RNA–Protein interactions for RNA: ENST00000490716.5

SUPT20H-220, Transcript of SPT20 homolog, SAGA complex component, humanhuman

TSL 5

Gene SUPT20H, Length 3,811 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SUPT20H-220ENST00000490716 NISCHQ9Y2I1 1504 aa23.51■■□□□ 1.35
SUPT20H-220ENST00000490716 CCDC180Q9P1Z9 1646 aa21.15■□□□□ 0.98
SUPT20H-220ENST00000490716 ABCC9O60706 1549 aa20.15■□□□□ 0.82
SUPT20H-220ENST00000490716 MYO15BQ96JP2 1530 aa19.8■□□□□ 0.76
SUPT20H-220ENST00000490716 NACADO15069 1562 aa19.7■□□□□ 0.74
SUPT20H-220ENST00000490716 DCAF1Q9Y4B6 1507 aa19.67■□□□□ 0.74
SUPT20H-220ENST00000490716 ZCCHC6Q5VYS8 1495 aaKnown RBP19.66■□□□□ 0.74
SUPT20H-220ENST00000490716 RB1CC1Q8TDY2 1594 aa19.63■□□□□ 0.73
SUPT20H-220ENST00000490716 UNC13AQ9UPW8 1703 aa19.6■□□□□ 0.73
SUPT20H-220ENST00000490716 BICRAQ9NZM4 1560 aa19.32■□□□□ 0.68
SUPT20H-220ENST00000490716 SHROOM4Q9ULL8 1493 aa19.07■□□□□ 0.64
SUPT20H-220ENST00000490716 SCRIBQ14160 1630 aa18.93■□□□□ 0.62
SUPT20H-220ENST00000490716 DCAF8L2P0C7V8 631 aa18.68■□□□□ 0.58
SUPT20H-220ENST00000490716 DNAJC5BQ9UF47 199 aa18.65■□□□□ 0.58
SUPT20H-220ENST00000490716 PABPN1Q86U42 306 aaKnown RBP eCLIP18.64■□□□□ 0.57
SUPT20H-220ENST00000490716 EIF4G1Q04637 1599 aaKnown RBP18.6■□□□□ 0.57
SUPT20H-220ENST00000490716 CC2D2AQ9P2K1 1620 aa18.52■□□□□ 0.56
SUPT20H-220ENST00000490716 PEG3Q9GZU2 1588 aa18.34■□□□□ 0.53
SUPT20H-220ENST00000490716 SMARCA4P51532 1647 aa18.3■□□□□ 0.52
SUPT20H-220ENST00000490716 CECR2Q9BXF3 1484 aa18.23■□□□□ 0.51
SUPT20H-220ENST00000490716 BAZ1AQ9NRL2 1556 aaPredicted RBP18.16■□□□□ 0.5
SUPT20H-220ENST00000490716 HMGXB3Q12766 1538 aa18.15■□□□□ 0.5
SUPT20H-220ENST00000490716 NCAPD3P42695 1498 aa18.15■□□□□ 0.5
SUPT20H-220ENST00000490716 ATAD2BQ9ULI0 1458 aa18.1■□□□□ 0.49
SUPT20H-220ENST00000490716 MROH2BQ7Z745 1585 aa18.09■□□□□ 0.49
SUPT20H-220ENST00000490716 SMARCA2P51531 1590 aa18.06■□□□□ 0.48
SUPT20H-220ENST00000490716 WIZO95785 1651 aa17.93■□□□□ 0.46
SUPT20H-220ENST00000490716 RSF1Q96T23 1441 aaPredicted RBP17.81■□□□□ 0.44
SUPT20H-220ENST00000490716 BAZ1BQ9UIG0 1483 aaKnown RBP17.78■□□□□ 0.44
SUPT20H-220ENST00000490716 TOP2AP11388 1531 aaKnown RBP17.74■□□□□ 0.43
SUPT20H-220ENST00000490716 PRDM2Q13029 1718 aa17.69■□□□□ 0.42
SUPT20H-220ENST00000490716 LAMC3Q9Y6N6 1575 aa17.69■□□□□ 0.42
SUPT20H-220ENST00000490716 THOC2Q8NI27 1593 aaKnown RBP17.63■□□□□ 0.41
SUPT20H-220ENST00000490716 KIF21AQ7Z4S6 1674 aa17.61■□□□□ 0.41
SUPT20H-220ENST00000490716 NESP48681 1621 aa17.58■□□□□ 0.41
SUPT20H-220ENST00000490716 CFTRP13569 1480 aa17.5■□□□□ 0.39
SUPT20H-220ENST00000490716 CADPSQ9ULU8 1353 aa17.44■□□□□ 0.38
SUPT20H-220ENST00000490716 CUX2O14529 1486 aa17.44■□□□□ 0.38
SUPT20H-220ENST00000490716 CCDC88BA6NC98 1476 aa17.43■□□□□ 0.38
SUPT20H-220ENST00000490716 WDR62O43379 1518 aa17.41■□□□□ 0.38
SUPT20H-220ENST00000490716 PDS5BQ9NTI5 1447 aa17.29■□□□□ 0.36
SUPT20H-220ENST00000490716 MRC2Q9UBG0 1479 aa17.25■□□□□ 0.35
SUPT20H-220ENST00000490716 FANCD2Q9BXW9 1451 aa17.24■□□□□ 0.35
SUPT20H-220ENST00000490716 URB2Q14146 1524 aaKnown RBP17.23■□□□□ 0.35
SUPT20H-220ENST00000490716 ERCC6Q03468 1493 aa17.22■□□□□ 0.35
SUPT20H-220ENST00000490716 CEP164Q9UPV0 1460 aa17.19■□□□□ 0.34
SUPT20H-220ENST00000490716 TARBP1Q13395 1621 aaKnown RBP17.1■□□□□ 0.33
SUPT20H-220ENST00000490716 DNMBPQ6XZF7 1577 aa17.1■□□□□ 0.33
SUPT20H-220ENST00000490716 WDR97A6NE52 1622 aa17.1■□□□□ 0.33
SUPT20H-220ENST00000490716 TOPBP1Q92547 1522 aa17.06■□□□□ 0.32
SUPT20H-220ENST00000490716 BIVM-ERCC5R4GMW8 1640 aa17.01■□□□□ 0.31
SUPT20H-220ENST00000490716 ABCC8Q09428 1581 aa17■□□□□ 0.31
SUPT20H-220ENST00000490716 CUX1P39880 1505 aa16.99■□□□□ 0.31
SUPT20H-220ENST00000490716 EIF4G3O43432 1585 aaKnown RBP16.9■□□□□ 0.3
SUPT20H-220ENST00000490716 IFT140Q96RY7 1462 aa16.9■□□□□ 0.3
SUPT20H-220ENST00000490716 POLA1P09884 1462 aaPredicted RBP16.9■□□□□ 0.3
SUPT20H-220ENST00000490716 TOP2BQ02880 1626 aa16.9■□□□□ 0.3
SUPT20H-220ENST00000490716 ABCA5Q8WWZ7 1642 aa16.85■□□□□ 0.29
SUPT20H-220ENST00000490716 SYNJ1O43426 1573 aa16.85■□□□□ 0.29
SUPT20H-220ENST00000490716 ZNF608Q9ULD9 1512 aaPredicted RBP16.84■□□□□ 0.29
SUPT20H-220ENST00000490716 PBRM1Q86U86 1689 aa16.79■□□□□ 0.28
SUPT20H-220ENST00000490716 FGD5Q6ZNL6 1462 aa16.79■□□□□ 0.28
SUPT20H-220ENST00000490716 ABCA10Q8WWZ4 1543 aa16.76■□□□□ 0.27
SUPT20H-220ENST00000490716 CHD1O14646 1710 aa16.74■□□□□ 0.27
SUPT20H-220ENST00000490716 RAD54L2Q9Y4B4 1467 aa16.72■□□□□ 0.27
SUPT20H-220ENST00000490716 DNAJC5Q9H3Z4 198 aa16.7■□□□□ 0.26
SUPT20H-220ENST00000490716 SUPT5HO00267 1087 aaKnown RBP16.67■□□□□ 0.26
SUPT20H-220ENST00000490716 SOGA1O94964 1423 aa16.64■□□□□ 0.25
SUPT20H-220ENST00000490716 WRNQ14191 1432 aaPredicted RBP eCLIP16.63■□□□□ 0.25
SUPT20H-220ENST00000490716 CLASP1Q7Z460 1538 aa16.63■□□□□ 0.25
SUPT20H-220ENST00000490716 AQRO60306 1485 aaKnown RBP eCLIP16.62■□□□□ 0.258e-6■■■■□ 23.2
SUPT20H-220ENST00000490716 ADAMTS12P58397 1594 aa16.59■□□□□ 0.25
SUPT20H-220ENST00000490716 MAGI1Q96QZ7 1491 aaPredicted RBP16.59■□□□□ 0.25
SUPT20H-220ENST00000490716 ERICH3Q5RHP9 1530 aa16.57■□□□□ 0.24
SUPT20H-220ENST00000490716 GRIN2BQ13224 1484 aa16.54■□□□□ 0.24
SUPT20H-220ENST00000490716 SNAPC4Q5SXM2 1469 aa16.52■□□□□ 0.24
SUPT20H-220ENST00000490716 SHROOM2Q13796 1616 aa16.52■□□□□ 0.24
SUPT20H-220ENST00000490716 GAPVD1Q14C86 1478 aa16.52■□□□□ 0.23
SUPT20H-220ENST00000490716 SYNJ2O15056 1496 aa16.49■□□□□ 0.23
SUPT20H-220ENST00000490716 RIMBP3CA6NJZ7 1639 aa16.48■□□□□ 0.23
SUPT20H-220ENST00000490716 RIMBP3BA6NNM3 1639 aa16.48■□□□□ 0.23
SUPT20H-220ENST00000490716 RIMBP3Q9UFD9 1639 aa16.48■□□□□ 0.23
SUPT20H-220ENST00000490716 TDRD9Q8NDG6 1382 aaKnown RBP16.47■□□□□ 0.23
SUPT20H-220ENST00000490716 CEP170Q5SW79 1584 aa16.46■□□□□ 0.23
SUPT20H-220ENST00000490716 CUL7Q14999 1698 aa16.44■□□□□ 0.22
SUPT20H-220ENST00000490716 NUP160Q12769 1436 aa16.42■□□□□ 0.22
SUPT20H-220ENST00000490716 GRIN2AQ12879 1464 aa16.39■□□□□ 0.21
SUPT20H-220ENST00000490716 RUSC2Q8N2Y8 1516 aa16.38■□□□□ 0.21
SUPT20H-220ENST00000490716 ARHGEF11O15085 1522 aa16.37■□□□□ 0.21
SUPT20H-220ENST00000490716 FHAD1B1AJZ9 1412 aa16.35■□□□□ 0.21
SUPT20H-220ENST00000490716 IGF1RP08069 1367 aa16.31■□□□□ 0.2
SUPT20H-220ENST00000490716 OSCARQ8IYS5 282 aa16.31■□□□□ 0.2
SUPT20H-220ENST00000490716 ARAP1Q96P48 1450 aa16.27■□□□□ 0.2
SUPT20H-220ENST00000490716 ERCC6L2Q5T890 1561 aa16.27■□□□□ 0.19
SUPT20H-220ENST00000490716 KIF27Q86VH2 1401 aa16.22■□□□□ 0.19
SUPT20H-220ENST00000490716 CTTNBP2Q8WZ74 1663 aa16.2■□□□□ 0.18
SUPT20H-220ENST00000490716 PRXQ9BXM0 1461 aa16.18■□□□□ 0.18
SUPT20H-220ENST00000490716 KIAA0586Q9BVV6 1533 aa16.13■□□□□ 0.17
SUPT20H-220ENST00000490716 UGGT2Q9NYU1 1516 aa16.1■□□□□ 0.17
SUPT20H-220ENST00000490716 IQGAP2Q13576 1575 aa16.07■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms