RNA–Protein interactions for RNA: ENST00000402314.6

ATG3-202, Transcript of autophagy related 3, humanhuman

TSL 1 (best) BASIC

Gene ATG3, Length 3,010 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG3-202ENST00000402314 NISCHQ9Y2I1 1504 aa29.02■■■□□ 2.24
ATG3-202ENST00000402314 SHROOM4Q9ULL8 1493 aa25.1■■□□□ 1.61
ATG3-202ENST00000402314 DCAF8L2P0C7V8 631 aa24.57■■□□□ 1.52
ATG3-202ENST00000402314 SUPT5HO00267 1087 aaKnown RBP24.56■■□□□ 1.52
ATG3-202ENST00000402314 ZCCHC6Q5VYS8 1495 aaKnown RBP24.49■■□□□ 1.51
ATG3-202ENST00000402314 CCDC180Q9P1Z9 1646 aa24.48■■□□□ 1.51
ATG3-202ENST00000402314 CHIC1Q5VXU3 224 aa23.68■■□□□ 1.38
ATG3-202ENST00000402314 DCAF1Q9Y4B6 1507 aa23.6■■□□□ 1.37
ATG3-202ENST00000402314 MYO15BQ96JP2 1530 aa23.58■■□□□ 1.37
ATG3-202ENST00000402314 HRCP23327 699 aa23.49■■□□□ 1.35
ATG3-202ENST00000402314 PPARGC1BQ86YN6 1023 aaKnown RBP23.45■■□□□ 1.34
ATG3-202ENST00000402314 PCGF6Q9BYE7 350 aa23.41■■□□□ 1.34
ATG3-202ENST00000402314 SCRIBQ14160 1630 aa23.27■■□□□ 1.32
ATG3-202ENST00000402314 ABCC9O60706 1549 aa23.2■■□□□ 1.3
ATG3-202ENST00000402314 LOC105371045A0A1W2PR82 267 aa23.15■■□□□ 1.3
ATG3-202ENST00000402314 RSF1Q96T23 1441 aaPredicted RBP23.03■■□□□ 1.28
ATG3-202ENST00000402314 CECR2Q9BXF3 1484 aa22.83■■□□□ 1.25
ATG3-202ENST00000402314 FAM9AQ8IZU1 332 aaPredicted RBP22.78■■□□□ 1.24
ATG3-202ENST00000402314 RB1CC1Q8TDY2 1594 aa22.78■■□□□ 1.24
ATG3-202ENST00000402314 EHMT2Q96KQ7 1210 aa22.75■■□□□ 1.23
ATG3-202ENST00000402314 NACADO15069 1562 aa22.75■■□□□ 1.23
ATG3-202ENST00000402314 TRIM41Q8WV44 630 aa22.75■■□□□ 1.23
ATG3-202ENST00000402314 MROH2BQ7Z745 1585 aa22.66■■□□□ 1.22
ATG3-202ENST00000402314 WIZO95785 1651 aa22.52■■□□□ 1.2
ATG3-202ENST00000402314 TRIM26Q12899 539 aaPredicted RBP22.36■■□□□ 1.17
ATG3-202ENST00000402314 SCAF1Q9H7N4 1312 aaKnown RBP22.33■■□□□ 1.16
ATG3-202ENST00000402314 PABPN1Q86U42 306 aaKnown RBP eCLIP22.33■■□□□ 1.16
ATG3-202ENST00000402314 BAZ1AQ9NRL2 1556 aaPredicted RBP22.24■■□□□ 1.15
ATG3-202ENST00000402314 PELP1Q8IZL8 1130 aaKnown RBP22.18■■□□□ 1.14
ATG3-202ENST00000402314 UNC13AQ9UPW8 1703 aa22.12■■□□□ 1.13
ATG3-202ENST00000402314 SMARCA4P51532 1647 aa22.09■■□□□ 1.13
ATG3-202ENST00000402314 CCDC88BA6NC98 1476 aa22.08■■□□□ 1.13
ATG3-202ENST00000402314 ABCC8Q09428 1581 aa22.08■■□□□ 1.12
ATG3-202ENST00000402314 TOP2AP11388 1531 aaKnown RBP22.03■■□□□ 1.12
ATG3-202ENST00000402314 EIF4G1Q04637 1599 aaKnown RBP22.02■■□□□ 1.12
ATG3-202ENST00000402314 SMARCA2P51531 1590 aa21.97■■□□□ 1.11
ATG3-202ENST00000402314 TTBK1Q5TCY1 1321 aaPredicted RBP21.95■■□□□ 1.1
ATG3-202ENST00000402314 BICRAQ9NZM4 1560 aa21.92■■□□□ 1.1
ATG3-202ENST00000402314 ZEB1P37275 1124 aaPredicted RBP21.92■■□□□ 1.1
ATG3-202ENST00000402314 SOGA1O94964 1423 aa21.88■■□□□ 1.09
ATG3-202ENST00000402314 RUSC2Q8N2Y8 1516 aa21.81■■□□□ 1.08
ATG3-202ENST00000402314 NEUROD1Q13562 356 aa21.8■■□□□ 1.08
ATG3-202ENST00000402314 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.76■■□□□ 1.07
ATG3-202ENST00000402314 UBTFP17480 764 aaKnown RBP21.74■■□□□ 1.07
ATG3-202ENST00000402314 CSRNP3Q8WYN3 585 aa21.71■■□□□ 1.07
ATG3-202ENST00000402314 GTF3C3Q9Y5Q9 886 aa21.7■■□□□ 1.06
ATG3-202ENST00000402314 ACIN1Q9UKV3 1341 aaKnown RBP21.69■■□□□ 1.06
ATG3-202ENST00000402314 CEP162Q5TB80 1403 aa21.65■■□□□ 1.06
ATG3-202ENST00000402314 WRNQ14191 1432 aaPredicted RBP eCLIP21.63■■□□□ 1.05
ATG3-202ENST00000402314 ATAD2BQ9ULI0 1458 aa21.62■■□□□ 1.05
ATG3-202ENST00000402314 CCER1Q8TC90 406 aaPredicted RBP21.61■■□□□ 1.05
ATG3-202ENST00000402314 BAZ1BQ9UIG0 1483 aaKnown RBP21.57■■□□□ 1.04
ATG3-202ENST00000402314 RANGAP1P46060 587 aaPredicted RBP21.56■■□□□ 1.04
ATG3-202ENST00000402314 TNIKQ9UKE5 1360 aa21.55■■□□□ 1.04
ATG3-202ENST00000402314 PEG3Q9GZU2 1588 aa21.54■■□□□ 1.04
ATG3-202ENST00000402314 SYNJ1O43426 1573 aa21.51■■□□□ 1.03
ATG3-202ENST00000402314 YTHDC1Q96MU7 727 aaKnown RBP21.49■■□□□ 1.03
ATG3-202ENST00000402314 DIEXFQ68CQ4 756 aaKnown RBP21.48■■□□□ 1.03
ATG3-202ENST00000402314 EEA1Q15075 1411 aa21.45■■□□□ 1.03
ATG3-202ENST00000402314 GOLGA3Q08378 1498 aa21.43■■□□□ 1.02
ATG3-202ENST00000402314 CENPBP07199 599 aaPredicted RBP21.4■■□□□ 1.02
ATG3-202ENST00000402314 CEP164Q9UPV0 1460 aa21.3■■□□□ 1
ATG3-202ENST00000402314 RAPGEF2Q9Y4G8 1499 aa21.3■■□□□ 1
ATG3-202ENST00000402314 CLIP1P30622 1438 aa21.28■■□□□ 1
ATG3-202ENST00000402314 HNRNPUL2Q1KMD3 747 aaKnown RBP21.27■■□□□ 1
ATG3-202ENST00000402314 KIF21BO75037 1637 aa21.18■□□□□ 0.98
ATG3-202ENST00000402314 NCAPD3P42695 1498 aa21.15■□□□□ 0.98
ATG3-202ENST00000402314 TOP2BQ02880 1626 aa21.14■□□□□ 0.97
ATG3-202ENST00000402314 APLP2Q06481 763 aa21.13■□□□□ 0.97
ATG3-202ENST00000402314 MYT1Q01538 1121 aa21.13■□□□□ 0.97
ATG3-202ENST00000402314 VPS8Q8N3P4 1428 aa21.1■□□□□ 0.97
ATG3-202ENST00000402314 CUX1P39880 1505 aa21.07■□□□□ 0.96
ATG3-202ENST00000402314 HMGXB3Q12766 1538 aa21.04■□□□□ 0.96
ATG3-202ENST00000402314 MIER1Q8N108 512 aa21.02■□□□□ 0.95
ATG3-202ENST00000402314 BIVM-ERCC5R4GMW8 1640 aa21■□□□□ 0.95
ATG3-202ENST00000402314 ZNF316A6NFI3 1004 aaPredicted RBP20.98■□□□□ 0.95
ATG3-202ENST00000402314 CFTRP13569 1480 aa20.98■□□□□ 0.95
ATG3-202ENST00000402314 PRXQ9BXM0 1461 aa20.98■□□□□ 0.95
ATG3-202ENST00000402314 KANK4Q5T7N3 995 aaPredicted RBP20.98■□□□□ 0.95
ATG3-202ENST00000402314 KIF27Q86VH2 1401 aa20.93■□□□□ 0.94
ATG3-202ENST00000402314 ARAP1Q96P48 1450 aa20.91■□□□□ 0.94
ATG3-202ENST00000402314 ERICH3Q5RHP9 1530 aa20.84■□□□□ 0.93
ATG3-202ENST00000402314 CUX2O14529 1486 aa20.84■□□□□ 0.93
ATG3-202ENST00000402314 CADPSQ9ULU8 1353 aa20.82■□□□□ 0.92
ATG3-202ENST00000402314 ITGAEP38570 1179 aa20.81■□□□□ 0.92
ATG3-202ENST00000402314 IGF1RP08069 1367 aa20.79■□□□□ 0.92
ATG3-202ENST00000402314 P3H3Q8IVL6 736 aa20.76■□□□□ 0.91
ATG3-202ENST00000402314 ARHGAP35Q9NRY4 1499 aa20.76■□□□□ 0.91
ATG3-202ENST00000402314 FGD5Q6ZNL6 1462 aa20.73■□□□□ 0.91
ATG3-202ENST00000402314 CC2D2AQ9P2K1 1620 aa20.73■□□□□ 0.91
ATG3-202ENST00000402314 CARMIL1Q5VZK9 1371 aa20.7■□□□□ 0.9
ATG3-202ENST00000402314 ATP1B4Q9UN42 357 aaPredicted RBP20.69■□□□□ 0.9
ATG3-202ENST00000402314 NESP48681 1621 aa20.66■□□□□ 0.9
ATG3-202ENST00000402314 RAD54L2Q9Y4B4 1467 aa20.64■□□□□ 0.89
ATG3-202ENST00000402314 DNAJC5BQ9UF47 199 aa20.64■□□□□ 0.89
ATG3-202ENST00000402314 FANCD2Q9BXW9 1451 aa20.63■□□□□ 0.89
ATG3-202ENST00000402314 DHX57Q6P158 1386 aaKnown RBP20.63■□□□□ 0.89
ATG3-202ENST00000402314 CCNB3Q8WWL7 1395 aa20.58■□□□□ 0.88
ATG3-202ENST00000402314 PRDM2Q13029 1718 aa20.56■□□□□ 0.88
ATG3-202ENST00000402314 RRBP1Q9P2E9 1410 aaKnown RBP20.55■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 151.5 ms