Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 LSM5-207ENST00000410044 687 ntTSL 3 BASIC18.92■□□□□ 0.62
COL4A1P02462 AC129492.3-201ENST00000498285 460 ntAPPRIS P1 TSL 4 BASIC18.92■□□□□ 0.62
COL4A1P02462 AC023310.1-201ENST00000554836 735 ntBASIC18.92■□□□□ 0.62
COL4A1P02462 NIP7-208ENST00000569637 1099 ntTSL 2 BASIC18.92■□□□□ 0.62
COL4A1P02462 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
COL4A1P02462 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
COL4A1P02462 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL4A1P02462 SLC9A7P1-202ENST00000556476 2239 ntBASIC18.92■□□□□ 0.62
COL4A1P02462 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL4A1P02462 CBX3-203ENST00000409747 1717 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
COL4A1P02462 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
COL4A1P02462 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC18.92■□□□□ 0.62
COL4A1P02462 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL4A1P02462 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL4A1P02462 LINC02273-201ENST00000499452 1592 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
COL4A1P02462 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
COL4A1P02462 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL4A1P02462 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC18.92■□□□□ 0.62
COL4A1P02462 TREM2-203ENST00000373122 1012 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL4A1P02462 BTBD6P1-201ENST00000412176 1267 ntBASIC18.92■□□□□ 0.62
COL4A1P02462 TSACC-208ENST00000481479 741 ntTSL 2 BASIC18.92■□□□□ 0.62
COL4A1P02462 YIF1A-210ENST00000496746 667 ntTSL 2 BASIC18.92■□□□□ 0.62
COL4A1P02462 AC104596.1-201ENST00000507826 579 ntTSL 4 BASIC18.92■□□□□ 0.62
COL4A1P02462 AC025810.1-201ENST00000569986 981 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
COL4A1P02462 AC110285.3-201ENST00000574472 665 ntTSL 3 BASIC18.92■□□□□ 0.62
COL4A1P02462 RN7SL48P-201ENST00000579283 293 ntBASIC18.92■□□□□ 0.62
COL4A1P02462 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL4A1P02462 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL4A1P02462 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
COL4A1P02462 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
COL4A1P02462 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL4A1P02462 HTR4-209ENST00000521530 1323 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
COL4A1P02462 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL4A1P02462 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL4A1P02462 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL4A1P02462 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC18.91■□□□□ 0.62
COL4A1P02462 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
COL4A1P02462 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
COL4A1P02462 CICP13-201ENST00000422015 2789 ntBASIC18.91■□□□□ 0.62
COL4A1P02462 TNRC18P3-201ENST00000441896 2691 ntBASIC18.91■□□□□ 0.62
COL4A1P02462 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL4A1P02462 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL4A1P02462 SNX21-203ENST00000372541 771 ntTSL 2 BASIC18.91■□□□□ 0.62
COL4A1P02462 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
COL4A1P02462 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
COL4A1P02462 CLIC1-206ENST00000375779 1127 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
COL4A1P02462 PSME1-202ENST00000382708 1136 ntTSL 2 BASIC18.91■□□□□ 0.62
COL4A1P02462 KNCN-202ENST00000396314 608 ntAPPRIS P3 TSL 4 BASIC18.91■□□□□ 0.62
COL4A1P02462 VAMP1-203ENST00000400911 1068 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
COL4A1P02462 AL157392.1-201ENST00000412388 373 ntTSL 2 BASIC18.91■□□□□ 0.62
COL4A1P02462 KRTAP10-13P-201ENST00000412914 571 ntBASIC18.91■□□□□ 0.62
COL4A1P02462 RGS5-214ENST00000429865 754 ntTSL 3 BASIC18.91■□□□□ 0.62
COL4A1P02462 AC244250.1-201ENST00000438185 451 ntTSL 2 BASIC18.91■□□□□ 0.62
COL4A1P02462 HIST2H2BB-201ENST00000449108 381 ntBASIC18.91■□□□□ 0.62
COL4A1P02462 AC092944.1-202ENST00000487238 483 ntTSL 4 BASIC18.91■□□□□ 0.62
COL4A1P02462 NEU3-202ENST00000526068 431 ntTSL 2 BASIC18.91■□□□□ 0.62
COL4A1P02462 AC007333.1-201ENST00000568286 630 ntTSL 3 BASIC18.91■□□□□ 0.62
COL4A1P02462 SAMD11P1-201ENST00000571429 661 ntBASIC18.91■□□□□ 0.62
COL4A1P02462 PPY2P-201ENST00000582808 702 ntBASIC18.91■□□□□ 0.62
COL4A1P02462 PPY2P-202ENST00000583761 657 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
COL4A1P02462 TUBB6-210ENST00000590967 430 ntTSL 3 BASIC18.91■□□□□ 0.62
COL4A1P02462 LINC01233-203ENST00000601708 494 ntTSL 3 BASIC18.91■□□□□ 0.62
COL4A1P02462 PPA1-206ENST00000625364 644 ntTSL 5 BASIC18.91■□□□□ 0.62
COL4A1P02462 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
COL4A1P02462 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
COL4A1P02462 AC099398.1-201ENST00000567919 2776 ntBASIC18.91■□□□□ 0.62
COL4A1P02462 GEMIN7-201ENST00000270257 1657 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL4A1P02462 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL4A1P02462 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
COL4A1P02462 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL4A1P02462 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
COL4A1P02462 AL157414.3-201ENST00000624276 1954 ntBASIC18.9■□□□□ 0.62
COL4A1P02462 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
COL4A1P02462 HCRTR1-202ENST00000373706 1642 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
COL4A1P02462 LTB4R2-202ENST00000528054 3092 ntBASIC18.9■□□□□ 0.62
COL4A1P02462 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC18.9■□□□□ 0.62
COL4A1P02462 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
COL4A1P02462 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC18.9■□□□□ 0.62
COL4A1P02462 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
COL4A1P02462 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
COL4A1P02462 CSH1-201ENST00000316193 900 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
COL4A1P02462 IGHV3-53-201ENST00000390627 571 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
COL4A1P02462 ZNF527-203ENST00000483919 1142 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
COL4A1P02462 LYRM9-204ENST00000503642 432 ntTSL 3 BASIC18.9■□□□□ 0.62
COL4A1P02462 SDHD-202ENST00000525291 790 ntTSL 3 BASIC18.9■□□□□ 0.62
COL4A1P02462 AC026495.1-203ENST00000557528 906 ntTSL 5 BASIC18.9■□□□□ 0.62
COL4A1P02462 AC044839.1-204ENST00000634777 1058 ntTSL 5 BASIC18.9■□□□□ 0.62
COL4A1P02462 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
COL4A1P02462 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
COL4A1P02462 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
COL4A1P02462 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
COL4A1P02462 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
COL4A1P02462 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
COL4A1P02462 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC18.9■□□□□ 0.62
COL4A1P02462 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC18.89■□□□□ 0.61
COL4A1P02462 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC18.89■□□□□ 0.61
COL4A1P02462 ITPA-201ENST00000380113 1185 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
COL4A1P02462 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
COL4A1P02462 ITPA-202ENST00000399838 897 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
COL4A1P02462 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC18.89■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 69 ms