0.16
NXF1-211ENST00000531709 CLSPNQ9HAW4 1339 aa16.04■□□□□ 0.16
NXF1-211ENST00000531709 DHX57Q6P158 1386 aaKnown RBP16.03■□□□□ 0.16
NXF1-211ENST00000531709 KIF27Q86VH2 1401 aa16.02■□□□□ 0.16
NXF1-211ENST00000531709 CCNB3Q8WWL7 1395 aa16.02■□□□□ 0.16
NXF1-211ENST00000531709 ATAD2BQ9ULI0 1458 aa16.02■□□□□ 0.16
NXF1-211ENST00000531709 KCNH8Q96L42 1107 aa16.01■□□□□ 0.15
NXF1-211ENST00000531709 SYNJ1O43426 1573 aa16.01■□□□□ 0.15
NXF1-211ENST00000531709 ERICH6Q7L0X2 663 aa16■□□□□ 0.15
NXF1-211ENST00000531709 EIF4G1Q04637 1599 aaKnown RBP15.99■□□□□ 0.15
NXF1-211ENST00000531709 POLR3GLQ9BT43 218 aa15.97■□□□□ 0.15
NXF1-211ENST00000531709 ARID3CA6NKF2 412 aa15.97■□□□□ 0.15
NXF1-211ENST00000531709 KIF21BO75037 1637 aa15.95■□□□□ 0.14
NXF1-211ENST00000531709 RAB3GAP2Q9H2M9 1393 aa15.92■□□□□ 0.14
NXF1-211ENST00000531709 TONSLQ96HA7 1378 aa15.92■□□□□ 0.14
NXF1-211ENST00000531709 CHIC2Q9UKJ5 165 aa15.88■□□□□ 0.13
NXF1-211ENST00000531709 CUX2O14529 1486 aa15.87■□□□□ 0.13
NXF1-211ENST00000531709 HNRNPUQ00839 825 aaKnown RBP eCLIP15.87■□□□□ 0.13
NXF1-211ENST00000531709 IRX6P78412 446 aaPredicted RBP15.87■□□□□ 0.13
NXF1-211ENST00000531709 CARMIL1Q5VZK9 1371 aa15.84■□□□□ 0.13
NXF1-211ENST00000531709 ARAP1Q96P48 1450 aa15.83■□□□□ 0.12
NXF1-211ENST00000531709 TSHZ2Q9NRE2 1034 aa15.82■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 7 ms