RNA–Protein interactions for RNA: ENST00000568642.5

VPS35-209, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-209ENST00000568642 AEBP2Q6ZN18 517 aaPredicted RBP13.88□□□□□ -0.19
VPS35-209ENST00000568642 CHIC1Q5VXU3 224 aa12.84□□□□□ -0.35
VPS35-209ENST00000568642 SENP3Q9H4L4 574 aaPredicted RBP11.82□□□□□ -0.52
VPS35-209ENST00000568642 PHF23Q9BUL5 403 aaPredicted RBP11.63□□□□□ -0.55
VPS35-209ENST00000568642 POTEDQ86YR6 584 aa11.41□□□□□ -0.58
VPS35-209ENST00000568642 FOXD1Q16676 465 aa11.16□□□□□ -0.62
VPS35-209ENST00000568642 MSH5O43196 834 aa10.59□□□□□ -0.71
VPS35-209ENST00000568642 PIAS4Q8N2W9 510 aaPredicted RBP10.26□□□□□ -0.77
VPS35-209ENST00000568642 PPP6R1Q9UPN7 881 aa10.02□□□□□ -0.81
VPS35-209ENST00000568642 ADRA2BP18089 450 aa9.94□□□□□ -0.82
VPS35-209ENST00000568642 PLPPR3Q6T4P5 718 aa9.7□□□□□ -0.86
VPS35-209ENST00000568642 CACNB1Q02641 598 aaPredicted RBP9.47□□□□□ -0.89
VPS35-209ENST00000568642 MAPK8IP2Q13387 824 aaPredicted RBP9.32□□□□□ -0.92
VPS35-209ENST00000568642 DMRT2Q9Y5R5 561 aa9.3□□□□□ -0.92
VPS35-209ENST00000568642 RNF39Q9H2S5 420 aa9.03□□□□□ -0.96
VPS35-209ENST00000568642 DCAF8L1A6NGE4 600 aa8.96□□□□□ -0.98
VPS35-209ENST00000568642 SCAF1Q9H7N4 1312 aaKnown RBP8.95□□□□□ -0.98
VPS35-209ENST00000568642 C1QBPQ07021 282 aaKnown RBP8.81□□□□□ -1
VPS35-209ENST00000568642 POTEHQ6S545 545 aa8.8□□□□□ -1
VPS35-209ENST00000568642 HOXD11P31277 338 aaPredicted RBP8.73□□□□□ -1.01
VPS35-209ENST00000568642 RNF216Q9NWF9 866 aaPredicted RBP8.49□□□□□ -1.05
VPS35-209ENST00000568642 PPP4R3CPQ6ZMV5 832 aa8.47□□□□□ -1.05
VPS35-209ENST00000568642 DNAJC5BQ9UF47 199 aa8.47□□□□□ -1.05
VPS35-209ENST00000568642 CNKSR2Q8WXI2 1034 aa8.41□□□□□ -1.06
VPS35-209ENST00000568642 GRWD1Q9BQ67 446 aaKnown RBP eCLIP8.3□□□□□ -1.08
VPS35-209ENST00000568642 DSG3P32926 999 aa8.26□□□□□ -1.09
VPS35-209ENST00000568642 SPINK5Q9NQ38 1064 aaPredicted RBP8.2□□□□□ -1.1
VPS35-209ENST00000568642 CAPN15O75808 1086 aa8.16□□□□□ -1.1
VPS35-209ENST00000568642 U3KPZ7 1027 aaPredicted RBP8.11□□□□□ -1.11
VPS35-209ENST00000568642 ABCB7O75027 752 aa7.96□□□□□ -1.14
VPS35-209ENST00000568642 SP7Q8TDD2 431 aaPredicted RBP7.96□□□□□ -1.14
VPS35-209ENST00000568642 CHRDL2Q6WN34 429 aa7.95□□□□□ -1.14
VPS35-209ENST00000568642 TRHP20396 242 aaPredicted RBP7.89□□□□□ -1.15
VPS35-209ENST00000568642 NCBP3Q53F19 620 aaKnown RBP7.89□□□□□ -1.15
VPS35-209ENST00000568642 NPM3O75607 178 aaKnown RBP7.87□□□□□ -1.15
VPS35-209ENST00000568642 RBM42Q9BTD8 480 aaKnown RBP7.82□□□□□ -1.16
VPS35-209ENST00000568642 ZNF219Q9P2Y4 722 aaPredicted RBP7.8□□□□□ -1.16
VPS35-209ENST00000568642 SLC4A2P04920 1241 aa7.7□□□□□ -1.18
VPS35-209ENST00000568642 APLP2Q06481 763 aa7.67□□□□□ -1.18
VPS35-209ENST00000568642 PIP4P2Q8N4L2 257 aa7.65□□□□□ -1.18
VPS35-209ENST00000568642 HAX1O00165 279 aa7.64□□□□□ -1.19
VPS35-209ENST00000568642 EVX2Q03828 476 aa7.59□□□□□ -1.19
VPS35-209ENST00000568642 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP7.55□□□□□ -1.2
VPS35-209ENST00000568642 POLA2Q14181 598 aa7.55□□□□□ -1.2
VPS35-209ENST00000568642 HNRNPUL2Q1KMD3 747 aaKnown RBP7.55□□□□□ -1.2
VPS35-209ENST00000568642 AKT1S1Q96B36 256 aa7.54□□□□□ -1.2
VPS35-209ENST00000568642 SAMD1Q6SPF0 538 aaPredicted RBP7.51□□□□□ -1.21
VPS35-209ENST00000568642 REM2Q8IYK8 340 aaPredicted RBP7.51□□□□□ -1.21
VPS35-209ENST00000568642 PLSCR2Q9NRY7 297 aa7.5□□□□□ -1.21
VPS35-209ENST00000568642 FXR2P51116 673 aaKnown RBP eCLIP7.49□□□□□ -1.21
VPS35-209ENST00000568642 LHX8Q68G74 356 aa7.47□□□□□ -1.21
VPS35-209ENST00000568642 PITPNM1O00562 1244 aa7.46□□□□□ -1.22
VPS35-209ENST00000568642 OSCARQ8IYS5 282 aa7.35□□□□□ -1.23
VPS35-209ENST00000568642 GABBR2O75899 941 aa7.32□□□□□ -1.24
VPS35-209ENST00000568642 C19orf67A6NJJ6 358 aa7.27□□□□□ -1.25
VPS35-209ENST00000568642 MYCNP04198 464 aaPredicted RBP7.25□□□□□ -1.25
VPS35-209ENST00000568642 ZBTB12Q9Y330 459 aaPredicted RBP7.25□□□□□ -1.25
VPS35-209ENST00000568642 PRKAR2AP13861 404 aaKnown RBP7.24□□□□□ -1.25
VPS35-209ENST00000568642 KCNA4P22459 653 aa7.23□□□□□ -1.25
VPS35-209ENST00000568642 ATF5Q9Y2D1 282 aaPredicted RBP7.23□□□□□ -1.25
VPS35-209ENST00000568642 POTEIP0CG38 1075 aa7.21□□□□□ -1.26
VPS35-209ENST00000568642 CLEC11AQ9Y240 323 aa7.11□□□□□ -1.27
VPS35-209ENST00000568642 POTEMA6NI47 508 aa7.08□□□□□ -1.28
VPS35-209ENST00000568642 CHADLQ6NUI6 762 aa7.08□□□□□ -1.28
VPS35-209ENST00000568642 SPDYE1Q8NFV5 336 aaPredicted RBP7.04□□□□□ -1.28
VPS35-209ENST00000568642 SPDYE2BA6NHP3 402 aa7.03□□□□□ -1.28
VPS35-209ENST00000568642 SPDYE6P0CI01 402 aa7.03□□□□□ -1.28
VPS35-209ENST00000568642 SPDYE2Q495Y8 402 aa7.03□□□□□ -1.28
VPS35-209ENST00000568642 OTUD5Q96G74 571 aa7.03□□□□□ -1.28
VPS35-209ENST00000568642 POTEGQ6S5H5 508 aa7.02□□□□□ -1.29
VPS35-209ENST00000568642 SLC24A1O60721 1099 aa6.99□□□□□ -1.29
VPS35-209ENST00000568642 POTEB2H3BUK9 544 aa6.98□□□□□ -1.29
VPS35-209ENST00000568642 CD44P16070 742 aaKnown RBP6.97□□□□□ -1.29
VPS35-209ENST00000568642 DCBLD2Q96PD2 775 aa6.96□□□□□ -1.3
VPS35-209ENST00000568642 SSUH2Q9Y2M2 353 aa6.9□□□□□ -1.3
VPS35-209ENST00000568642 PCDH10Q9P2E7 1040 aa6.89□□□□□ -1.31
VPS35-209ENST00000568642 PRR29P0C7W0 189 aa6.88□□□□□ -1.31
VPS35-209ENST00000568642 CLCN6P51797 869 aa6.88□□□□□ -1.31
VPS35-209ENST00000568642 FBLN2P98095 1184 aa6.86□□□□□ -1.31
VPS35-209ENST00000568642 EHMT2Q96KQ7 1210 aa6.86□□□□□ -1.31
VPS35-209ENST00000568642 ZNF692Q9BU19 519 aaPredicted RBP6.86□□□□□ -1.31
VPS35-209ENST00000568642 FOXD4L1Q9NU39 408 aa6.86□□□□□ -1.31
VPS35-209ENST00000568642 FARP1Q9Y4F1 1045 aaPredicted RBP6.86□□□□□ -1.31
VPS35-209ENST00000568642 MKRN4PQ13434 485 aaPredicted RBP6.85□□□□□ -1.31
VPS35-209ENST00000568642 LCE2DQ5TA82 110 aaPredicted RBP6.85□□□□□ -1.31
VPS35-209ENST00000568642 GALR2O43603 387 aaPredicted RBP6.84□□□□□ -1.31
VPS35-209ENST00000568642 ZNF579Q8NAF0 562 aaKnown RBP6.83□□□□□ -1.32
VPS35-209ENST00000568642 DNAJC5Q9H3Z4 198 aa6.8□□□□□ -1.32
VPS35-209ENST00000568642 POTEJP0CG39 1038 aa6.78□□□□□ -1.32
VPS35-209ENST00000568642 PELP1Q8IZL8 1130 aaKnown RBP6.78□□□□□ -1.32
VPS35-209ENST00000568642 ZRANB1Q9UGI0 708 aa6.78□□□□□ -1.32
VPS35-209ENST00000568642 PABPN1Q86U42 306 aaKnown RBP eCLIP6.77□□□□□ -1.33
VPS35-209ENST00000568642 FAM163AQ96GL9 167 aaPredicted RBP6.74□□□□□ -1.33
VPS35-209ENST00000568642 ZBTB22O15209 634 aa6.72□□□□□ -1.33
VPS35-209ENST00000568642 PHF12Q96QT6 1004 aa6.68□□□□□ -1.34
VPS35-209ENST00000568642 METRNQ9UJH8 293 aa6.68□□□□□ -1.34
VPS35-209ENST00000568642 ATXN8OSP0DMR3 200 aa6.66□□□□□ -1.34
VPS35-209ENST00000568642 CSRNP3Q8WYN3 585 aa6.66□□□□□ -1.34
VPS35-209ENST00000568642 CDAN1Q8IWY9 1227 aa6.65□□□□□ -1.34
VPS35-209ENST00000568642 SLC4A1APQ9BWU0 796 aaKnown RBP6.65□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms