RNA–Protein interactions for RNA: ENST00000266742.8

NEDD1-201, Transcript of neural precursor cell expressed, developmentally down-regulated 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene NEDD1, Length 4,046 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD1-201ENST00000266742 NISCHQ9Y2I1 1504 aa16.82■□□□□ 0.28
NEDD1-201ENST00000266742 CCDC180Q9P1Z9 1646 aa14.31□□□□□ -0.12
NEDD1-201ENST00000266742 SHROOM4Q9ULL8 1493 aa14.3□□□□□ -0.12
NEDD1-201ENST00000266742 ZCCHC6Q5VYS8 1495 aaKnown RBP14.21□□□□□ -0.13
NEDD1-201ENST00000266742 SUPT5HO00267 1087 aaKnown RBP14.1□□□□□ -0.15
NEDD1-201ENST00000266742 DCAF8L2P0C7V8 631 aa14.03□□□□□ -0.16
NEDD1-201ENST00000266742 DCAF1Q9Y4B6 1507 aa13.85□□□□□ -0.19
NEDD1-201ENST00000266742 CHIC1Q5VXU3 224 aa13.69□□□□□ -0.22
NEDD1-201ENST00000266742 MYO15BQ96JP2 1530 aa13.48□□□□□ -0.25
NEDD1-201ENST00000266742 ABCC9O60706 1549 aa13.39□□□□□ -0.27
NEDD1-201ENST00000266742 SCRIBQ14160 1630 aa13.35□□□□□ -0.27
NEDD1-201ENST00000266742 HRCP23327 699 aa13.31□□□□□ -0.28
NEDD1-201ENST00000266742 RSF1Q96T23 1441 aaPredicted RBP13.3□□□□□ -0.28
NEDD1-201ENST00000266742 PCGF6Q9BYE7 350 aa13.29□□□□□ -0.28
NEDD1-201ENST00000266742 NACADO15069 1562 aa13.28□□□□□ -0.28
NEDD1-201ENST00000266742 LOC105371045A0A1W2PR82 267 aa13.23□□□□□ -0.29
NEDD1-201ENST00000266742 TRIM41Q8WV44 630 aa13.21□□□□□ -0.29
NEDD1-201ENST00000266742 RB1CC1Q8TDY2 1594 aa13.18□□□□□ -0.3
NEDD1-201ENST00000266742 TRIM26Q12899 539 aaPredicted RBP13.12□□□□□ -0.31
NEDD1-201ENST00000266742 CECR2Q9BXF3 1484 aa13.04□□□□□ -0.32
NEDD1-201ENST00000266742 MROH2BQ7Z745 1585 aa13.02□□□□□ -0.33
NEDD1-201ENST00000266742 FAM9AQ8IZU1 332 aaPredicted RBP13.01□□□□□ -0.33
NEDD1-201ENST00000266742 BAZ1AQ9NRL2 1556 aaPredicted RBP12.97□□□□□ -0.33
NEDD1-201ENST00000266742 ZEB1P37275 1124 aaPredicted RBP12.95□□□□□ -0.34
NEDD1-201ENST00000266742 WIZO95785 1651 aa12.92□□□□□ -0.34
NEDD1-201ENST00000266742 PPARGC1BQ86YN6 1023 aaKnown RBP12.89□□□□□ -0.35
NEDD1-201ENST00000266742 EHMT2Q96KQ7 1210 aa12.85□□□□□ -0.35
NEDD1-201ENST00000266742 TOP2AP11388 1531 aaKnown RBP12.81□□□□□ -0.36
NEDD1-201ENST00000266742 SMARCA4P51532 1647 aa12.78□□□□□ -0.36
NEDD1-201ENST00000266742 CCDC88BA6NC98 1476 aa12.73□□□□□ -0.37
NEDD1-201ENST00000266742 EIF4G1Q04637 1599 aaKnown RBP12.71□□□□□ -0.37
NEDD1-201ENST00000266742 SMARCA2P51531 1590 aa12.69□□□□□ -0.38
NEDD1-201ENST00000266742 EEA1Q15075 1411 aa12.67□□□□□ -0.38
NEDD1-201ENST00000266742 UNC13AQ9UPW8 1703 aa12.65□□□□□ -0.38
NEDD1-201ENST00000266742 PABPN1Q86U42 306 aaKnown RBP eCLIP12.65□□□□□ -0.38
NEDD1-201ENST00000266742 ABCC8Q09428 1581 aa12.64□□□□□ -0.39
NEDD1-201ENST00000266742 CSRNP3Q8WYN3 585 aa12.62□□□□□ -0.39
NEDD1-201ENST00000266742 TNIKQ9UKE5 1360 aa12.6□□□□□ -0.39
NEDD1-201ENST00000266742 UBTFP17480 764 aaKnown RBP12.59□□□□□ -0.39
NEDD1-201ENST00000266742 CCER1Q8TC90 406 aaPredicted RBP12.58□□□□□ -0.4
NEDD1-201ENST00000266742 WRNQ14191 1432 aaPredicted RBP eCLIP12.58□□□□□ -0.4
NEDD1-201ENST00000266742 CEP162Q5TB80 1403 aa12.57□□□□□ -0.4
NEDD1-201ENST00000266742 SOGA1O94964 1423 aa12.56□□□□□ -0.4
NEDD1-201ENST00000266742 BICRAQ9NZM4 1560 aa12.56□□□□□ -0.4
NEDD1-201ENST00000266742 PEG3Q9GZU2 1588 aa12.56□□□□□ -0.4
NEDD1-201ENST00000266742 GOLGA3Q08378 1498 aa12.52□□□□□ -0.4
NEDD1-201ENST00000266742 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.5□□□□□ -0.41
NEDD1-201ENST00000266742 BAZ1BQ9UIG0 1483 aaKnown RBP12.49□□□□□ -0.41
NEDD1-201ENST00000266742 ATAD2BQ9ULI0 1458 aa12.49□□□□□ -0.41
NEDD1-201ENST00000266742 CEP164Q9UPV0 1460 aa12.46□□□□□ -0.42
NEDD1-201ENST00000266742 TTBK1Q5TCY1 1321 aaPredicted RBP12.45□□□□□ -0.42
NEDD1-201ENST00000266742 RUSC2Q8N2Y8 1516 aa12.44□□□□□ -0.42
NEDD1-201ENST00000266742 APLP2Q06481 763 aa12.43□□□□□ -0.42
NEDD1-201ENST00000266742 KIF21BO75037 1637 aa12.38□□□□□ -0.43
NEDD1-201ENST00000266742 SYNJ1O43426 1573 aa12.37□□□□□ -0.43
NEDD1-201ENST00000266742 CLIP1P30622 1438 aa12.37□□□□□ -0.43
NEDD1-201ENST00000266742 VPS8Q8N3P4 1428 aa12.31□□□□□ -0.44
NEDD1-201ENST00000266742 DIEXFQ68CQ4 756 aaKnown RBP12.3□□□□□ -0.44
NEDD1-201ENST00000266742 TOP2BQ02880 1626 aa12.28□□□□□ -0.44
NEDD1-201ENST00000266742 NCAPD3P42695 1498 aa12.28□□□□□ -0.44
NEDD1-201ENST00000266742 RAPGEF2Q9Y4G8 1499 aa12.26□□□□□ -0.45
NEDD1-201ENST00000266742 HMGXB3Q12766 1538 aa12.26□□□□□ -0.45
NEDD1-201ENST00000266742 CENPBP07199 599 aaPredicted RBP12.26□□□□□ -0.45
NEDD1-201ENST00000266742 HNRNPUL2Q1KMD3 747 aaKnown RBP12.26□□□□□ -0.45
NEDD1-201ENST00000266742 RANGAP1P46060 587 aaPredicted RBP12.25□□□□□ -0.45
NEDD1-201ENST00000266742 ZNF316A6NFI3 1004 aaPredicted RBP12.22□□□□□ -0.45
NEDD1-201ENST00000266742 ERICH3Q5RHP9 1530 aa12.21□□□□□ -0.45
NEDD1-201ENST00000266742 BIVM-ERCC5R4GMW8 1640 aa12.21□□□□□ -0.45
NEDD1-201ENST00000266742 KIF27Q86VH2 1401 aa12.21□□□□□ -0.45
NEDD1-201ENST00000266742 PELP1Q8IZL8 1130 aaKnown RBP12.2□□□□□ -0.46
NEDD1-201ENST00000266742 PRXQ9BXM0 1461 aa12.18□□□□□ -0.46
NEDD1-201ENST00000266742 SCAF1Q9H7N4 1312 aaKnown RBP12.18□□□□□ -0.46
NEDD1-201ENST00000266742 ACIN1Q9UKV3 1341 aaKnown RBP12.17□□□□□ -0.46
NEDD1-201ENST00000266742 CFTRP13569 1480 aa12.16□□□□□ -0.46
NEDD1-201ENST00000266742 CUX1P39880 1505 aa12.13□□□□□ -0.47
NEDD1-201ENST00000266742 CLSPNQ9HAW4 1339 aa12.12□□□□□ -0.47
NEDD1-201ENST00000266742 NEUROD1Q13562 356 aa12.08□□□□□ -0.48
NEDD1-201ENST00000266742 ARAP1Q96P48 1450 aa12.07□□□□□ -0.48
NEDD1-201ENST00000266742 CADPSQ9ULU8 1353 aa12.06□□□□□ -0.48
NEDD1-201ENST00000266742 CUX2O14529 1486 aa12.04□□□□□ -0.48
NEDD1-201ENST00000266742 KANK4Q5T7N3 995 aaPredicted RBP12.03□□□□□ -0.48
NEDD1-201ENST00000266742 GTF3C3Q9Y5Q9 886 aa12.01□□□□□ -0.49
NEDD1-201ENST00000266742 IGF1RP08069 1367 aa12□□□□□ -0.49
NEDD1-201ENST00000266742 RRBP1Q9P2E9 1410 aaKnown RBP12□□□□□ -0.49
NEDD1-201ENST00000266742 CARMIL1Q5VZK9 1371 aa12□□□□□ -0.49
NEDD1-201ENST00000266742 ARHGAP35Q9NRY4 1499 aa11.99□□□□□ -0.49
NEDD1-201ENST00000266742 CCNB3Q8WWL7 1395 aa11.99□□□□□ -0.49
NEDD1-201ENST00000266742 PRDM2Q13029 1718 aa11.98□□□□□ -0.49
NEDD1-201ENST00000266742 DHX57Q6P158 1386 aaKnown RBP11.98□□□□□ -0.49
NEDD1-201ENST00000266742 YTHDC1Q96MU7 727 aaKnown RBP11.96□□□□□ -0.49
NEDD1-201ENST00000266742 MIER1Q8N108 512 aa11.96□□□□□ -0.5
NEDD1-201ENST00000266742 FGD5Q6ZNL6 1462 aa11.95□□□□□ -0.5
NEDD1-201ENST00000266742 FHAD1B1AJZ9 1412 aa11.95□□□□□ -0.5
NEDD1-201ENST00000266742 MAP3K1Q13233 1512 aa11.94□□□□□ -0.5
NEDD1-201ENST00000266742 ITGAEP38570 1179 aa11.94□□□□□ -0.5
NEDD1-201ENST00000266742 FANCD2Q9BXW9 1451 aa11.91□□□□□ -0.5
NEDD1-201ENST00000266742 ATP1B4Q9UN42 357 aaPredicted RBP11.89□□□□□ -0.51
NEDD1-201ENST00000266742 CC2D2AQ9P2K1 1620 aa11.89□□□□□ -0.51
NEDD1-201ENST00000266742 TIAM1Q13009 1591 aa11.88□□□□□ -0.51
NEDD1-201ENST00000266742 FAM50AQ14320 339 aaKnown RBP11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms