Protein–RNA interactions for Protein: Q9Y2D8

SSX2IP, Afadin- and alpha-actinin-binding protein, humanhuman

Predictions only

Length 614 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX2IPQ9Y2D8 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
SSX2IPQ9Y2D8 AFF4-201ENST00000265343 9552 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SSX2IPQ9Y2D8 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SSX2IPQ9Y2D8 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
SSX2IPQ9Y2D8 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC17.05■□□□□ 0.32
SSX2IPQ9Y2D8 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
SSX2IPQ9Y2D8 AL691432.1-201ENST00000596308 1422 ntBASIC17.05■□□□□ 0.32
SSX2IPQ9Y2D8 INPP5B-202ENST00000373023 4694 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
SSX2IPQ9Y2D8 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
SSX2IPQ9Y2D8 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC17.05■□□□□ 0.32
SSX2IPQ9Y2D8 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC17.05■□□□□ 0.32
SSX2IPQ9Y2D8 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
SSX2IPQ9Y2D8 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
SSX2IPQ9Y2D8 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
SSX2IPQ9Y2D8 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SSX2IPQ9Y2D8 IL32-202ENST00000325568 1105 ntAPPRIS P4 TSL 1 (best) BASIC17.05■□□□□ 0.32
SSX2IPQ9Y2D8 IL32-203ENST00000382213 880 ntAPPRIS ALT2 TSL 3 BASIC17.05■□□□□ 0.32
SSX2IPQ9Y2D8 ELP6-209ENST00000446787 894 ntTSL 3 BASIC17.05■□□□□ 0.32
SSX2IPQ9Y2D8 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC17.05■□□□□ 0.32
SSX2IPQ9Y2D8 AC008969.1-205ENST00000553254 876 ntTSL 2 BASIC17.05■□□□□ 0.32
SSX2IPQ9Y2D8 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
SSX2IPQ9Y2D8 PIGL-212ENST00000581006 554 ntTSL 4 BASIC17.05■□□□□ 0.32
SSX2IPQ9Y2D8 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC17.05■□□□□ 0.32
SSX2IPQ9Y2D8 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
SSX2IPQ9Y2D8 AC015936.2-201ENST00000593177 259 ntBASIC17.05■□□□□ 0.32
SSX2IPQ9Y2D8 AL033527.5-201ENST00000641382 801 ntBASIC17.05■□□□□ 0.32
SSX2IPQ9Y2D8 SPTLC2-201ENST00000216484 8170 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SSX2IPQ9Y2D8 PCDHA1-201ENST00000378133 2726 ntBASIC17.05■□□□□ 0.32
SSX2IPQ9Y2D8 MICALL1-201ENST00000215957 4710 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SSX2IPQ9Y2D8 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC17.05■□□□□ 0.32
SSX2IPQ9Y2D8 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
SSX2IPQ9Y2D8 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC17.05■□□□□ 0.32
SSX2IPQ9Y2D8 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC17.05■□□□□ 0.32
SSX2IPQ9Y2D8 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC17.05■□□□□ 0.32
SSX2IPQ9Y2D8 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
SSX2IPQ9Y2D8 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC17.05■□□□□ 0.32
SSX2IPQ9Y2D8 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
SSX2IPQ9Y2D8 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SSX2IPQ9Y2D8 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
SSX2IPQ9Y2D8 SLC41A1-201ENST00000367137 4997 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SSX2IPQ9Y2D8 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
SSX2IPQ9Y2D8 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
SSX2IPQ9Y2D8 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SSX2IPQ9Y2D8 TRAPPC8-201ENST00000283351 6226 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SSX2IPQ9Y2D8 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
SSX2IPQ9Y2D8 SPAAR-202ENST00000443779 1612 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
SSX2IPQ9Y2D8 TBC1D16-209ENST00000576768 6342 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
SSX2IPQ9Y2D8 MAGI1-201ENST00000330909 7415 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
SSX2IPQ9Y2D8 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
SSX2IPQ9Y2D8 MYH6-201ENST00000356287 5871 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SSX2IPQ9Y2D8 ADAMTS13-201ENST00000355699 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
SSX2IPQ9Y2D8 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SSX2IPQ9Y2D8 AC079776.1-201ENST00000401540 1152 ntBASIC17.04■□□□□ 0.32
SSX2IPQ9Y2D8 AC112492.5-201ENST00000421897 457 ntBASIC17.04■□□□□ 0.32
SSX2IPQ9Y2D8 SFTPC-202ENST00000437090 773 ntTSL 3 BASIC17.04■□□□□ 0.32
SSX2IPQ9Y2D8 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
SSX2IPQ9Y2D8 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
SSX2IPQ9Y2D8 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC17.04■□□□□ 0.32
SSX2IPQ9Y2D8 MIR8072-201ENST00000614241 80 ntBASIC17.04■□□□□ 0.32
SSX2IPQ9Y2D8 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
SSX2IPQ9Y2D8 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SSX2IPQ9Y2D8 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SSX2IPQ9Y2D8 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
SSX2IPQ9Y2D8 RABEPK-206ENST00000628863 1537 ntTSL 5 BASIC17.04■□□□□ 0.32
SSX2IPQ9Y2D8 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
SSX2IPQ9Y2D8 SPRED1-201ENST00000299084 7780 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SSX2IPQ9Y2D8 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
SSX2IPQ9Y2D8 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
SSX2IPQ9Y2D8 CLK3P2-201ENST00000427566 1453 ntBASIC17.04■□□□□ 0.32
SSX2IPQ9Y2D8 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC17.04■□□□□ 0.32
SSX2IPQ9Y2D8 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC17.04■□□□□ 0.32
SSX2IPQ9Y2D8 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SSX2IPQ9Y2D8 EIF4G1-206ENST00000392537 5229 ntTSL 2 BASIC17.04■□□□□ 0.32
SSX2IPQ9Y2D8 PDPK1-202ENST00000342085 7241 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SSX2IPQ9Y2D8 TRAPPC11-202ENST00000357207 4435 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
SSX2IPQ9Y2D8 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC17.03■□□□□ 0.32
SSX2IPQ9Y2D8 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC17.03■□□□□ 0.32
SSX2IPQ9Y2D8 CARMIL3-201ENST00000342740 4597 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
SSX2IPQ9Y2D8 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC17.03■□□□□ 0.32
SSX2IPQ9Y2D8 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SSX2IPQ9Y2D8 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SSX2IPQ9Y2D8 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
SSX2IPQ9Y2D8 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
SSX2IPQ9Y2D8 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SSX2IPQ9Y2D8 NORAD-201ENST00000565493 5339 ntBASIC17.03■□□□□ 0.32
SSX2IPQ9Y2D8 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
SSX2IPQ9Y2D8 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
SSX2IPQ9Y2D8 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SSX2IPQ9Y2D8 ZCCHC18-203ENST00000537356 2907 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
SSX2IPQ9Y2D8 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC17.03■□□□□ 0.32
SSX2IPQ9Y2D8 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC17.03■□□□□ 0.32
SSX2IPQ9Y2D8 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
SSX2IPQ9Y2D8 ZNF707-203ENST00000442058 562 ntTSL 4 BASIC17.03■□□□□ 0.32
SSX2IPQ9Y2D8 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC17.03■□□□□ 0.32
SSX2IPQ9Y2D8 ELFN1-AS1-202ENST00000453348 637 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
SSX2IPQ9Y2D8 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC17.03■□□□□ 0.32
SSX2IPQ9Y2D8 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC17.03■□□□□ 0.32
SSX2IPQ9Y2D8 C17orf62-239ENST00000585080 741 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
SSX2IPQ9Y2D8 WFDC1-204ENST00000613603 549 ntBASIC17.03■□□□□ 0.32
SSX2IPQ9Y2D8 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms