Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 GPAA1P2-202ENST00000606848 1787 ntBASIC12.34□□□□□ -0.43
CXCL1P09341 CHMP7-202ENST00000397677 3403 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
CXCL1P09341 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC12.34□□□□□ -0.43
CXCL1P09341 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC12.34□□□□□ -0.43
CXCL1P09341 SIGLECL1-208ENST00000614422 1516 ntAPPRIS P3 TSL 1 (best) BASIC12.34□□□□□ -0.43
CXCL1P09341 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC12.34□□□□□ -0.43
CXCL1P09341 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
CXCL1P09341 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC12.34□□□□□ -0.43
CXCL1P09341 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC12.34□□□□□ -0.43
CXCL1P09341 AK4P3-201ENST00000418260 669 ntBASIC12.34□□□□□ -0.43
CXCL1P09341 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC12.34□□□□□ -0.43
CXCL1P09341 ABR-204ENST00000543210 1049 ntTSL 2 BASIC12.34□□□□□ -0.43
CXCL1P09341 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC12.34□□□□□ -0.43
CXCL1P09341 ABR-217ENST00000572441 563 ntTSL 4 BASIC12.34□□□□□ -0.43
CXCL1P09341 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC12.34□□□□□ -0.43
CXCL1P09341 USP35-204ENST00000530267 2419 ntTSL 2 BASIC12.34□□□□□ -0.43
CXCL1P09341 INTS4P1-201ENST00000438455 1935 ntBASIC12.34□□□□□ -0.43
CXCL1P09341 GDAP1L1-207ENST00000612599 2585 ntTSL 3 BASIC12.34□□□□□ -0.43
CXCL1P09341 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
CXCL1P09341 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
CXCL1P09341 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC12.34□□□□□ -0.43
CXCL1P09341 RPN2-202ENST00000373622 2348 ntTSL 2 BASIC12.34□□□□□ -0.43
CXCL1P09341 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
CXCL1P09341 CEP135-202ENST00000422247 2092 ntTSL 2 BASIC12.34□□□□□ -0.43
CXCL1P09341 MAGEA8-205ENST00000542674 2084 ntAPPRIS P1 TSL 3 BASIC12.34□□□□□ -0.43
CXCL1P09341 LINC01138-206ENST00000622328 2212 ntTSL 2 BASIC12.34□□□□□ -0.43
CXCL1P09341 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
CXCL1P09341 METTL13-202ENST00000362019 3022 ntTSL 2 BASIC12.34□□□□□ -0.43
CXCL1P09341 GRAMD4-202ENST00000406902 4484 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
CXCL1P09341 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
CXCL1P09341 MTF2-202ENST00000370303 1951 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
CXCL1P09341 LINC02346-201ENST00000383019 1967 ntTSL 2 BASIC12.34□□□□□ -0.43
CXCL1P09341 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
CXCL1P09341 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC12.34□□□□□ -0.43
CXCL1P09341 AP5Z1-201ENST00000348624 2901 ntAPPRIS P1 TSL 5 BASIC12.34□□□□□ -0.43
CXCL1P09341 BEND6-203ENST00000370748 3497 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
CXCL1P09341 PXDNL-201ENST00000356297 4805 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
CXCL1P09341 CDK11B-203ENST00000341832 2998 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.43
CXCL1P09341 PDE8A-203ENST00000394553 3912 ntAPPRIS P4 TSL 1 (best) BASIC12.33□□□□□ -0.43
CXCL1P09341 SLC29A1-201ENST00000371708 2159 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
CXCL1P09341 MSH5-201ENST00000375703 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.44
CXCL1P09341 ZNF133-203ENST00000377671 2701 ntAPPRIS P3 TSL 1 (best) BASIC12.33□□□□□ -0.44
CXCL1P09341 GID4-201ENST00000268719 4237 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
CXCL1P09341 LINC00863-201ENST00000439559 3287 ntTSL 5 BASIC12.33□□□□□ -0.44
CXCL1P09341 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.44
CXCL1P09341 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC12.33□□□□□ -0.44
CXCL1P09341 CUX1-214ENST00000550008 4350 ntAPPRIS ALT2 TSL 5 BASIC12.33□□□□□ -0.44
CXCL1P09341 TMEM132E-203ENST00000631683 4379 ntAPPRIS P2 TSL 5 BASIC12.33□□□□□ -0.44
CXCL1P09341 ATE1-203ENST00000369043 4900 ntAPPRIS ALT1 TSL 1 (best) BASIC12.33□□□□□ -0.44
CXCL1P09341 DLG4-203ENST00000399510 3975 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
CXCL1P09341 TOP3BP1-201ENST00000420768 1380 ntBASIC12.33□□□□□ -0.44
CXCL1P09341 FCHSD2-204ENST00000409418 3154 ntAPPRIS P1 TSL 2 BASIC12.33□□□□□ -0.44
CXCL1P09341 DNAJC27-201ENST00000264711 4992 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
CXCL1P09341 PARD3B-204ENST00000406610 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.44
CXCL1P09341 CALML3-201ENST00000315238 2763 ntAPPRIS P1 BASIC12.33□□□□□ -0.44
CXCL1P09341 DUSP18-204ENST00000403268 2920 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
CXCL1P09341 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
CXCL1P09341 ADI1-201ENST00000327435 2391 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
CXCL1P09341 CDC25B-205ENST00000439880 3096 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.44
CXCL1P09341 EFCAB2-202ENST00000366522 6167 ntTSL 2 BASIC12.33□□□□□ -0.44
CXCL1P09341 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
CXCL1P09341 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
CXCL1P09341 NEAT1-201ENST00000499732 1811 ntTSL 2 BASIC12.33□□□□□ -0.44
CXCL1P09341 SLC7A8-212ENST00000529705 1819 ntTSL 2 BASIC12.33□□□□□ -0.44
CXCL1P09341 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
CXCL1P09341 PKM-220ENST00000568459 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC12.33□□□□□ -0.44
CXCL1P09341 MBD1-224ENST00000591416 4905 ntAPPRIS P3 TSL 5 BASIC12.33□□□□□ -0.44
CXCL1P09341 UBE3A-207ENST00000614096 8741 ntAPPRIS ALT1 TSL 1 (best) BASIC12.33□□□□□ -0.44
CXCL1P09341 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC12.33□□□□□ -0.44
CXCL1P09341 SLC35E2B-203ENST00000611123 5948 ntAPPRIS P1 TSL 2 BASIC12.33□□□□□ -0.44
CXCL1P09341 TMCC2-201ENST00000329800 2818 ntTSL 2 BASIC12.33□□□□□ -0.44
CXCL1P09341 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
CXCL1P09341 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
CXCL1P09341 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
CXCL1P09341 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC12.33□□□□□ -0.44
CXCL1P09341 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC12.33□□□□□ -0.44
CXCL1P09341 LINC00982-205ENST00000420957 435 ntBASIC12.33□□□□□ -0.44
CXCL1P09341 DAP-202ENST00000432074 1048 ntTSL 2 BASIC12.33□□□□□ -0.44
CXCL1P09341 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC12.33□□□□□ -0.44
CXCL1P09341 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC12.33□□□□□ -0.44
CXCL1P09341 AC011498.5-201ENST00000592027 486 ntBASIC12.33□□□□□ -0.44
CXCL1P09341 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC12.33□□□□□ -0.44
CXCL1P09341 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC12.33□□□□□ -0.44
CXCL1P09341 AC012306.2-201ENST00000609350 630 ntBASIC12.33□□□□□ -0.44
CXCL1P09341 AC073592.4-201ENST00000623827 446 ntBASIC12.33□□□□□ -0.44
CXCL1P09341 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC12.33□□□□□ -0.44
CXCL1P09341 AC097493.4-201ENST00000641197 219 ntBASIC12.33□□□□□ -0.44
CXCL1P09341 AP000867.4-201ENST00000641616 219 ntBASIC12.33□□□□□ -0.44
CXCL1P09341 LRRC8D-201ENST00000337338 3950 ntAPPRIS P1 TSL 2 BASIC12.33□□□□□ -0.44
CXCL1P09341 DYRK1B-202ENST00000348817 2448 ntTSL 5 BASIC12.33□□□□□ -0.44
CXCL1P09341 PDE4A-209ENST00000592685 2707 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.44
CXCL1P09341 ATG3-202ENST00000402314 3010 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
CXCL1P09341 TRMT1-201ENST00000221504 2179 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.44
CXCL1P09341 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
CXCL1P09341 LRRC41-208ENST00000617760 2158 ntTSL 5 BASIC12.33□□□□□ -0.44
CXCL1P09341 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
CXCL1P09341 NACC2-201ENST00000277554 6899 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
CXCL1P09341 KCTD10-208ENST00000540089 3096 ntTSL 2 BASIC12.33□□□□□ -0.44
CXCL1P09341 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC12.33□□□□□ -0.44
CXCL1P09341 ANKMY1-206ENST00000401804 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.44
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms